Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0007791

Physical Location & Seq

Genomic Coordinates Reverse (-)

11815243 .. 11818543

Gene Structure 3301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G085200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCACAAGCCATGGATGTTGGAGGTGAGGTGATGGAAAGCACTATTCCTTCTCTTATTGTAGATTTTGTTCAGAAAGGAGAGGTACTTTCTCCAGAAGATAGTGCTTGGGTTGATTCCTGTCTGATTAGTGAATCTGATATTTTGGATGATGACTGGTCTTCTCTGAAAGGTGCCCTGCTAGAAATCCTTAATTCTCAGCCTGAACCACTAAGCTATTATGCACTTCCTTCCGGTGAGGGGGCAGATACAGAACGCTTCCAAAGAAGAACCCAAAGGAGTCTGCTTCCCATTAATGAAGACGCAGAGAGTGGAGATGATGATATGCCCACCGATGAGGATGCTAATAATTTGCAGTCATCAACTTTTACGGGAAATCCATTCTTGCCAGGTTACCGTGATGATGACCTTGGAGTGACTGGAAACCTTGAGTTAGGAGCCAATGTTGTTTCTACAGTATCTGAGATGGAGCCTTCAACTGAGGATATTTTCAGGGTTTGGGATTTGGATGTTCCAGCAGAGGAAGATGATCTTGTTAGGCAGTTGGAAAAGGCCCTTGAAGAGAGTTCACTTCAACCGCTCCCACCAACTTTCGATGATTCTGATGTGTGGAAAAATTTGAAAGTAGATTCGGTTGATGCTCTAATTGCTGGAATTGCAGACCTGTCTTTGGTTCAAATTTCCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

230

Amino Acids

25.06

Weight (kDa)

4.05

Isoelectric Point (pI)

