Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0010954

Physical Location & Seq

Genomic Coordinates Reverse (-)

9454518 .. 9463890

Gene Structure 9373 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1068900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGCTCTCCCAGATTCCCAAACCCCTCTCCTTCTCCCAAACCCCTCCGATCCCCATTCCCATCCTCAACACTCTCACCATCCGTTTCTCCACTCCCAAGTACTCGCTCTCGCTCCTTAGCCTCCCTGTCTCCCGTCATCGACTCCCACTCGCAATGGCCTCCGGCCCCGACCTCCCAGACCCCGTCGTTTCGCTCCCGCCCAACGATTTCGAGCTCGACCGCTTCGCTGAGGTCGCCAACAAGGTTGCCGACGCCTCCGGGGAAGTTATTCGGAAATATTTCCGGCACAAGTTTGACATTCTCGATAAAGAGGATTCCAGCCCTGTGACAATTGCAGATCAAACAGCAGAGGGAGCAATGGCCTCAATTATATCAGAGAATCTTCCTTCTCATGCCATTTATGGAGAAGAGAATGGGTGGAGATGCAATGAGAAGTTTGCAGATTATGTTTGGGTTTTAGATCCAATAGACGGGACAAAGAGCTTTATCACTGGAAAACCTGTGTTTGGTACTCTCATTGCTCTGCTACATCGGGGCAAACCAATTCTTGGGATAATTGATCAGCCTGTTTTAAGAGAAAGATGGGTTGGGATTAGTGGAAGGAAAACTACATTGAATGGCCAAGTAGTGTCCACACGCGCTTGTGCAAATCTGGCACAGGCTTATTTGTACACTACAAGCCCACACCTATTCAGTGCAAAGGCAGAAGAAGCATTTATTCGTGTTAGAAATAAGGTAAAAGTGCCATTGTACGACTGTGACTGCTATGCTTATGCCCTGCTGGCTTCTGGTTTTGTGGATCTTGTTGTTGAGTCAGGTCTCAAGCCATACGATTTTCTTTCACTGATACCTGTGATAGAAGGTGCTGGCGGTGTCATAACAGATTGGAAGGGACATCGGCTTTATTGGGATGCTTCTCCAAATTCGAAGGCAACAAGTTTTGATGTAGTGGCAGCTGGAGATAAGCAGATTCACCAGCAAGCTCTAGATTCATTACAATGGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004401 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0052745 GO:0052803 GO:0052834 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00053 ko00340 ko00562 ko01100 ko01110 ko01230 ko04070 map00053 map00340 map00562 map01100 map01110 map01230 map04070

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

336

Amino Acids

36.92

Weight (kDa)

6.18

Isoelectric Point (pI)

