Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010954

Physical Location & Seq

Genomic Coordinates Reverse (-)

18225297 .. 18227988

Gene Structure 2692 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G39120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGTTAGCTCAGTCGCACTTCTTCTCTAAGTCCTTCGATCTGATTCCGCCACAGTCTCCGGCGTTGCGGTCTGCAAATCCTTCTCTTCGTATCTCTTCTTCTTATAGTAACAGCCGCTTATCCTTTCTTTCTTCTTCTGCAATTGCTGTTCCCGTCTCCCGCCGTCGGTTTTGCCTGACTATGGCTTCAAACTCAAAACGGCCTAACATAAGCAACGAGTCTCCTTCGGAACTTAGCGACACTGAGCTGGATCGATTCGCCGCTGTGGGAAATGCATTAGCTGACGCTTCCGGCGAGGTTATCAGAAAGTATTTCCGGAAGAAATTCGACATTGTTGATAAAGATGATATGAGCCCTGTTACAATCGCTGATCAAATGGCTGAAGAGGCAATGGTTTCCATTATATTCCAGAATCTCCCTTCTCATGCTATATATGGTGAGGAGAAGGGTTGGAGATGCAAAGAGGAATCTGCAGACTATGTTTGGGTTTTGGACCCAATCGACGGAACAAAGAGCTTTATTACAGGGAAACCCGTGTTTGGTACGCTGATTGCTCTGCTCTACAAAGGTAAACCGATTCTAGGACTGATTGATCAGCCTATTCTAAAAGAGAGATGGATAGGAATGAATGGAAGAAGAACTAAACTAAACGGGGAGGATATCTCAACGCGATCTTGCCCCAAATTATCACAAGCATATTTATACACCACTAGCCCACATCTTTTCAGTGAAGAGGCAGAAAAGGCATATTCTCGAGTTAGAGACAAGGTGAAAGTGCCCTTATACGGCTGTGATTGTTATGCTTACGCTCTCCTGGCTTCTGGATTTGTCGATCTTGTTATTGAATCCGGTCTAAAGCCATATGATTTCCTTGCTCTGGTGCCTGTAATAGAAGGCGCTGGAGGTACCATAACCGATTGGACTGGTAAACGATTTCTGTGGGAAGCTTCATCCAGTGCAGTTGCGACAAGCTTTAATGTAGTTGCAGCAGGAGATTCAGACATTCATCAGCAGGCTTTGGAGTCACTTGAGTGGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004401 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0052745 GO:0052803 GO:0052834 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00053 ko00340 ko00562 ko01100 ko01110 ko01230 ko04070 map00053 map00340 map00562 map01100 map01110 map01230 map04070

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

346

Amino Acids

38.24

Weight (kDa)

6.03

Isoelectric Point (pI)

