Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0007791

Physical Location & Seq

Genomic Coordinates Reverse (-)

8654004 .. 8656389

Gene Structure 2386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1063700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCACAAGCTATGGATGTTGGAGATGAAGTGAGGGAAGGCACTATTCAGTCTCTTATCATGGATTCCCTAGAGTCTATTAAGAAAGGCGAGGTACTTTCTCCAGAAGACAATGCTTGGGTTGATTCGTGCCTGATTAATGAATTTGACGTTTTCGATGACAACTGGGATTCTCTGAAAGGTGCCTTAAAAGAAATCCTTAATTCCCAGCCACCCGAATCACTCAGCTCTTCCGCACTTGTAACTGATGGTTTACCCGGGGGAACCGACATTGAGGTACTTCCTTCTCGTGAGAGGGCAGAAACAGAACAACTCCGAAGAAGAATCCGAAATGCTGTTCTTGGTATTGGTGAAGAAGCAGAAAGAAGTGATGAAGATGATGATGGTGACATGCCAACCGATGAGGATACGAATAATTTGCAGTCATCAACTTTTACGGGAAATCCATTTTTGCCAGGTTACAAAGATGACCCGAGAATGACCGAAAACCCTGAGTTAGGAGCCGATATCAGCTCTTCGTTATCTGAGATGGAGCCGTCAACAAAGGATATTTTCAGGGTTTGGGATTTGGATGTTCCTGCGGAGGAAGACGACCTGGTAAAGCAGTTGACCAAGGCCCTCGAAGAAAGTTTGCCTCAACCGGTCGCATCAACTTTTGATGATTCTGATGTATGGAAAAGTATGAAAGTAGATTCGGTCGATGATCTGGTTTCTGGGATTGCAGATCTATCTTTGGATCTAAACTCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

251

Amino Acids

27.46

Weight (kDa)

4.05

Isoelectric Point (pI)