37.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inositol_P	PF00459	72 - 325	6.4e-55	Inositol monophosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39120 AT4G39120
fragaria_vesca	FvH4_2g09630 FvH4_2g09630 FvH4_2g09630 FvH4_2g09630
malus_domestica	MD05G1061200.v1.1 MD10G1068900.v1.1
prunus_persica	Prupe.8G090900_v2.0.a1
pyrus_communis	pycom05g05220 pycom10g05500
rosa_chinensis	RchiOBHm_Chr6g0265981
rosa_laevigata	RLG00000014141
rosa_multiflora	Rmu_sc0030533.1_g000003
rosa_roxburghii	Rroxscaffold_7G00202170
rosa_rugosa	Rorug06G0022100
rosa_samantha	Rh6AG143300 Rh6BG143600 Rh6CG140300
rosa_wichuraiana	Rw6G012390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	548
AccII	CGCG	1 cut(s)	639
AciI	CCGC	3 cut(s)	197, 220, 870
AclWI	GGATC	3 cut(s)	43, 455, 807
AcoI	YGGCCR	1 cut(s)	619
AcsI	RAATTY	1 cut(s)	922
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	4 cut(s)	101, 511, 671, 752
AfiI	CCNNNNNNNGG	3 cut(s)	470, 506, 548
AgsI	TTSAA	1 cut(s)	616
AjuI	GAANNNNNNNTTGG	2 cut(s)	570, 602
AluBI	AGCT	4 cut(s)	214, 483, 956, 983
AluI	AGCT	4 cut(s)	214, 483, 956, 983
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	2 cut(s)	133, 824
AlwI	GGATC	3 cut(s)	43, 455, 807
AoxI	GGCC	4 cut(s)	156, 163, 360, 619
ApeKI	GCWGC	1 cut(s)	953
ApoI	RAATTY	1 cut(s)	922
Asp700I	GAANNNNTTC	2 cut(s)	267, 278
AspLEI	GCGC	1 cut(s)	641
AspS9I	GGNCC	1 cut(s)	164
AsuC2I	CCSGG	1 cut(s)	259
AsuHPI	GGTGA	2 cut(s)	67, 965
AsuII	TTCGAA	1 cut(s)	926
BalI	TGGCCA	1 cut(s)	621
BanII	GRGCYC	1 cut(s)	216
BarI	GAAGNNNNNNTAC	2 cut(s)	592, 624
Bbv12I	GWGCWC	1 cut(s)	216
BbvCI	CCTCAGC	1 cut(s)	228
BbvI	GCAGC	1 cut(s)	965
BccI	CCATC	3 cut(s)	68, 86, 576
BclI	TGATCA	1 cut(s)	559
BcnI	CCSGG	1 cut(s)	259
BcoDI	GTCTC	2 cut(s)	133, 824
BfaI	CTAG	1 cut(s)	986
BglI	GCCNNNNNGGC	1 cut(s)	782
BisI	GCNGC	1 cut(s)	954
BlsI	GCNGC	1 cut(s)	955
BmcAI	AGTACT	1 cut(s)	101
Bme1390I	CCNGG	1 cut(s)	259
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	1 cut(s)	259
BmsI	GCATC	2 cut(s)	413, 901
BpmI	CTGGAG	1 cut(s)	978
Bpu10I	CCTNAGC	2 cut(s)	116, 228
Bpu14I	TTCGAA	1 cut(s)	926
BpuEI	CTTGAG	1 cut(s)	806
BpuMI	CCSGG	1 cut(s)	259
BsaHI	GRCGYC	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	824
BsaJI	CCNNGG	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	3 cut(s)	470, 506, 548
Bse1I	ACTGG	1 cut(s)	496
Bse3DI	GCAATG	4 cut(s)	159, 363, 433, 516
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	3 cut(s)	60, 78, 916
