Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007791

Physical Location & Seq

Genomic Coordinates Forward (+)

4221169 .. 4222398

Gene Structure 1230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0034400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGGGAATGTTTCCTTTGCTTGGAGGAGTATTCTGAAGGGACGGGATGTGTTGAGCAAAGGTCTTCGGTTCAAAGTTGGGAATGGTGCTTCTATTAGGGTGTGGGGTGATCCTTGGCTACCACTTCCCCATCAATTTAAGCCTTTTTCTCCTCCGGTTGAAGGCCTTGAAGACTTATTGGTAGCTGACTTAATTGATTGTGATCAAAATGAATGGGATTTGCAGTTTGTGAAAACTATACTTTATGAGAGAGAGACGGAGATTATTGGTGGCATCCCTCTTAGCATTCGGCCATCAATTGATAAATGGATTTGGCACTATGACAAAAAAGGTCAATACTCAGTTAGGAGTGGATACCATGCATACAAACGCTTCATGCACGCAACTGATCGTGCTTCTAGTTCGAATAATATGGCGTTGGCTAGAGATTGTATCTGGAGGCAGGTGTGGGGTGCCCATGTTCCCCCCAAGGTACGTACTTTTGCATGGAGATTAATTAAAGGTGTTGTTCCTACTAGATGGGCATTATCCAAGAAGTGCAACATTCCAGATCTTTCTTGTCCTTTTTGCAATTTTAATTTGGAGGACGACATTCACCTTTTCAAAGACTGCATGTGGGCCAAGGAGTTTTGGTTCTTTGGACCTTTGAATTTGAGGTCAAGAGAGATGCATACGCATAGTTTGTTGGAATGGATTCAGCATGTGTTGGAGAGTCACACTCAACAACAACATGACCTTTTCATCATGCTACTCTGGGCATTGTGGACGGAACGTAATAATGCAGTTTGGAAGGGCAATGTGTTTAATCCCATCAATGCGGCATGTTGGGCATCGAAGCATCTAGAAGATTACCGGAAAGTGCATACTGGCAAGGAGAAAAAGGGACAGCCAAGGCCTAAGACCCGATGGCAGCACCCTCCAAGTGGGAGACTGAAATTGAATGTAGATGGAGCTTTCCATATGGACACAGGACAAGGAGTCATTAGGGCAGTTATCAGAGATGAAAATGGTATGTTTTTAGCTGCTATTGCACGTCCCTTTTCTCTTGTACGTTCTGCTTTGCATATGGAGATTGAGGCTATGAGAACGGGTCTTCTATTGGCTATACATCAGGGCATGACTAATGTTGACATTGAAACTGATTGTGCTGCTGTTGTTACCGCACTTAATGGTGAGATGGAGGATCTTTCAGAGATTGGCAGTATTGTAGAGGACTGTAAGACCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

409

Amino Acids

47.1

Weight (kDa)