55.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38980
fragaria_vesca	FvH4_2g10380
malus_domestica	MD00G1040100.v1.1 MD10G1063700.v1.1
prunus_persica	Prupe.8G085200_v2.0.a1 Prupe.8G085200_v2.0.a1 Prupe.8G085200_v2.0.a1 Prupe.8G085200_v2.0.a1
pyrus_communis	pycom05g04670
rosa_chinensis	RchiOBHm_Chr6g0267851
rosa_laevigata	RLG00000013977
rosa_multiflora	Rmu_sc0005400.1_g000020
rosa_roxburghii	Rroxscaffold_7G00200440 Rroxscaffold_7G00200450
rosa_rugosa	Rorug06G0034400 Rorug06G0034500
rosa_samantha	Rh6AG156300 Rh6AG156400 Rh6BG157400 Rh6CG158600 Rh6DG142500 Rh6DG142600
rosa_wichuraiana	Rw6G013430 Rw6G013570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	173
AccBSI	CCGCTC	1 cut(s)	580
AciI	CCGC	1 cut(s)	578
AcsI	RAATTY	2 cut(s)	616, 678
AfaI	GTAC	1 cut(s)	87
AfiI	CCNNNNNNNGG	2 cut(s)	240, 670
AgsI	TTSAA	5 cut(s)	477, 560, 575, 622, 677
AjnI	CCWGG	1 cut(s)	388
AluBI	AGCT	1 cut(s)	216
AluI	AGCT	1 cut(s)	216
AlwNI	CAGNNNCTG	1 cut(s)	461
AoxI	GGCC	1 cut(s)	552
ApoI	RAATTY	2 cut(s)	616, 678
AseI	ATTAAT	1 cut(s)	294
AspS9I	GGNCC	1 cut(s)	553
AsuHPI	GGTGA	3 cut(s)	38, 43, 248
BaeGI	GKGCMC	1 cut(s)	178
BanI	GGYRCC	1 cut(s)	173
BbsI	GAAGAC	2 cut(s)	153, 306
BccI	CCATC	2 cut(s)	28, 460
BcgI	CGANNNNNNTGC	2 cut(s)	323, 357
BciT130I	CCWGG	1 cut(s)	390
BfaI	CTAG	1 cut(s)	182
BfmI	CTRYAG	1 cut(s)	453
Bme1390I	CCNGG	1 cut(s)	390
BmgT120I	GGNCC	1 cut(s)	553
BmiI	GGNNCC	3 cut(s)	175, 439, 471
BmrFI	CCNGG	1 cut(s)	390
BmsI	GCATC	2 cut(s)	331, 628
BpiI	GAAGAC	2 cut(s)	153, 306
BpmI	CTGGAG	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	449
BsaJI	CCNNGG	2 cut(s)	12, 409
BsaWI	WCCGGW	1 cut(s)	233
BsaXI	ACNNNNNCTCC	4 cut(s)	15, 45, 429, 459
Bsc4I	CCNNNNNNNGG	2 cut(s)	240, 670
Bse1I	ACTGG	2 cut(s)	161, 424
BseBI	CCWGG	1 cut(s)	390
BseDI	CCNNGG	2 cut(s)	12, 409
BseGI	GGATG	4 cut(s)	22, 154, 346, 514
BseLI	CCNNNNNNNGG	2 cut(s)	240, 670
BseMII	CTCAG	3 cut(s)	212, 453, 471
BseNI	ACTGG	2 cut(s)	161, 424
BseSI	GKGCMC	1 cut(s)	178
BshFI	GGCC	1 cut(s)	554
BshNI	GGYRCC	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	234
BslI	CCNNNNNNNGG	2 cut(s)	240, 670
BsnI	GGCC	1 cut(s)	554
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp143I	GATC	1 cut(s)	529
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	1 cut(s)	578
BspANI	GGCC	1 cut(s)	554
BspCNI	CTCAG	3 cut(s)	211, 454, 472
BspLI	GGNNCC	3 cut(s)	175, 439, 471
BspT107I	GGYRCC	1 cut(s)	173
BsrBI	CCGCTC	1 cut(s)	580
BsrI	ACTGG	2 cut(s)	161, 424
BssECI	CCNNGG	2 cut(s)	12, 409
BssMI	GATC	1 cut(s)	529
BssT1I	CCWWGG	2 cut(s)	12, 409
Bst2UI	CCWGG	1 cut(s)	390
Bst4CI	ACNGT	2 cut(s)	398, 457
Bst6I	CTCTTC	1 cut(s)	555
BstDEI	CTNAG	4 cut(s)	198, 212, 462, 480
BstDSI	CCRYGG	1 cut(s)	12
BstEII	GGTNACC	1 cut(s)	392
BstF5I	GGATG	4 cut(s)	22, 154, 346, 514
BstKTI	GATC	1 cut(s)	532
BstMBI	GATC	1 cut(s)	529
BstMWI	GCNNNNNNNGC	2 cut(s)	647, 656
BstNI	CCWGG	1 cut(s)	390
BstPI	GGTNACC	1 cut(s)	392
BstSCI	CCNGG	1 cut(s)	388
BstSFI	CTRYAG	1 cut(s)	453
BstSLI	GKGCMC	1 cut(s)	178
BstV2I	GAAGAC	2 cut(s)	153, 306
BsuRI	GGCC	1 cut(s)	554
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	4 cut(s)	22, 154, 346, 514
CaiI	CAGNNNCTG	1 cut(s)	461
Cfr13I	GGNCC	1 cut(s)	553
CseI	GACGC	1 cut(s)	311
Csp6I	GTAC	1 cut(s)	86
