Rroxscaffold_7G00200450

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
47861179 .. 47862997
1819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00200450.1

Sequence Viewer

Length: 300 bp
ATGAAGAAGAAAACACAGTTTGTGAAGAACAAAGAAAGGGGCTGTGAATATGAGGAGAGTAACACTGCTTTTCCTCAAGCTTATTATGCCCAAAAATGGCTAATCTTTCCTCGGCGACCTCAACCTGCGAGACCCTCTTTGCTACATCTCGGATTCTCGAGCACCTCCTCAATGGCTATGGACACCGGAGATGAAGTTATGGAAAACACTATTCCTTCTCTCATTAAAGATTCCCTCGAGTCTACTCGGAAAGGCAAGGTAGGTTCTCCGAAGACATTGCTTGGGTTGATTCCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.11

Weight (kDa)

9.52

Isoelectric Point (pI)

49.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 133
AccI GTMKAC 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 96
AluBI AGCT 1 cut(s) 80
AluI AGCT 1 cut(s) 80
Alw21I GWGCWC 1 cut(s) 164
Alw26I GTCTC 1 cut(s) 124
Ama87I CYCGRG 2 cut(s) 157, 236
AvaI CYCGRG 2 cut(s) 157, 236
BbsI GAAGAC 1 cut(s) 278
Bbv12I GWGCWC 1 cut(s) 164
BcgI CGANNNNNNTGC 2 cut(s) 259, 293
BcoDI GTCTC 1 cut(s) 124
BfuAI ACCTGC 1 cut(s) 133
BmeT110I CYCGRG 2 cut(s) 157, 236
BpiI GAAGAC 1 cut(s) 278
BpuEI CTTGAG 1 cut(s) 60
BsaI GGTCTC 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 110
BsaWI WCCGGW 1 cut(s) 185
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bsc4I CCNNNNNNNGG 1 cut(s) 96
Bse3DI GCAATG 1 cut(s) 275
BseDI CCNNGG 1 cut(s) 110
BseLI CCNNNNNNNGG 1 cut(s) 96
BseMI GCAATG 1 cut(s) 275
BseRI GAGGAG 2 cut(s) 68, 157
BsiHKAI GWGCWC 1 cut(s) 164
BsiHKCI CYCGRG 2 cut(s) 157, 236
BsiSI CCGG 1 cut(s) 186
BslI CCNNNNNNNGG 1 cut(s) 96
BsmAI GTCTC 1 cut(s) 124
Bso31I GGTCTC 1 cut(s) 124
BsoBI CYCGRG 2 cut(s) 157, 236
Bsp1286I GDGCHC 1 cut(s) 164
BspMI ACCTGC 1 cut(s) 133
BspTNI GGTCTC 1 cut(s) 124
BsrDI GCAATG 1 cut(s) 275
BssECI CCNNGG 1 cut(s) 110
Bst4CI ACNGT 1 cut(s) 18
BstMAI GTCTC 1 cut(s) 124
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstV2I GAAGAC 1 cut(s) 278
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 63
BveI ACCTGC 1 cut(s) 133
CviJI RGCY 4 cut(s) 42, 80, 100, 176
CviKI_1 RGCY 4 cut(s) 42, 80, 100, 176
Eco31I GGTCTC 1 cut(s) 124
Eco88I CYCGRG 2 cut(s) 157, 236
FaiI YATR 4 cut(s) 51, 87, 179, 200
FblI GTMKAC 1 cut(s) 242
HapII CCGG 1 cut(s) 186
HindIII AAGCTT 1 cut(s) 78
HinfI GANTC 4 cut(s) 153, 230, 239, 289
HpaII CCGG 1 cut(s) 186
Hpy166II GTNNAC 1 cut(s) 243
Hpy188I TCNGA 3 cut(s) 152, 249, 270
Hpy188III TCNNGA 1 cut(s) 157
Hpy8I GTNNAC 1 cut(s) 243
HpyAV CCTTC 1 cut(s) 225
HpyCH4III ACNGT 1 cut(s) 18
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
LpnPI CCDG 2 cut(s) 138, 199
MaeIII GTNAC 1 cut(s) 59
MboII GAAGA 4 cut(s) 16, 19, 37, 283
MhlI GDGCHC 1 cut(s) 164
MlyI GAGTC 1 cut(s) 248
MnlI CCTC 8 cut(s) 46, 84, 120, 129, 145, 175, 178, 245
MseI TTAA 1 cut(s) 225
MspI CCGG 1 cut(s) 186
MwoI GCNNNNNNNGC 1 cut(s) 86
NmeAIII GCCGAG 1 cut(s) 91
PaeR7I CTCGAG 2 cut(s) 157, 236
PfeI GAWTC 3 cut(s) 153, 230, 289
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
PspXI VCTCGAGB 1 cut(s) 236
SaqAI TTAA 1 cut(s) 225
SchI GAGTC 1 cut(s) 248
SduI GDGCHC 1 cut(s) 164
SetI ASST 6 cut(s) 82, 121, 127, 167, 261, 265
Sfr274I CTCGAG 2 cut(s) 157, 236
SlaI CTCGAG 2 cut(s) 157, 236
SmlI CTYRAG 3 cut(s) 75, 157, 236
SmoI CTYRAG 3 cut(s) 75, 157, 236
TaaI ACNGT 1 cut(s) 18
TaqI TCGA 2 cut(s) 158, 237
TfiI GAWTC 3 cut(s) 153, 230, 289
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 1 cut(s) 70
TspDTI ATGAA 2 cut(s) 17, 207
TspRI CASTG 1 cut(s) 70
XhoI CTCGAG 2 cut(s) 157, 236
XmiI GTMKAC 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.