8.49

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	141 - 211	1.4e-12	zinc-binding in reverse transcriptase
RVT_3	PF13456	314 - 407	1.8e-17	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38980
fragaria_vesca	FvH4_2g10380
malus_domestica	MD00G1040100.v1.1 MD10G1063700.v1.1
prunus_persica	Prupe.8G085200_v2.0.a1 Prupe.8G085200_v2.0.a1 Prupe.8G085200_v2.0.a1 Prupe.8G085200_v2.0.a1
pyrus_communis	pycom05g04670
rosa_chinensis	RchiOBHm_Chr6g0267851
rosa_laevigata	RLG00000013977
rosa_multiflora	Rmu_sc0005400.1_g000020
rosa_roxburghii	Rroxscaffold_7G00200440 Rroxscaffold_7G00200450
rosa_rugosa	Rorug06G0034400 Rorug06G0034500
rosa_samantha	Rh6AG156300 Rh6AG156400 Rh6BG157400 Rh6CG158600 Rh6DG142500 Rh6DG142600
rosa_wichuraiana	Rw6G013430 Rw6G013570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	433
Acc36I	ACCTGC	1 cut(s)	433
AccB1I	GGYRCC	1 cut(s)	452
AciI	CCGC	2 cut(s)	818, 1161
AclWI	GGATC	2 cut(s)	104, 1191
AcoI	YGGCCR	1 cut(s)	290
AcsI	RAATTY	1 cut(s)	649
AcuI	CTGAAG	1 cut(s)	56
AfaI	GTAC	3 cut(s)	474, 478, 1050
AfiI	CCNNNNNNNGG	3 cut(s)	21, 161, 923
AgsI	TTSAA	7 cut(s)	73, 161, 170, 604, 649, 940, 1136
AhdI	GACNNNNNGTC	1 cut(s)	977
AjiI	CACGTC	1 cut(s)	1034
AloI	GAACNNNNNNTCC	2 cut(s)	617, 649
AluBI	AGCT	3 cut(s)	185, 953, 1022
AluI	AGCT	3 cut(s)	185, 953, 1022
Alw26I	GTCTC	2 cut(s)	248, 922
AlwI	GGATC	2 cut(s)	104, 1191
AoxI	GGCC	4 cut(s)	163, 290, 618, 893
ApeKI	GCWGC	3 cut(s)	910, 1022, 1148
ApoI	RAATTY	1 cut(s)	649
AseI	ATTAAT	1 cut(s)	494
Asp700I	GAANNNNTTC	1 cut(s)	693
AspS9I	GGNCC	2 cut(s)	618, 641
AsuHPI	GGTGA	3 cut(s)	119, 587, 1184
AsuII	TTCGAA	1 cut(s)	404
AvaII	GGWCC	1 cut(s)	641
BaeGI	GKGCMC	1 cut(s)	457
BanI	GGYRCC	1 cut(s)	452
BbsI	GAAGAC	3 cut(s)	56, 177, 1085
BbvI	GCAGC	3 cut(s)	922, 1009, 1135
BccI	CCATC	7 cut(s)	138, 301, 513, 818, 900, 941, 1171
BciVI	GTATCC	1 cut(s)	347
BclI	TGATCA	1 cut(s)	202
BcoDI	GTCTC	2 cut(s)	248, 922
BfaI	CTAG	4 cut(s)	399, 423, 516, 842
BfuAI	ACCTGC	1 cut(s)	433
BfuI	GTATCC	1 cut(s)	347
BglII	AGATCT	1 cut(s)	550
BisI	GCNGC	4 cut(s)	819, 911, 1023, 1149
BlsI	GCNGC	4 cut(s)	820, 912, 1024, 1150
Bme18I	GGWCC	1 cut(s)	641
BmeRI	GACNNNNNGTC	1 cut(s)	977
BmgBI	CACGTC	1 cut(s)	1034
BmgT120I	GGNCC	2 cut(s)	618, 641
BmiI	GGNNCC	1 cut(s)	454
BmsI	GCATC	4 cut(s)	282, 657, 839, 847