55.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inositol_P	PF00459	83 - 323	6.4e-65	Inositol monophosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39120 AT4G39120
fragaria_vesca	FvH4_2g09630 FvH4_2g09630 FvH4_2g09630 FvH4_2g09630
malus_domestica	MD05G1061200.v1.1 MD10G1068900.v1.1
prunus_persica	Prupe.8G090900_v2.0.a1
pyrus_communis	pycom05g05220 pycom10g05500
rosa_chinensis	RchiOBHm_Chr6g0265981
rosa_laevigata	RLG00000014141
rosa_multiflora	Rmu_sc0030533.1_g000003
rosa_roxburghii	Rroxscaffold_7G00202170
rosa_rugosa	Rorug06G0022100
rosa_samantha	Rh6AG143300 Rh6BG143600 Rh6CG140300
rosa_wichuraiana	Rw6G012390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	905
AccB1I	GGYRCC	2 cut(s)	880, 905
AccII	CGCG	1 cut(s)	670
AccIII	TCCGGA	1 cut(s)	315
AciI	CCGC	5 cut(s)	47, 67, 115, 160, 261
AclWI	GGATC	1 cut(s)	258
AcsI	RAATTY	1 cut(s)	323
AcuI	CTGAAG	1 cut(s)	402
AfaI	GTAC	2 cut(s)	544, 907
AfiI	CCNNNNNNNGG	7 cut(s)	165, 181, 503, 539, 581, 785, 877
AgsI	TTSAA	2 cut(s)	189, 845
AjnI	CCWGG	1 cut(s)	813
AleI	CACNNNNGTG	1 cut(s)	1030
AluBI	AGCT	6 cut(s)	8, 247, 281, 516, 947, 972
AluI	AGCT	6 cut(s)	8, 247, 281, 516, 947, 972
Alw26I	GTCTC	4 cut(s)	60, 160, 225, 756
AlwI	GGATC	1 cut(s)	258
Ama87I	CYCGRG	1 cut(s)	753
Aor13HI	TCCGGA	1 cut(s)	315
AoxI	GGCC	1 cut(s)	200
ApeKI	GCWGC	1 cut(s)	986
ApoI	RAATTY	1 cut(s)	323
Asp700I	GAANNNNTTC	1 cut(s)	323
Asp718I	GGTACC	1 cut(s)	905
AspLEI	GCGC	1 cut(s)	899
AspS9I	GGNCC	1 cut(s)	493
AsuHPI	GGTGA	2 cut(s)	449, 781
AvaI	CYCGRG	1 cut(s)	753
AvaII	GGWCC	1 cut(s)	493
BaeGI	GKGCMC	1 cut(s)	780
BanI	GGYRCC	2 cut(s)	880, 905
BanII	GRGCYC	1 cut(s)	356
BarI	GAAGNNNNNNTAC	2 cut(s)	82, 114
BbvI	GCAGC	1 cut(s)	998
BccI	CCATC	1 cut(s)	609
BceAI	ACGGC	3 cut(s)	147, 215, 802
BciT130I	CCWGG	1 cut(s)	815
BclI	TGATCA	2 cut(s)	370, 592
BcoDI	GTCTC	4 cut(s)	60, 160, 225, 756
BfaI	CTAG	2 cut(s)	581, 711
BfmI	CTRYAG	1 cut(s)	471
BfoI	RGCGCY	1 cut(s)	900
BisI	GCNGC	3 cut(s)	115, 261, 987
BlsI	GCNGC	3 cut(s)	116, 262, 988
Bme1390I	CCNGG	1 cut(s)	815
Bme18I	GGWCC	1 cut(s)	493
BmeT110I	CYCGRG	1 cut(s)	753
BmgT120I	GGNCC	1 cut(s)	493
BmiI	GGNNCC	3 cut(s)	495, 882, 907
BmrFI	CCNGG	1 cut(s)	815
BmsI	GCATC	1 cut(s)	446
BplI	GAGNNNNNCTC	2 cut(s)	647, 679
BpmI	CTGGAG	1 cut(s)	921
Bsa29I	ATCGAT	1 cut(s)	253
