Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0007791

Physical Location & Seq

Genomic Coordinates Forward (+)

20580440 .. 20581156

Gene Structure 717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG142600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGACACTGGAGATGAAGTTATGGAAAACACTATTCCTTCTCTCATTAAAGATTCCCTTGAGTCTACTCAGAAAGGCAAGGTAGGTTCTCCAGAAGACATTGCTTGGGTTGATTCCTGCCTGATTAAGGAATCTGATATTTCAGATGATAACTGGAATTCTCTGAAAGCTGCACTAGTAGAAATCCTCGATTCTCATCCTGAATCACTCGGCTCTTCTTCAGGGATAAGTAATGAATTACATGGGGAAACAGACATTGAGATTCATCCTTCTAGTGAGGAGACAGAACCAAATCGCTTCTCTATTAGGGAAGAATTGGAGACATTAGATGATGATGTTCAAACCAATGACGATATTCCAATTAGCAGGAAGGCCTATGATTTGCAGTCATTTACTTTTGAGGGAAATCCCTTCTTGCCTGGTTACAAGGATGAGTTGGGAGTGACTGAAAACTTTGAGTTAGCAGGCAATAAGGATTCTTGGGCACCTGAGATCGAGCCTTCAACTGAGGATATATTCAGGGTTTGGAATTTGGAAGTTCCAGAAGAAGAAGATGAACTTGTTAAGCAGTTGAACAACGCCCTTGAAGAAGTATTGCCTCAATCCTCACCATCAAGTTTTGCTGATTCCGATGCACATAAAAATTTGGAAGAAACTTCAGTTGATGATCTGATTGCTGGGATTGCCGACCTTTCTTTGAATCAAATTTTCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

238

Amino Acids

26.39

Weight (kDa)

4.05

Isoelectric Point (pI)