BpiI	GAAGAC	3 cut(s)	56, 177, 1085
BplI	GAGNNNNNCTC	2 cut(s)	703, 735
BpmI	CTGGAG	1 cut(s)	457
Bpu14I	TTCGAA	1 cut(s)	404
BsaAI	YACGTR	1 cut(s)	476
BsaBI	GATNNNNATC	1 cut(s)	201
BsaJI	CCNNGG	4 cut(s)	113, 468, 621, 890
BsaWI	WCCGGW	2 cut(s)	154, 852
BsaXI	ACNNNNNCTCC	2 cut(s)	617, 647
Bsc4I	CCNNNNNNNGG	3 cut(s)	21, 161, 923
Bse1I	ACTGG	1 cut(s)	871
Bse3DI	GCAATG	1 cut(s)	802
Bse8I	GATNNNNATC	1 cut(s)	201
BseDI	CCNNGG	4 cut(s)	113, 468, 621, 890
BseGI	GGATG	2 cut(s)	52, 273
BseJI	GATNNNNATC	1 cut(s)	201
BseLI	CCNNNNNNNGG	3 cut(s)	21, 161, 923
BseMI	GCAATG	1 cut(s)	802
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	1 cut(s)	871
BseRI	GAGGAG	2 cut(s)	40, 141
BseSI	GKGCMC	1 cut(s)	457
BseXI	GCAGC	3 cut(s)	922, 1009, 1135
BshFI	GGCC	4 cut(s)	165, 292, 620, 895
BshNI	GGYRCC	1 cut(s)	452
BsiSI	CCGG	2 cut(s)	155, 853
BslFI	GGGAC	3 cut(s)	54, 897, 1020
BslI	CCNNNNNNNGG	3 cut(s)	21, 161, 923
BsmAI	GTCTC	2 cut(s)	248, 922
BsmBI	CGTCTC	1 cut(s)	248
BsmFI	GGGAC	3 cut(s)	54, 897, 1020
BsmI	GAATGC	1 cut(s)	285
BsnI	GGCC	4 cut(s)	165, 292, 620, 895
Bsp119I	TTCGAA	1 cut(s)	404
Bsp1286I	GDGCHC	1 cut(s)	457
Bsp143I	GATC	5 cut(s)	109, 202, 388, 550, 1183
BspACI	CCGC	2 cut(s)	818, 1161
BspANI	GGCC	4 cut(s)	165, 292, 620, 895
BspCNI	CTCAG	1 cut(s)	353
BspLI	GGNNCC	1 cut(s)	454
BspMI	ACCTGC	1 cut(s)	433
BspPI	GGATC	2 cut(s)	104, 1191
BspT104I	TTCGAA	1 cut(s)	404
BspT107I	GGYRCC	1 cut(s)	452
BsrDI	GCAATG	1 cut(s)	802
BsrI	ACTGG	1 cut(s)	871
BssECI	CCNNGG	4 cut(s)	113, 468, 621, 890
BssMI	GATC	5 cut(s)	109, 202, 388, 550, 1183
BssT1I	CCWWGG	4 cut(s)	113, 468, 621, 890
Bst4CI	ACNGT	1 cut(s)	1217
BstBAI	YACGTR	1 cut(s)	476
BstBI	TTCGAA	1 cut(s)	404
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	3 cut(s)	281, 340, 897
BstF5I	GGATG	2 cut(s)	52, 273
BstKTI	GATC	5 cut(s)	112, 205, 391, 553, 1186
BstMAI	GTCTC	2 cut(s)	248, 922
BstMBI	GATC	5 cut(s)	109, 202, 388, 550, 1183
BstMWI	GCNNNNNNNGC	2 cut(s)	827, 1028
BstNSI	RCATGY	3 cut(s)	616, 704, 825
BstSLI	GKGCMC	1 cut(s)	457
BstSNI	TACGTA	1 cut(s)	476
BstV1I	GCAGC	3 cut(s)	922, 1009, 1135
BstV2I	GAAGAC	3 cut(s)	56, 177, 1085
BstX2I	RGATCY	2 cut(s)	550, 1183
BstYI	RGATCY	2 cut(s)	550, 1183
BsuI	GTATCC	1 cut(s)	347
BsuRI	GGCC	4 cut(s)	165, 292, 620, 895
BtrI	CACGTC	1 cut(s)	1034
BtsCI	GGATG	2 cut(s)	52, 273
