Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007791

Physical Location & Seq

Genomic Coordinates Reverse (-)

5493518 .. 5495726

Gene Structure 2209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g04670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGAATCATTATTCGTTTCTTGTGTCGTCTTCTTCCTTCCAAAGTCTTCGTCTTTTCTTCTCCCTAATCCATAACTGCTTCTCCAAATTAGGGTTCTCAATGGCACAAGCCATGGATGTTGGAGATGAAGTGATGGAAGGCACTATTCAGTCTCTTATCATGGATTCCCTAGAGTCTATTAAAAATGGTGAGGTACTTTCTCCAGAGGATAATGCTTGGGTTGATTCGTTCCTGATTAACGAATTTGATGTTTTTGATGACAACTGGGACTCTCTGAAAGGTGCCTTACAAGAAATCCTTGGTTCTCAGCCGCCTGAATCACTCAGCTCTTCTTCACTTGTAACTGATGGTTTAAGCGGAGGAACTGACATTGTGATACTTGCATCTCGTGAGCGGGCAGAAACAAAACAACTCCGAAGAAGAATCCGAAATGCTGTTCTTAGTATTGGTGAAGAAGCAGAAAGAAGTGATGAAGATGATGATGATGATGATGATGATGATGATGATGATGATGATGACATGCCAACCGATGAGGATTCGAATAATTTGCAGTCATCAACTTTTACGGGAAATCCATTTTTGCCAGGATACAAAGATGACCCGAGAATGACGGAAAACCTCGAGTTAGGAGCCGATATCAGCCCTTCATTATCTGAGACGGAGCCTTCAACTAAGGATATTTTCAGGGTTTGGGATTTGGATCTTCCTGTGGAGGAAGACGGCCTGGTAAGGCAGTTGAACAAGGCCCTCGAAGAAAGTTTGCCTCAACCGGTCCCATCAACTTTTGATGATTCTGATGTATGGAAAAGTATGAAAGTAGATTCGGTTGATGATCTAGTTTCTGGGATTGCAGATCTATCTTTGGATCTCAACTCTAGTTTTCTGGAAGCAAGAGCATTGTATTCAACCATGAATCTGCTACTTAGTGAGAGCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

313

Amino Acids

34.62

Weight (kDa)

4.05

Isoelectric Point (pI)