BsaWI	WCCGGW	2 cut(s)	315, 848
Bsc4I	CCNNNNNNNGG	7 cut(s)	165, 181, 503, 539, 581, 785, 877
Bse1I	ACTGG	2 cut(s)	928, 954
Bse3DI	GCAATG	1 cut(s)	396
BseAI	TCCGGA	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	815
BseCI	ATCGAT	1 cut(s)	253
BseGI	GGATG	1 cut(s)	950
BseLI	CCNNNNNNNGG	7 cut(s)	165, 181, 503, 539, 581, 785, 877
BseMI	GCAATG	1 cut(s)	396
BseMII	CTCAG	2 cut(s)	23, 234
BseNI	ACTGG	2 cut(s)	928, 954
BseRI	GAGGAG	1 cut(s)	455
BseSI	GKGCMC	1 cut(s)	780
BseXI	GCAGC	1 cut(s)	998
BsgI	GTGCAG	1 cut(s)	978
Bsh1236I	CGCG	1 cut(s)	670
BshFI	GGCC	1 cut(s)	202
BshNI	GGYRCC	2 cut(s)	880, 905
BshVI	ATCGAT	1 cut(s)	253
BsiHKCI	CYCGRG	1 cut(s)	753
BsiSI	CCGG	4 cut(s)	59, 291, 316, 849
BslI	CCNNNNNNNGG	7 cut(s)	165, 181, 503, 539, 581, 785, 877
BsmAI	GTCTC	4 cut(s)	60, 160, 225, 756
BsmBI	CGTCTC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	202
BsoBI	CYCGRG	1 cut(s)	753
Bsp1286I	GDGCHC	2 cut(s)	356, 780
Bsp13I	TCCGGA	1 cut(s)	315
Bsp143I	GATC	6 cut(s)	37, 250, 370, 592, 671, 832
BspACI	CCGC	5 cut(s)	47, 67, 115, 160, 261
BspANI	GGCC	1 cut(s)	202
BspCNI	CTCAG	2 cut(s)	22, 235
BspDI	ATCGAT	1 cut(s)	253
BspEI	TCCGGA	1 cut(s)	315
BspFNI	CGCG	1 cut(s)	670
BspLI	GGNNCC	3 cut(s)	495, 882, 907
BspMAI	CTGCAG	1 cut(s)	475
BspPI	GGATC	1 cut(s)	258
BspT107I	GGYRCC	2 cut(s)	880, 905
BsrDI	GCAATG	1 cut(s)	396
BsrI	ACTGG	2 cut(s)	928, 954
BssMI	GATC	6 cut(s)	37, 250, 370, 592, 671, 832
Bst2UI	CCWGG	1 cut(s)	815
Bst4CI	ACNGT	1 cut(s)	54
Bst6I	CTCTTC	4 cut(s)	90, 100, 378, 726
BstC8I	GCNNGC	1 cut(s)	1014
BstDEI	CTNAG	4 cut(s)	9, 27, 233, 243
BstF5I	GGATG	1 cut(s)	950
BstFNI	CGCG	1 cut(s)	670
BstH2I	RGCGCY	1 cut(s)	900
BstHHI	GCGC	1 cut(s)	899
BstKTI	GATC	6 cut(s)	40, 253, 373, 595, 674, 835
BstMAI	GTCTC	4 cut(s)	60, 160, 225, 756
BstMBI	GATC	6 cut(s)	37, 250, 370, 592, 671, 832
BstMWI	GCNNNNNNNGC	3 cut(s)	386, 743, 815
BstNI	CCWGG	1 cut(s)	815
BstSCI	CCNGG	1 cut(s)	813
BstSFI	CTRYAG	1 cut(s)	471
BstSLI	GKGCMC	1 cut(s)	780
BstUI	CGCG	1 cut(s)	670
BstV1I	GCAGC	1 cut(s)	998
Bsu15I	ATCGAT	1 cut(s)	253
BsuRI	GGCC	1 cut(s)	202
BsuTUI	ATCGAT	1 cut(s)	253
BtsCI	GGATG	1 cut(s)	950
BtsIMutI	CAGTG	3 cut(s)	240, 733, 961
Cac8I	GCNNGC	1 cut(s)	1014
CfoI	GCGC	1 cut(s)	899
Cfr13I	GGNCC	1 cut(s)	493
ClaI	ATCGAT	1 cut(s)	253
CseI	GACGC	1 cut(s)	293
Csp6I	GTAC	2 cut(s)	543, 906