BseLI	CCNNNNNNNGG	3 cut(s)	470, 506, 548
BseMI	GCAATG	4 cut(s)	159, 363, 433, 516
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	496
BseXI	GCAGC	1 cut(s)	965
Bsh1236I	CGCG	1 cut(s)	639
Bsh1285I	CGRYCG	1 cut(s)	220
BshFI	GGCC	4 cut(s)	158, 165, 362, 621
BsiEI	CGRYCG	1 cut(s)	220
BsiHKAI	GWGCWC	1 cut(s)	216
BsiSI	CCGG	3 cut(s)	162, 258, 283
BslFI	GGGAC	2 cut(s)	487, 906
BslI	CCNNNNNNNGG	3 cut(s)	470, 506, 548
BsmAI	GTCTC	2 cut(s)	133, 824
BsmFI	GGGAC	2 cut(s)	487, 906
BsnI	GGCC	4 cut(s)	158, 165, 362, 621
Bso31I	GGTCTC	1 cut(s)	824
Bsp119I	TTCGAA	1 cut(s)	926
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp1407I	TGTACA	1 cut(s)	669
Bsp143I	GATC	5 cut(s)	48, 337, 460, 559, 799
BspACI	CCGC	3 cut(s)	197, 220, 870
BspANI	GGCC	4 cut(s)	158, 165, 362, 621
BspCNI	CTCAG	1 cut(s)	220
BspFNI	CGCG	1 cut(s)	639
BspLI	GGNNCC	1 cut(s)	166
BspPI	GGATC	3 cut(s)	43, 455, 807
BspT104I	TTCGAA	1 cut(s)	926
BspTNI	GGTCTC	1 cut(s)	824
BsrDI	GCAATG	4 cut(s)	159, 363, 433, 516
BsrGI	TGTACA	1 cut(s)	669
BsrI	ACTGG	1 cut(s)	496
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	5 cut(s)	48, 337, 460, 559, 799
BssNI	GRCGYC	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	758
Bst6I	CTCTTC	1 cut(s)	402
BstACI	GRCGYC	1 cut(s)	252
BstAUI	TGTACA	1 cut(s)	669
BstBI	TTCGAA	1 cut(s)	926
BstC8I	GCNNGC	3 cut(s)	783, 868, 981
BstDEI	CTNAG	2 cut(s)	116, 228
BstF5I	GGATG	3 cut(s)	60, 78, 916
BstFNI	CGCG	1 cut(s)	639
BstHHI	GCGC	1 cut(s)	641
BstKTI	GATC	5 cut(s)	51, 340, 463, 562, 802
BstMAI	GTCTC	2 cut(s)	133, 824
BstMBI	GATC	5 cut(s)	48, 337, 460, 559, 799
BstMCI	CGRYCG	1 cut(s)	220
BstMWI	GCNNNNNNNGC	5 cut(s)	233, 353, 653, 710, 782
BstSCI	CCNGG	1 cut(s)	257
BstUI	CGCG	1 cut(s)	639
BstV1I	GCAGC	1 cut(s)	965
BstX2I	RGATCY	2 cut(s)	460, 799
BstYI	RGATCY	2 cut(s)	460, 799
BsuRI	GGCC	4 cut(s)	158, 165, 362, 621
BtsCI	GGATG	3 cut(s)	60, 78, 916
BtsIMutI	CAGTG	3 cut(s)	489, 700, 842
Cac8I	GCNNGC	3 cut(s)	783, 868, 981
CfoI	GCGC	1 cut(s)	641
Cfr13I	GGNCC	1 cut(s)	164
CseI	GACGC	1 cut(s)	260
Csp6I	GTAC	4 cut(s)	100, 510, 670, 751
CviAII	CATG	1 cut(s)	392
CviQI	GTAC	4 cut(s)	100, 510, 670, 751
DdeI	CTNAG	2 cut(s)	116, 228
DpnI	GATC	5 cut(s)	50, 339, 462, 561, 801
DpnII	GATC	5 cut(s)	48, 337, 460, 559, 799
EaeI	YGGCCR	1 cut(s)	619
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Ecl136II	GAGCTC	1 cut(s)	214
Eco24I	GRGCYC	1 cut(s)	216
Eco31I	GGTCTC	1 cut(s)	824
Eco53kI	GAGCTC	1 cut(s)	214
EcoICRI	GAGCTC	1 cut(s)	214
EcoT38I	GRGCYC	1 cut(s)	216