BveI	ACCTGC	1 cut(s)	433
Cac8I	GCNNGC	1 cut(s)	381
Cfr13I	GGNCC	2 cut(s)	618, 641
Csp6I	GTAC	3 cut(s)	473, 477, 1049
CviQI	GTAC	3 cut(s)	473, 477, 1049
DdeI	CTNAG	3 cut(s)	281, 340, 897
DpnI	GATC	5 cut(s)	111, 204, 390, 552, 1185
DpnII	GATC	5 cut(s)	109, 202, 388, 550, 1183
DriI	GACNNNNNGTC	1 cut(s)	977
EaeI	YGGCCR	1 cut(s)	290
Eam1105I	GACNNNNNGTC	1 cut(s)	977
Eco105I	TACGTA	1 cut(s)	476
Eco130I	CCWWGG	4 cut(s)	113, 468, 621, 890
Eco147I	AGGCCT	2 cut(s)	165, 895
Eco47I	GGWCC	1 cut(s)	641
Eco57I	CTGAAG	1 cut(s)	56
EcoT14I	CCWWGG	4 cut(s)	113, 468, 621, 890
EcoT22I	ATGCAT	2 cut(s)	364, 672
ErhI	CCWWGG	4 cut(s)	113, 468, 621, 890
Esp3I	CGTCTC	1 cut(s)	248
FaqI	GGGAC	3 cut(s)	54, 897, 1020
FauNDI	CATATG	2 cut(s)	960, 1065
FbaI	TGATCA	1 cut(s)	202
Fnu4HI	GCNGC	4 cut(s)	819, 911, 1023, 1149
FokI	GGATG	2 cut(s)	59, 260
Fsp4HI	GCNGC	4 cut(s)	819, 911, 1023, 1149
FspBI	CTAG	4 cut(s)	399, 423, 516, 842
GluI	GCNGC	4 cut(s)	819, 911, 1023, 1149
GsuI	CTGGAG	1 cut(s)	457
HaeIII	GGCC	4 cut(s)	165, 292, 620, 895
HapII	CCGG	2 cut(s)	155, 853
HincII	GTYRAC	1 cut(s)	1129
HindII	GTYRAC	1 cut(s)	1129
HinfI	GANTC	3 cut(s)	694, 712, 978
HpaII	CCGG	2 cut(s)	155, 853
HphI	GGTGA	3 cut(s)	119, 587, 1184
Hpy166II	GTNNAC	2 cut(s)	765, 1129
Hpy188I	TCNGA	3 cut(s)	36, 998, 1192
Hpy188III	TCNNGA	4 cut(s)	436, 548, 660, 842
Hpy8I	GTNNAC	2 cut(s)	765, 1129
HpyAV	CCTTC	3 cut(s)	31, 155, 784
HpyCH4III	ACNGT	1 cut(s)	1217
HpyCH4IV	ACGT	4 cut(s)	475, 772, 1033, 1051
HpyF10VI	GCNNNNNNNGC	2 cut(s)	827, 1028
HpyF3I	CTNAG	3 cut(s)	281, 340, 897
HpySE526I	ACGT	4 cut(s)	475, 772, 1033, 1051
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	5 cut(s)	109, 202, 388, 550, 1183
LmnI	GCTCC	1 cut(s)	950
LpnPI	CCDG	9 cut(s)	168, 421, 428, 561, 739, 852, 866, 954, 1097
Lsp1109I	GCAGC	3 cut(s)	922, 1009, 1135
LweI	GCATC	4 cut(s)	282, 657, 839, 847
MaeI	CTAG	4 cut(s)	399, 423, 516, 842
MaeII	ACGT	4 cut(s)	475, 772, 1033, 1051
MaeIII	GTNAC	2 cut(s)	713, 1156
MalI	GATC	5 cut(s)	111, 204, 390, 552, 1185
MboI	GATC	5 cut(s)	109, 202, 388, 550, 1183
MboII	GAAGA	4 cut(s)	56, 182, 857, 1085
MfeI	CAATTG	1 cut(s)	297
MflI	RGATCY	2 cut(s)	550, 1183
MhlI	GDGCHC	1 cut(s)	457
MluCI	AATT	8 cut(s)	134, 192, 297, 495, 571, 577, 649, 935
MlyI	GAGTC	2 cut(s)	721, 987
MmeI	TCCRAC	2 cut(s)	666, 687