59.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38980
fragaria_vesca	FvH4_2g10380
malus_domestica	MD00G1040100.v1.1 MD10G1063700.v1.1
prunus_persica	Prupe.8G085200_v2.0.a1 Prupe.8G085200_v2.0.a1 Prupe.8G085200_v2.0.a1 Prupe.8G085200_v2.0.a1
pyrus_communis	pycom05g04670
rosa_chinensis	RchiOBHm_Chr6g0267851
rosa_laevigata	RLG00000013977
rosa_multiflora	Rmu_sc0005400.1_g000020
rosa_roxburghii	Rroxscaffold_7G00200440 Rroxscaffold_7G00200450
rosa_rugosa	Rorug06G0034400 Rorug06G0034500
rosa_samantha	Rh6AG156300 Rh6AG156400 Rh6BG157400 Rh6CG158600 Rh6DG142500 Rh6DG142600
rosa_wichuraiana	Rw6G013430 Rw6G013570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	281
AccBSI	CCGCTC	1 cut(s)	394
AciI	CCGC	3 cut(s)	311, 357, 394
AclWI	GGATC	2 cut(s)	708, 873
AcsI	RAATTY	1 cut(s)	242
AfaI	GTAC	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	90
AgeI	ACCGGT	1 cut(s)	769
AgsI	TTSAA	3 cut(s)	669, 739, 906
AjnI	CCWGG	2 cut(s)	583, 723
AjuI	GAANNNNNNNTTGG	2 cut(s)	77, 109
AluBI	AGCT	1 cut(s)	327
AluI	AGCT	1 cut(s)	327
Alw26I	GTCTC	2 cut(s)	156, 650
AlwI	GGATC	2 cut(s)	708, 873
Ama87I	CYCGRG	2 cut(s)	601, 620
AoxI	GGCC	2 cut(s)	721, 744
ApoI	RAATTY	1 cut(s)	242
ArsI	GACNNNNNNTTYG	2 cut(s)	34, 66
AsiGI	ACCGGT	1 cut(s)	769
AspS9I	GGNCC	2 cut(s)	745, 772
AsuHPI	GGTGA	2 cut(s)	200, 461
AsuII	TTCGAA	1 cut(s)	539
AvaI	CYCGRG	2 cut(s)	601, 620
AvaII	GGWCC	1 cut(s)	772
BanI	GGYRCC	1 cut(s)	281
BauI	CACGAG	1 cut(s)	387
BbsI	GAAGAC	3 cut(s)	21, 38, 723
BccI	CCATC	3 cut(s)	127, 341, 784
BceAI	ACGGC	1 cut(s)	736
BcgI	CGANNNNNNTGC	2 cut(s)	529, 563
BciT130I	CCWGG	2 cut(s)	585, 725
BciVI	GTATCC	1 cut(s)	581
BcoDI	GTCTC	2 cut(s)	156, 650
BfaI	CTAG	3 cut(s)	170, 836, 876
BfuI	GTATCC	1 cut(s)	581
BglII	AGATCT	1 cut(s)	853
BisI	GCNGC	1 cut(s)	311
BlsI	GCNGC	1 cut(s)	312
Bme1390I	CCNGG	2 cut(s)	585, 725
Bme18I	GGWCC	1 cut(s)	772
BmeT110I	CYCGRG	2 cut(s)	601, 620
BmgT120I	GGNCC	2 cut(s)	745, 772
BmiI	GGNNCC	4 cut(s)	283, 631, 663, 774
BmrFI	CCNGG	2 cut(s)	585, 725
BmrI	ACTGGG	1 cut(s)	274
BmsI	GCATC	1 cut(s)	392
BmuI	ACTGGG	1 cut(s)	274
BpiI	GAAGAC	3 cut(s)	21, 38, 723
BpmI	CTGGAG	1 cut(s)	186
Bpu14I	TTCGAA	1 cut(s)	539
BsaBI	GATNNNNATC	1 cut(s)	699
BsaJI	CCNNGG	2 cut(s)	111, 298
BsaWI	WCCGGW	1 cut(s)	769
BsaXI	ACNNNNNCTCC	4 cut(s)	65, 95, 114, 144
Bsc4I	CCNNNNNNNGG	1 cut(s)	90
Bse118I	RCCGGY	1 cut(s)	769
Bse1I	ACTGG	1 cut(s)	269
Bse8I	GATNNNNATC	1 cut(s)	699
BseBI	CCWGG	2 cut(s)	585, 725
BseDI	CCNNGG	2 cut(s)	111, 298
BseGI	GGATG	1 cut(s)	121
BseJI	GATNNNNATC	1 cut(s)	699
BseLI	CCNNNNNNNGG	1 cut(s)	90
BseMII	CTCAG	3 cut(s)	320, 337, 645
BseNI	ACTGG	1 cut(s)	269
BshFI	GGCC	2 cut(s)	723, 746
BshNI	GGYRCC	1 cut(s)	281
BshTI	ACCGGT	1 cut(s)	769
BsiHKCI	CYCGRG	2 cut(s)	601, 620
BsiSI	CCGG	1 cut(s)	770