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	6 cut(s)	11, 202, 216, 440, 472, 554
CviKI_1	RGCY	6 cut(s)	11, 202, 216, 440, 472, 554
CviQI	GTAC	1 cut(s)	86
DdeI	CTNAG	4 cut(s)	198, 212, 462, 480
DpnI	GATC	1 cut(s)	531
DpnII	GATC	1 cut(s)	529
Eam1104I	CTCTTC	1 cut(s)	555
EarI	CTCTTC	1 cut(s)	555
Eco130I	CCWWGG	2 cut(s)	12, 409
Eco91I	GGTNACC	1 cut(s)	392
EcoO109I	RGGNCCY	1 cut(s)	553
EcoO65I	GGTNACC	1 cut(s)	392
EcoRII	CCWGG	1 cut(s)	388
EcoT14I	CCWWGG	2 cut(s)	12, 409
ErhI	CCWWGG	2 cut(s)	12, 409
FaeI	CATG	1 cut(s)	16
FaiI	YATR	3 cut(s)	14, 222, 326
FalI	AAGNNNNNCTT	2 cut(s)	516, 548
FatI	CATG	1 cut(s)	12
FokI	GGATG	4 cut(s)	29, 161, 353, 521
FspBI	CTAG	1 cut(s)	182
GsuI	CTGGAG	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	554
HapII	CCGG	1 cut(s)	234
HgaI	GACGC	1 cut(s)	311
Hin1II	CATG	1 cut(s)	16
HinfI	GANTC	5 cut(s)	116, 134, 280, 599, 629
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	3 cut(s)	38, 43, 248
Hpy166II	GTNNAC	1 cut(s)	569
Hpy188I	TCNGA	6 cut(s)	75, 126, 139, 168, 463, 604
Hpy188III	TCNNGA	2 cut(s)	95, 684
Hpy8I	GTNNAC	1 cut(s)	569
HpyAV	CCTTC	3 cut(s)	60, 240, 483
HpyCH4III	ACNGT	2 cut(s)	398, 457
HpyCH4V	TGCA	3 cut(s)	224, 355, 659
HpyF10VI	GCNNNNNNNGC	2 cut(s)	647, 656
HpyF3I	CTNAG	4 cut(s)	198, 212, 462, 480
Hsp92II	CATG	1 cut(s)	16
Kzo9I	GATC	1 cut(s)	529
LmnI	GCTCC	3 cut(s)	437, 469, 585
LweI	GCATC	2 cut(s)	331, 628
MaeI	CTAG	1 cut(s)	182
MaeIII	GTNAC	2 cut(s)	392, 415
MalI	GATC	1 cut(s)	531
MbiI	CCGCTC	1 cut(s)	580
MboI	GATC	1 cut(s)	529
MboII	GAAGA	6 cut(s)	110, 153, 279, 311, 536, 572
MhlI	GDGCHC	1 cut(s)	178
MluCI	AATT	6 cut(s)	193, 349, 616, 645, 654, 678
MlyI	GAGTC	1 cut(s)	289
MmeI	TCCRAC	1 cut(s)	525
MnlI	CCTC	7 cut(s)	17, 22, 76, 232, 331, 475, 514
MseI	TTAA	2 cut(s)	192, 294
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	1 cut(s)	390
MvaI	CCWGG	1 cut(s)	390
MwoI	GCNNNNNNNGC	2 cut(s)	647, 656
NcoI	CCATGG	1 cut(s)	12
NdeII	GATC	1 cut(s)	529
NlaIII	CATG	1 cut(s)	16
NlaIV	GGNNCC	3 cut(s)	175, 439, 471
NmuCI	GTSAC	1 cut(s)	415
PfeI	GAWTC	4 cut(s)	116, 134, 599, 629
PleI	GAGTC	1 cut(s)	288
PpsI	GAGTC	1 cut(s)	288
PshBI	ATTAAT	1 cut(s)	294
Psp6I	CCWGG	1 cut(s)	388
PspEI	GGTNACC	1 cut(s)	392
PspGI	CCWGG	1 cut(s)	388
PspN4I	GGNNCC	3 cut(s)	175, 439, 471
PspPI	GGNCC	1 cut(s)	553
PsrI	GAACNNNNNNTAC	2 cut(s)	54, 86
PstNI	CAGNNNCTG	1 cut(s)	461
RsaI	GTAC	1 cut(s)	87
RsaNI	GTAC	1 cut(s)	86
SaqAI	TTAA	2 cut(s)	192, 294
Sau3AI	GATC	1 cut(s)	529
Sau96I	GGNCC	1 cut(s)	553
SchI	GAGTC	1 cut(s)	289
ScrFI	CCNGG	1 cut(s)	390
SduI	GDGCHC	1 cut(s)	178
SetI	ASST	9 cut(s)	28, 33, 87, 175, 218, 394, 411, 429, 666
SfaNI	GCATC	2 cut(s)	331, 628
SfcI	CTRYAG	1 cut(s)	453
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	6 cut(s)	193, 349, 616, 645, 654, 678
SsiI	CCGC	1 cut(s)	578
SspMI	CTAG	1 cut(s)	182
StyD4I	CCNGG	1 cut(s)	388
StyI	CCWWGG	2 cut(s)	12, 409
TaaI	ACNGT	2 cut(s)	398, 457
TaqI	TCGA	1 cut(s)	594
TasI	AATT	6 cut(s)	193, 349, 616, 645, 654, 678
TfiI	GAWTC	4 cut(s)	116, 134, 599, 629
Tru1I	TTAA	2 cut(s)	192, 294
Tru9I	TTAA	2 cut(s)	192, 294
TseFI	GTSAC	1 cut(s)	415
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	1 cut(s)	312
VspI	ATTAAT	1 cut(s)	294
XapI	RAATTY	2 cut(s)	616, 678
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.