60.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38980
fragaria_vesca	FvH4_2g10380
malus_domestica	MD00G1040100.v1.1 MD10G1063700.v1.1
prunus_persica	Prupe.8G085200_v2.0.a1 Prupe.8G085200_v2.0.a1 Prupe.8G085200_v2.0.a1 Prupe.8G085200_v2.0.a1
pyrus_communis	pycom05g04670
rosa_chinensis	RchiOBHm_Chr6g0267851
rosa_laevigata	RLG00000013977
rosa_multiflora	Rmu_sc0005400.1_g000020
rosa_roxburghii	Rroxscaffold_7G00200440 Rroxscaffold_7G00200450
rosa_rugosa	Rorug06G0034400 Rorug06G0034500
rosa_samantha	Rh6AG156300 Rh6AG156400 Rh6BG157400 Rh6CG158600 Rh6DG142500 Rh6DG142600
rosa_wichuraiana	Rw6G013430 Rw6G013570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	182
AciI	CCGC	2 cut(s)	234, 581
AclWI	GGATC	1 cut(s)	744
AcsI	RAATTY	1 cut(s)	143
AfaI	GTAC	2 cut(s)	96, 279
AfiI	CCNNNNNNNGG	1 cut(s)	497
AgeI	ACCGGT	1 cut(s)	640
AjnI	CCWGG	2 cut(s)	454, 594
AluBI	AGCT	3 cut(s)	11, 228, 513
AluI	AGCT	3 cut(s)	11, 228, 513
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	1 cut(s)	744
Ama87I	CYCGRG	2 cut(s)	257, 472
AoxI	GGCC	1 cut(s)	615
ApoI	RAATTY	1 cut(s)	143
AseI	ATTAAT	1 cut(s)	138
AsiGI	ACCGGT	1 cut(s)	640
AspS9I	GGNCC	1 cut(s)	616
AsuC2I	CCSGG	2 cut(s)	258, 259
AsuHPI	GGTGA	2 cut(s)	362, 398
AvaI	CYCGRG	2 cut(s)	257, 472
BanI	GGYRCC	1 cut(s)	182
BauI	CACGAG	1 cut(s)	288
BbsI	GAAGAC	2 cut(s)	114, 594
BccI	CCATC	3 cut(s)	242, 377, 523
BceAI	ACGGC	1 cut(s)	520
BcgI	CGANNNNNNTGC	2 cut(s)	400, 434
BciT130I	CCWGG	2 cut(s)	456, 596
BciVI	GTATCC	1 cut(s)	400
BcnI	CCSGG	2 cut(s)	258, 259
BcoDI	GTCTC	1 cut(s)	57
BfaI	CTAG	1 cut(s)	71
BfuI	GTATCC	1 cut(s)	400
BglII	AGATCT	1 cut(s)	724
Bme1390I	CCNGG	4 cut(s)	258, 259, 456, 596
BmeT110I	CYCGRG	2 cut(s)	257, 472
BmgT120I	GGNCC	1 cut(s)	616
BmiI	GGNNCC	4 cut(s)	184, 265, 502, 534
BmrFI	CCNGG	4 cut(s)	258, 259, 456, 596
BmrI	ACTGGG	1 cut(s)	175
BmsI	GCATC	1 cut(s)	656
BmuI	ACTGGG	1 cut(s)	175
BpiI	GAAGAC	2 cut(s)	114, 594
BpmI	CTGGAG	1 cut(s)	87
BpuMI	CCSGG	2 cut(s)	258, 259
BsaJI	CCNNGG	3 cut(s)	257, 258, 612
BsaWI	WCCGGW	1 cut(s)	640
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse118I	RCCGGY	1 cut(s)	640
Bse1I	ACTGG	1 cut(s)	170
BseBI	CCWGG	2 cut(s)	456, 596
BseDI	CCNNGG	3 cut(s)	257, 258, 612
BseGI	GGATG	2 cut(s)	22, 577
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMII	CTCAG	3 cut(s)	238, 483, 516
BseNI	ACTGG	1 cut(s)	170
BseYI	CCCAGC	1 cut(s)	207
Bsh1285I	CGRYCG	2 cut(s)	645, 699
BshFI	GGCC	1 cut(s)	617
BshNI	GGYRCC	1 cut(s)	182
BshTI	ACCGGT	1 cut(s)	640
BsiEI	CGRYCG	2 cut(s)	645, 699
BsiHKCI	CYCGRG	2 cut(s)	257, 472
BsiSI	CCGG	2 cut(s)	258, 641