BslFI	GGGAC	2 cut(s)	281, 758
BslI	CCNNNNNNNGG	1 cut(s)	90
BsmAI	GTCTC	2 cut(s)	156, 650
BsmBI	CGTCTC	1 cut(s)	650
BsmFI	GGGAC	2 cut(s)	281, 758
BsnI	GGCC	2 cut(s)	723, 746
BsoBI	CYCGRG	2 cut(s)	601, 620
Bsp119I	TTCGAA	1 cut(s)	539
Bsp143I	GATC	4 cut(s)	700, 832, 853, 865
Bsp19I	CCATGG	1 cut(s)	111
BspACI	CCGC	3 cut(s)	311, 357, 394
BspANI	GGCC	2 cut(s)	723, 746
BspCNI	CTCAG	3 cut(s)	319, 336, 646
BspLI	GGNNCC	4 cut(s)	283, 631, 663, 774
BspPI	GGATC	2 cut(s)	708, 873
BspQI	GCTCTTC	1 cut(s)	334
BspT104I	TTCGAA	1 cut(s)	539
BspT107I	GGYRCC	1 cut(s)	281
BsrBI	CCGCTC	1 cut(s)	394
BsrFI	RCCGGY	1 cut(s)	769
BsrI	ACTGG	1 cut(s)	269
BssAI	RCCGGY	1 cut(s)	769
BssECI	CCNNGG	2 cut(s)	111, 298
BssMI	GATC	4 cut(s)	700, 832, 853, 865
BssSI	CACGAG	1 cut(s)	387
BssT1I	CCWWGG	2 cut(s)	111, 298
Bst2BI	CACGAG	1 cut(s)	387
Bst2UI	CCWGG	2 cut(s)	585, 725
Bst6I	CTCTTC	1 cut(s)	334
BstBI	TTCGAA	1 cut(s)	539
BstC8I	GCNNGC	1 cut(s)	396
BstDEI	CTNAG	6 cut(s)	306, 323, 440, 654, 672, 923
BstDSI	CCRYGG	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	121
BstKTI	GATC	4 cut(s)	703, 835, 856, 868
BstMAI	GTCTC	2 cut(s)	156, 650
BstMBI	GATC	4 cut(s)	700, 832, 853, 865
BstNI	CCWGG	2 cut(s)	585, 725
BstNSI	RCATGY	1 cut(s)	523
BstSCI	CCNGG	2 cut(s)	583, 723
BstV2I	GAAGAC	3 cut(s)	21, 38, 723
BstX2I	RGATCY	3 cut(s)	700, 853, 865
BstYI	RGATCY	3 cut(s)	700, 853, 865
BsuI	GTATCC	1 cut(s)	581
BsuRI	GGCC	2 cut(s)	723, 746
BtgI	CCRYGG	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	396
Cfr10I	RCCGGY	1 cut(s)	769
Cfr13I	GGNCC	2 cut(s)	745, 772
Csp6I	GTAC	1 cut(s)	194
CspAI	ACCGGT	1 cut(s)	769
CviAII	CATG	4 cut(s)	112, 160, 520, 910
CviJI	RGCY	9 cut(s)	110, 310, 327, 632, 642, 664, 723, 746, 933
CviKI_1	RGCY	9 cut(s)	110, 310, 327, 632, 642, 664, 723, 746, 933
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	6 cut(s)	306, 323, 440, 654, 672, 923
DpnI	GATC	4 cut(s)	702, 834, 855, 867
DpnII	GATC	4 cut(s)	700, 832, 853, 865
Eam1104I	CTCTTC	1 cut(s)	334
EarI	CTCTTC	1 cut(s)	334
Eco130I	CCWWGG	2 cut(s)	111, 298
Eco32I	GATATC	1 cut(s)	637
Eco47I	GGWCC	1 cut(s)	772
Eco88I	CYCGRG	2 cut(s)	601, 620
EcoO109I	RGGNCCY	1 cut(s)	745
EcoRII	CCWGG	2 cut(s)	583, 723
EcoRV	GATATC	1 cut(s)	637
EcoT14I	CCWWGG	2 cut(s)	111, 298
ErhI	CCWWGG	2 cut(s)	111, 298
Esp3I	CGTCTC	1 cut(s)	650
FaeI	CATG	4 cut(s)	115, 163, 523, 913
FaiI	YATR	7 cut(s)	72, 113, 161, 521, 802, 812, 911
FalI	AAGNNNNNCTT	2 cut(s)	282, 314
FaqI	GGGAC	2 cut(s)	281, 758
FatI	CATG	4 cut(s)	111, 159, 519, 909
FauI	CCCGC	1 cut(s)	387
Fnu4HI	GCNGC	1 cut(s)	311
FokI	GGATG	1 cut(s)	128
Fsp4HI	GCNGC	1 cut(s)	311
FspBI	CTAG	3 cut(s)	170, 836, 876
GluI	GCNGC	1 cut(s)	311
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	2 cut(s)	723, 746