CviAII	CATG	1 cut(s)	425
CviQI	GTAC	2 cut(s)	543, 906
DdeI	CTNAG	4 cut(s)	9, 27, 233, 243
DpnI	GATC	6 cut(s)	39, 252, 372, 594, 673, 834
DpnII	GATC	6 cut(s)	37, 250, 370, 592, 671, 832
Eam1104I	CTCTTC	4 cut(s)	90, 100, 378, 726
EarI	CTCTTC	4 cut(s)	90, 100, 378, 726
EciI	GGCGGA	1 cut(s)	36
Eco24I	GRGCYC	1 cut(s)	356
Eco32I	GATATC	1 cut(s)	661
Eco47I	GGWCC	1 cut(s)	493
Eco57I	CTGAAG	1 cut(s)	402
Eco88I	CYCGRG	1 cut(s)	753
EcoRII	CCWGG	1 cut(s)	813
EcoRV	GATATC	1 cut(s)	661
EcoT22I	ATGCAT	1 cut(s)	277
EcoT38I	GRGCYC	1 cut(s)	356
Esp3I	CGTCTC	1 cut(s)	160
FaeI	CATG	1 cut(s)	428
FatI	CATG	1 cut(s)	424
FauI	CCCGC	1 cut(s)	167
FauNDI	CATATG	1 cut(s)	862
FbaI	TGATCA	2 cut(s)	370, 592
Fnu4HI	GCNGC	3 cut(s)	115, 261, 987
FokI	GGATG	1 cut(s)	937
FriOI	GRGCYC	1 cut(s)	356
Fsp4HI	GCNGC	3 cut(s)	115, 261, 987
FspBI	CTAG	2 cut(s)	581, 711
GlaI	GCGC	1 cut(s)	898
GluI	GCNGC	3 cut(s)	115, 261, 987
GsuI	CTGGAG	1 cut(s)	921
HaeII	RGCGCY	1 cut(s)	900
HaeIII	GGCC	1 cut(s)	202
HapII	CCGG	4 cut(s)	59, 291, 316, 849
HgaI	GACGC	1 cut(s)	293
HhaI	GCGC	1 cut(s)	899
Hin1II	CATG	1 cut(s)	428
Hin6I	GCGC	1 cut(s)	897
HinP1I	GCGC	1 cut(s)	897
HindIII	AAGCTT	2 cut(s)	945, 970
HinfI	GANTC	9 cut(s)	43, 218, 255, 412, 467, 577, 845, 995, 1022
HpaII	CCGG	4 cut(s)	59, 291, 316, 849
HphI	GGTGA	2 cut(s)	449, 781
Hpy166II	GTNNAC	2 cut(s)	572, 929
Hpy188I	TCNGA	4 cut(s)	42, 229, 305, 1000
Hpy188III	TCNNGA	4 cut(s)	316, 409, 753, 822
Hpy8I	GTNNAC	2 cut(s)	572, 929
Hpy99I	CGWCG	2 cut(s)	168, 506
HpyAV	CCTTC	6 cut(s)	43, 90, 234, 429, 439, 887
HpyCH4III	ACNGT	1 cut(s)	54
HpyCH4V	TGCA	7 cut(s)	74, 140, 275, 459, 473, 959, 986
HpyF10VI	GCNNNNNNNGC	3 cut(s)	386, 743, 815
HpyF3I	CTNAG	4 cut(s)	9, 27, 233, 243
Hsp92II	CATG	1 cut(s)	428
HspAI	GCGC	1 cut(s)	897
Kpn2I	TCCGGA	1 cut(s)	315
KpnI	GGTACC	1 cut(s)	909
Ksp22I	TGATCA	2 cut(s)	370, 592
Kzo9I	GATC	6 cut(s)	37, 250, 370, 592, 671, 832
Lsp1109I	GCAGC	1 cut(s)	998
LweI	GCATC	1 cut(s)	446
MaeI	CTAG	2 cut(s)	581, 711
MaeIII	GTNAC	3 cut(s)	107, 358, 1023
MalI	GATC	6 cut(s)	39, 252, 372, 594, 673, 834
MboI	GATC	6 cut(s)	37, 250, 370, 592, 671, 832
MfeI	CAATTG	1 cut(s)	141
MhlI	GDGCHC	2 cut(s)	356, 780
MluCI	AATT	3 cut(s)	141, 323, 683
MlyI	GAGTC	2 cut(s)	227, 1031
MmeI	TCCRAC	1 cut(s)	431
MnlI	CCTC	7 cut(s)	289, 379, 433, 457, 649, 727, 896