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmAI	GTCTC	1 cut(s)	57
BsnI	GGCC	1 cut(s)	617
BsoBI	CYCGRG	2 cut(s)	257, 472
Bsp143I	GATC	3 cut(s)	703, 724, 736
BspACI	CCGC	2 cut(s)	234, 581
BspANI	GGCC	1 cut(s)	617
BspCNI	CTCAG	3 cut(s)	237, 484, 517
BspLI	GGNNCC	4 cut(s)	184, 265, 502, 534
BspPI	GGATC	1 cut(s)	744
BspQI	GCTCTTC	2 cut(s)	235, 520
BspT107I	GGYRCC	1 cut(s)	182
BsrFI	RCCGGY	1 cut(s)	640
BsrI	ACTGG	1 cut(s)	170
BssAI	RCCGGY	1 cut(s)	640
BssECI	CCNNGG	3 cut(s)	257, 258, 612
BssMI	GATC	3 cut(s)	703, 724, 736
BssSI	CACGAG	1 cut(s)	288
BssT1I	CCWWGG	1 cut(s)	612
Bst2BI	CACGAG	1 cut(s)	288
Bst2UI	CCWGG	2 cut(s)	456, 596
Bst6I	CTCTTC	2 cut(s)	235, 520
BstDEI	CTNAG	3 cut(s)	224, 492, 525
BstENI	CCTNNNNNAGG	1 cut(s)	495
BstF5I	GGATG	2 cut(s)	22, 577
BstKTI	GATC	3 cut(s)	706, 727, 739
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	3 cut(s)	703, 724, 736
BstMCI	CGRYCG	2 cut(s)	645, 699
BstNI	CCWGG	2 cut(s)	456, 596
BstNSI	RCATGY	1 cut(s)	394
BstSCI	CCNGG	4 cut(s)	256, 257, 454, 594
BstV2I	GAAGAC	2 cut(s)	114, 594
BstX2I	RGATCY	2 cut(s)	724, 736
BstYI	RGATCY	2 cut(s)	724, 736
BsuI	GTATCC	1 cut(s)	400
BsuRI	GGCC	1 cut(s)	617
BtsCI	GGATG	2 cut(s)	22, 577
Cfr10I	RCCGGY	1 cut(s)	640
Cfr13I	GGNCC	1 cut(s)	616
Cfr9I	CCCGGG	1 cut(s)	257
CsiI	ACCWGGT	1 cut(s)	594
Csp6I	GTAC	2 cut(s)	95, 278
CspAI	ACCGGT	1 cut(s)	640
CviAII	CATG	2 cut(s)	61, 391
CviJI	RGCY	7 cut(s)	11, 211, 228, 503, 513, 535, 617
CviKI_1	RGCY	7 cut(s)	11, 211, 228, 503, 513, 535, 617
CviQI	GTAC	2 cut(s)	95, 278
DdeI	CTNAG	3 cut(s)	224, 492, 525
DpnI	GATC	3 cut(s)	705, 726, 738
DpnII	GATC	3 cut(s)	703, 724, 736
Eam1104I	CTCTTC	2 cut(s)	235, 520
EarI	CTCTTC	2 cut(s)	235, 520
Eco130I	CCWWGG	1 cut(s)	612
Eco32I	GATATC	1 cut(s)	508
Eco88I	CYCGRG	2 cut(s)	257, 472
EcoNI	CCTNNNNNAGG	1 cut(s)	495
EcoO109I	RGGNCCY	1 cut(s)	616
EcoRII	CCWGG	2 cut(s)	454, 594
EcoRV	GATATC	1 cut(s)	508
EcoT14I	CCWWGG	1 cut(s)	612
ErhI	CCWWGG	1 cut(s)	612
FaeI	CATG	2 cut(s)	64, 394
FaiI	YATR	5 cut(s)	14, 62, 392, 673, 683
FalI	AAGNNNNNCTT	2 cut(s)	183, 215
FatI	CATG	2 cut(s)	60, 390
FokI	GGATG	2 cut(s)	29, 584
FspBI	CTAG	1 cut(s)	71
GsaI	CCCAGC	1 cut(s)	211
GsuI	CTGGAG	1 cut(s)	87
HaeIII	GGCC	1 cut(s)	617
HapII	CCGG	2 cut(s)	258, 641
Hin1II	CATG	2 cut(s)	64, 394
HincII	GTYRAC	2 cut(s)	540, 609
HindII	GTYRAC	2 cut(s)	540, 609
HinfI	GANTC	8 cut(s)	65, 74, 125, 170, 218, 324, 662, 692
HpaII	CCGG	2 cut(s)	258, 641
HphI	GGTGA	2 cut(s)	362, 398
Hpy166II	GTNNAC	3 cut(s)	254, 540, 609
Hpy188I	TCNGA	5 cut(s)	177, 317, 329, 526, 667
Hpy188III	TCNNGA	2 cut(s)	104, 290
Hpy8I	GTNNAC	3 cut(s)	254, 540, 609