HapII	CCGG	1 cut(s)	770
Hin1II	CATG	4 cut(s)	115, 163, 523, 913
HpaII	CCGG	1 cut(s)	770
HphI	GGTGA	2 cut(s)	200, 461
Hpy188I	TCNGA	5 cut(s)	276, 416, 428, 655, 796
Hpy188III	TCNNGA	4 cut(s)	203, 232, 389, 884
HpyAV	CCTTC	4 cut(s)	46, 131, 654, 675
HpyCH4V	TGCA	3 cut(s)	383, 550, 851
HpyF3I	CTNAG	6 cut(s)	306, 323, 440, 654, 672, 923
Hsp92II	CATG	4 cut(s)	115, 163, 523, 913
Kzo9I	GATC	4 cut(s)	700, 832, 853, 865
LguI	GCTCTTC	1 cut(s)	334
LmnI	GCTCC	2 cut(s)	629, 661
LweI	GCATC	1 cut(s)	392
MaeI	CTAG	3 cut(s)	170, 836, 876
MaeIII	GTNAC	1 cut(s)	340
MalI	GATC	4 cut(s)	702, 834, 855, 867
MbiI	CCGCTC	1 cut(s)	394
MboI	GATC	4 cut(s)	700, 832, 853, 865
MflI	RGATCY	3 cut(s)	700, 853, 865
MluCI	AATT	3 cut(s)	86, 242, 544
MlyI	GAGTC	2 cut(s)	182, 263
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	8 cut(s)	184, 199, 353, 526, 629, 706, 758, 774
MseI	TTAA	3 cut(s)	180, 237, 353
MspI	CCGG	1 cut(s)	770
MspR9I	CCNGG	2 cut(s)	585, 725
MvaI	CCWGG	2 cut(s)	585, 725
NcoI	CCATGG	1 cut(s)	111
NdeII	GATC	4 cut(s)	700, 832, 853, 865
NlaIII	CATG	4 cut(s)	115, 163, 523, 913
NlaIV	GGNNCC	4 cut(s)	283, 631, 663, 774
NspI	RCATGY	1 cut(s)	523
NspV	TTCGAA	1 cut(s)	539
PaeR7I	CTCGAG	1 cut(s)	620
PciSI	GCTCTTC	1 cut(s)	334
PfeI	GAWTC	9 cut(s)	4, 164, 224, 317, 423, 536, 791, 821, 913
PinAI	ACCGGT	1 cut(s)	769
PkrI	GCNGC	1 cut(s)	312
PleI	GAGTC	2 cut(s)	181, 263
PpsI	GAGTC	2 cut(s)	181, 263
Psp6I	CCWGG	2 cut(s)	583, 723
PspGI	CCWGG	2 cut(s)	583, 723
PspN4I	GGNNCC	4 cut(s)	283, 631, 663, 774
PspPI	GGNCC	2 cut(s)	745, 772
PspXI	VCTCGAGB	1 cut(s)	620
PsuI	RGATCY	3 cut(s)	700, 853, 865
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
SapI	GCTCTTC	1 cut(s)	334
SaqAI	TTAA	3 cut(s)	180, 237, 353
SatI	GCNGC	1 cut(s)	311
Sau3AI	GATC	4 cut(s)	700, 832, 853, 865
Sau96I	GGNCC	2 cut(s)	745, 772
SchI	GAGTC	2 cut(s)	182, 263
ScrFI	CCNGG	2 cut(s)	585, 725
SetI	ASST	4 cut(s)	195, 283, 329, 621
SfaNI	GCATC	1 cut(s)	392
Sfr274I	CTCGAG	1 cut(s)	620
SfuI	TTCGAA	1 cut(s)	539
SinI	GGWCC	1 cut(s)	772
SlaI	CTCGAG	1 cut(s)	620
SmlI	CTYRAG	1 cut(s)	620
SmoI	CTYRAG	1 cut(s)	620
Sse9I	AATT	3 cut(s)	86, 242, 544
SsiI	CCGC	3 cut(s)	311, 357, 394
SspMI	CTAG	3 cut(s)	170, 836, 876
StyD4I	CCNGG	2 cut(s)	583, 723
StyI	CCWWGG	2 cut(s)	111, 298
TaqI	TCGA	3 cut(s)	539, 621, 750
TasI	AATT	3 cut(s)	86, 242, 544
TauI	GCSGC	1 cut(s)	313
TfiI	GAWTC	9 cut(s)	4, 164, 224, 317, 423, 536, 791, 821, 913
Tru1I	TTAA	3 cut(s)	180, 237, 353
Tru9I	TTAA	3 cut(s)	180, 237, 353
TspDTI	ATGAA	6 cut(s)	17, 141, 486, 636, 827, 926
TspGWI	ACGGA	2 cut(s)	626, 674
VpaK11BI	GGWCC	1 cut(s)	772
XapI	RAATTY	1 cut(s)	242
XceI	RCATGY	1 cut(s)	523
XhoI	CTCGAG	1 cut(s)	620
XspI	CTAG	3 cut(s)	170, 836, 876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.