Mph1103I	ATGCAT	2 cut(s)	364, 672
MroXI	GAANNNNTTC	1 cut(s)	693
MseI	TTAA	8 cut(s)	138, 191, 494, 498, 576, 804, 1167, 1228
MspI	CCGG	2 cut(s)	155, 853
MunI	CAATTG	1 cut(s)	297
Mva1269I	GAATGC	1 cut(s)	285
MwoI	GCNNNNNNNGC	2 cut(s)	827, 1028
NdeI	CATATG	2 cut(s)	960, 1065
NdeII	GATC	5 cut(s)	109, 202, 388, 550, 1183
NlaIV	GGNNCC	1 cut(s)	454
NmuCI	GTSAC	1 cut(s)	713
NsiI	ATGCAT	2 cut(s)	364, 672
NspI	RCATGY	3 cut(s)	616, 704, 825
NspV	TTCGAA	1 cut(s)	404
PacI	TTAATTAA	1 cut(s)	498
PaqCI	CACCTGC	1 cut(s)	433
PceI	AGGCCT	2 cut(s)	165, 895
PctI	GAATGC	1 cut(s)	285
PdmI	GAANNNNTTC	1 cut(s)	693
PfeI	GAWTC	1 cut(s)	694
PkrI	GCNGC	4 cut(s)	820, 912, 1024, 1150
PleI	GAGTC	2 cut(s)	720, 986
PpsI	GAGTC	2 cut(s)	720, 986
Ppu21I	YACGTR	1 cut(s)	476
PshBI	ATTAAT	1 cut(s)	494
PspN4I	GGNNCC	1 cut(s)	454
PspPI	GGNCC	2 cut(s)	618, 641
PsuI	RGATCY	2 cut(s)	550, 1183
RsaI	GTAC	3 cut(s)	474, 478, 1050
RsaNI	GTAC	3 cut(s)	473, 477, 1049
SaqAI	TTAA	8 cut(s)	138, 191, 494, 498, 576, 804, 1167, 1228
SatI	GCNGC	4 cut(s)	819, 911, 1023, 1149
Sau3AI	GATC	5 cut(s)	109, 202, 388, 550, 1183
Sau96I	GGNCC	2 cut(s)	618, 641
SchI	GAGTC	2 cut(s)	721, 987
SduI	GDGCHC	1 cut(s)	457
SfaNI	GCATC	4 cut(s)	282, 657, 839, 847
SfuI	TTCGAA	1 cut(s)	404
SinI	GGWCC	1 cut(s)	641
SnaBI	TACGTA	1 cut(s)	476
Sse9I	AATT	8 cut(s)	134, 192, 297, 495, 571, 577, 649, 935
SseBI	AGGCCT	2 cut(s)	165, 895
SsiI	CCGC	2 cut(s)	818, 1161
SspMI	CTAG	4 cut(s)	399, 423, 516, 842
StuI	AGGCCT	2 cut(s)	165, 895
StyI	CCWWGG	4 cut(s)	113, 468, 621, 890
TaaI	ACNGT	1 cut(s)	1217
TaiI	ACGT	4 cut(s)	478, 775, 1036, 1054
TaqI	TCGA	2 cut(s)	404, 833
TasI	AATT	8 cut(s)	134, 192, 297, 495, 571, 577, 649, 935
TauI	GCSGC	1 cut(s)	821
TfiI	GAWTC	1 cut(s)	694
Tru1I	TTAA	8 cut(s)	138, 191, 494, 498, 576, 804, 1167, 1228
Tru9I	TTAA	8 cut(s)	138, 191, 494, 498, 576, 804, 1167, 1228
TseFI	GTSAC	1 cut(s)	713
TseI	GCWGC	3 cut(s)	910, 1022, 1148
Tsp45I	GTSAC	1 cut(s)	713
TspDTI	ATGAA	4 cut(s)	225, 364, 730, 1017
TspGWI	ACGGA	2 cut(s)	272, 782
VpaK11BI	GGWCC	1 cut(s)	641
VspI	ATTAAT	1 cut(s)	494
XapI	RAATTY	1 cut(s)	649
XbaI	TCTAGA	1 cut(s)	841
XceI	RCATGY	3 cut(s)	616, 704, 825
XmnI	GAANNNNTTC	1 cut(s)	693
XspI	CTAG	4 cut(s)	399, 423, 516, 842
Zsp2I	ATGCAT	2 cut(s)	364, 672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.