58.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38980
fragaria_vesca	FvH4_2g10380
malus_domestica	MD00G1040100.v1.1 MD10G1063700.v1.1
prunus_persica	Prupe.8G085200_v2.0.a1 Prupe.8G085200_v2.0.a1 Prupe.8G085200_v2.0.a1 Prupe.8G085200_v2.0.a1
pyrus_communis	pycom05g04670
rosa_chinensis	RchiOBHm_Chr6g0267851
rosa_laevigata	RLG00000013977
rosa_multiflora	Rmu_sc0005400.1_g000020
rosa_roxburghii	Rroxscaffold_7G00200440 Rroxscaffold_7G00200450
rosa_rugosa	Rorug06G0034400 Rorug06G0034500
rosa_samantha	Rh6AG156300 Rh6AG156400 Rh6BG157400 Rh6CG158600 Rh6DG142500 Rh6DG142600
rosa_wichuraiana	Rw6G013430 Rw6G013570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	484
AccI	GTMKAC	1 cut(s)	65
AcsI	RAATTY	4 cut(s)	157, 529, 643, 705
AcuI	CTGAAG	2 cut(s)	204, 642
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	5 cut(s)	341, 504, 574, 587, 700
AhlI	ACTAGT	1 cut(s)	175
AjnI	CCWGG	1 cut(s)	418
AluBI	AGCT	1 cut(s)	170
AluI	AGCT	1 cut(s)	170
Alw26I	GTCTC	2 cut(s)	275, 314
AoxI	GGCC	1 cut(s)	372
ApeKI	GCWGC	1 cut(s)	170
ApoI	RAATTY	4 cut(s)	157, 529, 643, 705
AsuHPI	GGTGA	1 cut(s)	600
BaeGI	GKGCMC	1 cut(s)	487
BanI	GGYRCC	1 cut(s)	484
BbsI	GAAGAC	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	1 cut(s)	619
BciT130I	CCWGG	1 cut(s)	420
BcoDI	GTCTC	2 cut(s)	275, 314
BcuI	ACTAGT	1 cut(s)	175
BfaI	CTAG	2 cut(s)	176, 273
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
Bme1390I	CCNGG	1 cut(s)	420
BmiI	GGNNCC	1 cut(s)	486
BmrFI	CCNGG	1 cut(s)	420
BmsI	GCATC	1 cut(s)	622
BpiI	GAAGAC	1 cut(s)	102
BpmI	CTGGAG	2 cut(s)	30, 75
BpuEI	CTTGAG	1 cut(s)	80
BsaBI	GATNNNNATC	1 cut(s)	195
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse1I	ACTGG	2 cut(s)	13, 158
Bse3DI	GCAATG	1 cut(s)	99
Bse8I	GATNNNNATC	1 cut(s)	195
BseBI	CCWGG	1 cut(s)	420
BseGI	GGATG	3 cut(s)	196, 265, 436
BseJI	GATNNNNATC	1 cut(s)	195
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	3 cut(s)	83, 480, 498
BseNI	ACTGG	2 cut(s)	13, 158
BseRI	GAGGAG	1 cut(s)	293
BseSI	GKGCMC	1 cut(s)	487
BseXI	GCAGC	1 cut(s)	157
BseYI	CCCAGC	1 cut(s)	677
BsgI	GTGCAG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	374
BshNI	GGYRCC	1 cut(s)	484
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	2 cut(s)	275, 314
BsnI	GGCC	1 cut(s)	374
Bsp1286I	GDGCHC	1 cut(s)	487
Bsp143I	GATC	2 cut(s)	492, 667
BspANI	GGCC	1 cut(s)	374
BspCNI	CTCAG	3 cut(s)	82, 481, 499
BspLI	GGNNCC	1 cut(s)	486
BspQI	GCTCTTC	1 cut(s)	220
BspT107I	GGYRCC	1 cut(s)	484
BsrDI	GCAATG	1 cut(s)	99
BsrI	ACTGG	2 cut(s)	13, 158
BssMI	GATC	2 cut(s)	492, 667
Bst2UI	CCWGG	1 cut(s)	420
Bst6I	CTCTTC	1 cut(s)	220
BstC8I	GCNNGC	1 cut(s)	466
BstDEI	CTNAG	3 cut(s)	69, 489, 507
BstENI	CCTNNNNNAGG	1 cut(s)	125
BstF5I	GGATG	3 cut(s)	196, 265, 436
BstKTI	GATC	2 cut(s)	495, 670
BstMAI	GTCTC	2 cut(s)	275, 314
BstMBI	GATC	2 cut(s)	492, 667
BstMWI	GCNNNNNNNGC	1 cut(s)	683
BstNI	CCWGG	1 cut(s)	420
BstSCI	CCNGG	1 cut(s)	418
BstSLI	GKGCMC	1 cut(s)	487
BstV1I	GCAGC	1 cut(s)	157
BstV2I	GAAGAC	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	374
BtsCI	GGATG	3 cut(s)	196, 265, 436
BtsIMutI	CAGTG	1 cut(s)	6
Cac8I	GCNNGC	1 cut(s)	466
CviAII	CATG	1 cut(s)	242
CviJI	RGCY	4 cut(s)	170, 213, 374, 499