HpyAV	CCTTC	2 cut(s)	32, 294
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	2 cut(s)	421, 722
HpyF3I	CTNAG	3 cut(s)	224, 492, 525
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	2 cut(s)	64, 394
Kzo9I	GATC	3 cut(s)	703, 724, 736
LguI	GCTCTTC	2 cut(s)	235, 520
LmnI	GCTCC	2 cut(s)	500, 532
LweI	GCATC	1 cut(s)	656
MabI	ACCWGGT	1 cut(s)	594
MaeI	CTAG	1 cut(s)	71
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	3 cut(s)	241, 386, 458
MalI	GATC	3 cut(s)	705, 726, 738
MboI	GATC	3 cut(s)	703, 724, 736
MboII	GAAGA	9 cut(s)	119, 222, 330, 333, 365, 386, 507, 599, 635
MflI	RGATCY	2 cut(s)	724, 736
MluCI	AATT	3 cut(s)	143, 202, 415
MlyI	GAGTC	1 cut(s)	83
MnlI	CCTC	8 cut(s)	27, 85, 268, 288, 397, 577, 629, 645
MseI	TTAA	5 cut(s)	81, 138, 188, 201, 751
MspI	CCGG	2 cut(s)	258, 641
MspR9I	CCNGG	4 cut(s)	258, 259, 456, 596
MvaI	CCWGG	2 cut(s)	456, 596
NciI	CCSGG	2 cut(s)	258, 259
NdeII	GATC	3 cut(s)	703, 724, 736
NlaIII	CATG	2 cut(s)	64, 394
NlaIV	GGNNCC	4 cut(s)	184, 265, 502, 534
NmuCI	GTSAC	1 cut(s)	386
NspI	RCATGY	1 cut(s)	394
PciSI	GCTCTTC	2 cut(s)	235, 520
PfeI	GAWTC	7 cut(s)	65, 125, 170, 218, 324, 662, 692
PinAI	ACCGGT	1 cut(s)	640
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
PshBI	ATTAAT	1 cut(s)	138
Psp6I	CCWGG	2 cut(s)	454, 594
PspFI	CCCAGC	1 cut(s)	207
PspGI	CCWGG	2 cut(s)	454, 594
PspN4I	GGNNCC	4 cut(s)	184, 265, 502, 534
PspPI	GGNCC	1 cut(s)	616
PsuI	RGATCY	2 cut(s)	724, 736
RsaI	GTAC	2 cut(s)	96, 279
RsaNI	GTAC	2 cut(s)	95, 278
SapI	GCTCTTC	2 cut(s)	235, 520
SaqAI	TTAA	5 cut(s)	81, 138, 188, 201, 751
Sau3AI	GATC	3 cut(s)	703, 724, 736
Sau96I	GGNCC	1 cut(s)	616
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	4 cut(s)	258, 259, 456, 596
SetI	ASST	9 cut(s)	13, 96, 153, 184, 230, 279, 460, 515, 597
SexAI	ACCWGGT	1 cut(s)	594
SfaNI	GCATC	1 cut(s)	656
SmaI	CCCGGG	1 cut(s)	259
Sse9I	AATT	3 cut(s)	143, 202, 415
SsiI	CCGC	2 cut(s)	234, 581
SspMI	CTAG	1 cut(s)	71
StyD4I	CCNGG	4 cut(s)	256, 257, 454, 594
StyI	CCWWGG	1 cut(s)	612
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	3 cut(s)	156, 621, 699
TaqII	GACCGA	2 cut(s)	497, 685
TasI	AATT	3 cut(s)	143, 202, 415
TfiI	GAWTC	7 cut(s)	65, 125, 170, 218, 324, 662, 692
Tru1I	TTAA	5 cut(s)	81, 138, 188, 201, 751
Tru9I	TTAA	5 cut(s)	81, 138, 188, 201, 751
TseFI	GTSAC	1 cut(s)	386
Tsp45I	GTSAC	1 cut(s)	386
TspDTI	ATGAA	4 cut(s)	42, 156, 387, 698
TspMI	CCCGGG	1 cut(s)	257
VspI	ATTAAT	1 cut(s)	138
XagI	CCTNNNNNAGG	1 cut(s)	495
XapI	RAATTY	1 cut(s)	143
XceI	RCATGY	1 cut(s)	394
XmaI	CCCGGG	1 cut(s)	257
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.