Mph1103I	ATGCAT	1 cut(s)	277
MroI	TCCGGA	1 cut(s)	315
MroXI	GAANNNNTTC	1 cut(s)	323
MseI	TTAA	1 cut(s)	975
MslI	CAYNNNNRTG	1 cut(s)	1030
MspA1I	CMGCKG	1 cut(s)	263
MspI	CCGG	4 cut(s)	59, 291, 316, 849
MspR9I	CCNGG	1 cut(s)	815
MunI	CAATTG	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	815
MvnI	CGCG	1 cut(s)	670
MwoI	GCNNNNNNNGC	3 cut(s)	386, 743, 815
NdeI	CATATG	1 cut(s)	862
NdeII	GATC	6 cut(s)	37, 250, 370, 592, 671, 832
NlaIII	CATG	1 cut(s)	428
NlaIV	GGNNCC	3 cut(s)	495, 882, 907
NmuCI	GTSAC	1 cut(s)	1023
NsiI	ATGCAT	1 cut(s)	277
OliI	CACNNNNGTG	1 cut(s)	1030
PaeR7I	CTCGAG	1 cut(s)	753
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PdmI	GAANNNNTTC	1 cut(s)	323
PfeI	GAWTC	7 cut(s)	43, 255, 412, 467, 577, 845, 995
PkrI	GCNGC	3 cut(s)	116, 262, 988
PleI	GAGTC	2 cut(s)	226, 1030
PpsI	GAGTC	2 cut(s)	226, 1030
Psp6I	CCWGG	1 cut(s)	813
PspGI	CCWGG	1 cut(s)	813
PspN4I	GGNNCC	3 cut(s)	495, 882, 907
PspPI	GGNCC	1 cut(s)	493
PstI	CTGCAG	1 cut(s)	475
RsaI	GTAC	2 cut(s)	544, 907
RsaNI	GTAC	2 cut(s)	543, 906
RseI	CAYNNNNRTG	1 cut(s)	1030
SaqAI	TTAA	1 cut(s)	975
SatI	GCNGC	3 cut(s)	115, 261, 987
Sau3AI	GATC	6 cut(s)	37, 250, 370, 592, 671, 832
Sau96I	GGNCC	1 cut(s)	493
SchI	GAGTC	2 cut(s)	227, 1031
ScrFI	CCNGG	1 cut(s)	815
SduI	GDGCHC	2 cut(s)	356, 780
SfaNI	GCATC	1 cut(s)	446
SfcI	CTRYAG	1 cut(s)	471
Sfr274I	CTCGAG	1 cut(s)	753
SinI	GGWCC	1 cut(s)	493
SlaI	CTCGAG	1 cut(s)	753
SmiMI	CAYNNNNRTG	1 cut(s)	1030
SmlI	CTYRAG	2 cut(s)	753, 1028
SmoI	CTYRAG	2 cut(s)	753, 1028
Sse9I	AATT	3 cut(s)	141, 323, 683
SsiI	CCGC	5 cut(s)	47, 67, 115, 160, 261
SspMI	CTAG	2 cut(s)	581, 711
StyD4I	CCNGG	1 cut(s)	813
TaaI	ACNGT	1 cut(s)	54
TaqI	TCGA	6 cut(s)	36, 253, 327, 501, 754, 831
TasI	AATT	3 cut(s)	141, 323, 683
TauI	GCSGC	2 cut(s)	117, 263
TfiI	GAWTC	7 cut(s)	43, 255, 412, 467, 577, 845, 995
Tru1I	TTAA	1 cut(s)	975
Tru9I	TTAA	1 cut(s)	975
TscAI	CASTG	3 cut(s)	247, 733, 961
TseFI	GTSAC	1 cut(s)	1023
TseI	GCWGC	1 cut(s)	986
Tsp45I	GTSAC	1 cut(s)	1023
TspDTI	ATGAA	3 cut(s)	641, 939, 995
TspGWI	ACGGA	1 cut(s)	519
TspRI	CASTG	3 cut(s)	247, 733, 961
VpaK11BI	GGWCC	1 cut(s)	493
XapI	RAATTY	1 cut(s)	323
XhoI	CTCGAG	1 cut(s)	753
XmnI	GAANNNNTTC	1 cut(s)	323
XspI	CTAG	2 cut(s)	581, 711
Zsp2I	ATGCAT	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.