CviKI_1	RGCY	4 cut(s)	170, 213, 374, 499
DdeI	CTNAG	3 cut(s)	69, 489, 507
DpnI	GATC	2 cut(s)	494, 669
DpnII	GATC	2 cut(s)	492, 667
Eam1104I	CTCTTC	1 cut(s)	220
EarI	CTCTTC	1 cut(s)	220
Eco147I	AGGCCT	1 cut(s)	374
Eco57I	CTGAAG	2 cut(s)	204, 642
EcoNI	CCTNNNNNAGG	1 cut(s)	125
EcoRI	GAATTC	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	418
FaeI	CATG	1 cut(s)	245
FaiI	YATR	5 cut(s)	23, 243, 378, 515, 639
FalI	AAGNNNNNCTT	4 cut(s)	42, 74, 543, 575
FatI	CATG	1 cut(s)	241
FblI	GTMKAC	1 cut(s)	65
Fnu4HI	GCNGC	1 cut(s)	171
FokI	GGATG	3 cut(s)	183, 252, 443
Fsp4HI	GCNGC	1 cut(s)	171
FspBI	CTAG	2 cut(s)	176, 273
GluI	GCNGC	1 cut(s)	171
GsaI	CCCAGC	1 cut(s)	681
GsuI	CTGGAG	2 cut(s)	30, 75
HaeIII	GGCC	1 cut(s)	374
Hin1II	CATG	1 cut(s)	245
HphI	GGTGA	1 cut(s)	600
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188I	TCNGA	6 cut(s)	72, 136, 145, 165, 631, 672
Hpy188III	TCNNGA	3 cut(s)	92, 200, 542
Hpy8I	GTNNAC	1 cut(s)	66
HpyAV	CCTTC	5 cut(s)	48, 279, 364, 421, 510
HpyCH4V	TGCA	3 cut(s)	173, 385, 635
HpyF10VI	GCNNNNNNNGC	1 cut(s)	683
HpyF3I	CTNAG	3 cut(s)	69, 489, 507
Hsp92II	CATG	1 cut(s)	245
Kzo9I	GATC	2 cut(s)	492, 667
LguI	GCTCTTC	1 cut(s)	220
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	1 cut(s)	622
MaeI	CTAG	2 cut(s)	176, 273
MaeIII	GTNAC	2 cut(s)	422, 442
MalI	GATC	2 cut(s)	494, 669
MboI	GATC	2 cut(s)	492, 667
MboII	GAAGA	9 cut(s)	107, 207, 210, 323, 557, 560, 563, 599, 662
MhlI	GDGCHC	1 cut(s)	487
MluCI	AATT	7 cut(s)	157, 236, 314, 360, 529, 643, 705
MlyI	GAGTC	1 cut(s)	71
MnlI	CCTC	6 cut(s)	197, 271, 394, 502, 609, 616
MseI	TTAA	3 cut(s)	48, 126, 564
MspR9I	CCNGG	1 cut(s)	420
MvaI	CCWGG	1 cut(s)	420
MwoI	GCNNNNNNNGC	1 cut(s)	683
NdeII	GATC	2 cut(s)	492, 667
NlaIII	CATG	1 cut(s)	245
NlaIV	GGNNCC	1 cut(s)	486
NmeAIII	GCCGAG	1 cut(s)	189
NmuCI	GTSAC	1 cut(s)	442
PceI	AGGCCT	1 cut(s)	374
PciSI	GCTCTTC	1 cut(s)	220
PfeI	GAWTC	9 cut(s)	53, 113, 131, 191, 203, 262, 476, 626, 700
PkrI	GCNGC	1 cut(s)	172
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	418
PspFI	CCCAGC	1 cut(s)	677
PspGI	CCWGG	1 cut(s)	418
PspN4I	GGNNCC	1 cut(s)	486
SapI	GCTCTTC	1 cut(s)	220
SaqAI	TTAA	3 cut(s)	48, 126, 564
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	2 cut(s)	492, 667
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	420
SduI	GDGCHC	1 cut(s)	487
SetI	ASST	5 cut(s)	84, 88, 172, 490, 693
SfaNI	GCATC	1 cut(s)	622
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
SpeI	ACTAGT	1 cut(s)	175
Sse9I	AATT	7 cut(s)	157, 236, 314, 360, 529, 643, 705
SseBI	AGGCCT	1 cut(s)	374
SspMI	CTAG	2 cut(s)	176, 273
StuI	AGGCCT	1 cut(s)	374
StyD4I	CCNGG	1 cut(s)	418
TaqI	TCGA	2 cut(s)	189, 495
TasI	AATT	7 cut(s)	157, 236, 314, 360, 529, 643, 705
TfiI	GAWTC	9 cut(s)	53, 113, 131, 191, 203, 262, 476, 626, 700
Tru1I	TTAA	3 cut(s)	48, 126, 564
Tru9I	TTAA	3 cut(s)	48, 126, 564
TscAI	CASTG	1 cut(s)	13
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	1 cut(s)	170
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	4 cut(s)	30, 249, 254, 570
TspRI	CASTG	1 cut(s)	13
XagI	CCTNNNNNAGG	1 cut(s)	125
XapI	RAATTY	4 cut(s)	157, 529, 643, 705
XmiI	GTMKAC	1 cut(s)	65
XspI	CTAG	2 cut(s)	176, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.