Rh6DG142500

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Forward (+)
20570115 .. 20579888
9774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG142500.1

Sequence Viewer

Length: 171 bp
ATGGCAGAAGTGGTTGAAGAAAACAGAAGAACTGTTCCTGGGTTTGGGATTTCAGTGATTGAAGCTATGGACACTGCAGATGAAGTTATGGAAAACTCTATTCCTTCTCTCATTAAAGATTCCCTCGAGTCTACTCAGAAAGGCAAGACAGTCCTTCTGAAGCATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

56

Amino Acids

6.17

Weight (kDa)

4.68

Isoelectric Point (pI)

36.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 131
AfiI CCNNNNNNNGG 1 cut(s) 44
AgsI TTSAA 2 cut(s) 17, 62
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 1 cut(s) 65
AluI AGCT 1 cut(s) 65
Ama87I CYCGRG 1 cut(s) 125
AvaI CYCGRG 1 cut(s) 125
BciT130I CCWGG 1 cut(s) 39
BfmI CTRYAG 1 cut(s) 75
Bme1390I CCNGG 1 cut(s) 39
BmeT110I CYCGRG 1 cut(s) 125
BmrFI CCNGG 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 38
Bsc4I CCNNNNNNNGG 1 cut(s) 44
BseBI CCWGG 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 38
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMII CTCAG 1 cut(s) 149
BsiHKCI CYCGRG 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 44
BsoBI CYCGRG 1 cut(s) 125
BspCNI CTCAG 1 cut(s) 148
BspMAI CTGCAG 1 cut(s) 79
BssECI CCNNGG 1 cut(s) 38
Bst2UI CCWGG 1 cut(s) 39
Bst4CI ACNGT 2 cut(s) 34, 151
BstDEI CTNAG 1 cut(s) 135
BstNI CCWGG 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 37
BstSFI CTRYAG 1 cut(s) 75
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 2 cut(s) 60, 72
CviAII CATG 1 cut(s) 164
CviJI RGCY 1 cut(s) 65
CviKI_1 RGCY 1 cut(s) 65
DdeI CTNAG 1 cut(s) 135
Eco88I CYCGRG 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 37
FaeI CATG 1 cut(s) 167
FaiI YATR 3 cut(s) 68, 89, 165
FatI CATG 1 cut(s) 163
FblI GTMKAC 1 cut(s) 131
Hin1II CATG 1 cut(s) 167
HinfI GANTC 2 cut(s) 119, 128
Hpy166II GTNNAC 1 cut(s) 132
Hpy188I TCNGA 2 cut(s) 138, 159
Hpy8I GTNNAC 1 cut(s) 132
HpyAV CCTTC 2 cut(s) 114, 164
HpyCH4III ACNGT 2 cut(s) 34, 151
HpyCH4V TGCA 1 cut(s) 77
HpyF3I CTNAG 1 cut(s) 135
Hsp92II CATG 1 cut(s) 167
LpnPI CCDG 2 cut(s) 24, 51
MboII GAAGA 2 cut(s) 29, 39
MlyI GAGTC 1 cut(s) 137
MnlI CCTC 1 cut(s) 134
MseI TTAA 1 cut(s) 114
MspR9I CCNGG 1 cut(s) 39
MvaI CCWGG 1 cut(s) 39
NlaIII CATG 1 cut(s) 167
PaeR7I CTCGAG 1 cut(s) 125
PfeI GAWTC 1 cut(s) 119
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
PspXI VCTCGAGB 1 cut(s) 125
PstI CTGCAG 1 cut(s) 79
SaqAI TTAA 1 cut(s) 114
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 39
SetI ASST 1 cut(s) 67
SfcI CTRYAG 1 cut(s) 75
Sfr274I CTCGAG 1 cut(s) 125
SgeI CNNG 5 cut(s) 50, 51, 137, 139, 157
SlaI CTCGAG 1 cut(s) 125
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
StyD4I CCNGG 1 cut(s) 37
TaaI ACNGT 2 cut(s) 34, 151
TaqI TCGA 1 cut(s) 126
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 2 cut(s) 60, 79
TspDTI ATGAA 1 cut(s) 96
TspRI CASTG 2 cut(s) 60, 79
XhoI CTCGAG 1 cut(s) 125
XmiI GTMKAC 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.