FaeI	CATG	1 cut(s)	395
FaiI	YATR	8 cut(s)	371, 393, 402, 447, 768, 774, 829, 878
FaqI	GGGAC	2 cut(s)	487, 906
FatI	CATG	1 cut(s)	391
FauI	CCCGC	1 cut(s)	204
FbaI	TGATCA	1 cut(s)	559
Fnu4HI	GCNGC	1 cut(s)	954
FokI	GGATG	3 cut(s)	47, 65, 923
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	1 cut(s)	954
FspBI	CTAG	1 cut(s)	986
GlaI	GCGC	1 cut(s)	640
GluI	GCNGC	1 cut(s)	954
GsuI	CTGGAG	1 cut(s)	978
HaeIII	GGCC	4 cut(s)	158, 165, 362, 621
HapII	CCGG	3 cut(s)	162, 258, 283
HgaI	GACGC	1 cut(s)	260
HhaI	GCGC	1 cut(s)	641
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	1 cut(s)	395
Hin6I	GCGC	1 cut(s)	639
HinP1I	GCGC	1 cut(s)	639
HinfI	GANTC	7 cut(s)	13, 141, 314, 379, 812, 970, 989
HpaII	CCGG	3 cut(s)	162, 258, 283
HphI	GGTGA	2 cut(s)	67, 965
Hpy166II	GTNNAC	2 cut(s)	633, 672
Hpy188I	TCNGA	3 cut(s)	48, 273, 376
Hpy188III	TCNNGA	2 cut(s)	302, 986
Hpy8I	GTNNAC	2 cut(s)	633, 672
Hpy99I	CGWCG	2 cut(s)	188, 254
HpyAV	CCTTC	6 cut(s)	40, 396, 594, 854, 883, 922
HpyCH4III	ACNGT	1 cut(s)	758
HpyCH4V	TGCA	5 cut(s)	335, 426, 440, 647, 698
HpyF10VI	GCNNNNNNNGC	5 cut(s)	233, 353, 653, 710, 782
HpyF3I	CTNAG	2 cut(s)	116, 228
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	1 cut(s)	395
HspAI	GCGC	1 cut(s)	639
Ksp22I	TGATCA	1 cut(s)	559
Kzo9I	GATC	5 cut(s)	48, 337, 460, 559, 799
LmnI	GCTCC	3 cut(s)	117, 198, 353
Lsp1109I	GCAGC	1 cut(s)	965
LweI	GCATC	2 cut(s)	413, 901
MaeI	CTAG	1 cut(s)	986
MaeIII	GTNAC	2 cut(s)	325, 758
MalI	GATC	5 cut(s)	50, 339, 462, 561, 801
MboI	GATC	5 cut(s)	48, 337, 460, 559, 799
MboII	GAAGA	3 cut(s)	374, 419, 719
MfeI	CAATTG	1 cut(s)	330
MflI	RGATCY	2 cut(s)	460, 799
MhlI	GDGCHC	1 cut(s)	216
MlsI	TGGCCA	1 cut(s)	621
MluCI	AATT	5 cut(s)	330, 366, 543, 555, 922
MluNI	TGGCCA	1 cut(s)	621
MlyI	GAGTC	2 cut(s)	135, 821
Mox20I	TGGCCA	1 cut(s)	621
MroXI	GAANNNNTTC	2 cut(s)	267, 278
MscI	TGGCCA	1 cut(s)	621
MseI	TTAA	1 cut(s)	572
MslI	CAYNNNNRTG	1 cut(s)	997
Msp20I	TGGCCA	1 cut(s)	621
MspA1I	CMGCKG	1 cut(s)	956
MspI	CCGG	3 cut(s)	162, 258, 283
MspR9I	CCNGG	1 cut(s)	259
MunI	CAATTG	1 cut(s)	330
MvnI	CGCG	1 cut(s)	639
MwoI	GCNNNNNNNGC	5 cut(s)	233, 353, 653, 710, 782
NciI	CCSGG	1 cut(s)	259
NdeII	GATC	5 cut(s)	48, 337, 460, 559, 799
NlaIII	CATG	1 cut(s)	395
NlaIV	GGNNCC	1 cut(s)	166
NmuCI	GTSAC	2 cut(s)	325, 758
NspV	TTCGAA	1 cut(s)	926
PdmI	GAANNNNTTC	2 cut(s)	267, 278
PfeI	GAWTC	5 cut(s)	13, 314, 379, 970, 989
PflFI	GACNNNGTC	1 cut(s)	182
PflMI	CCANNNNNTGG	1 cut(s)	548
PkrI	GCNGC	1 cut(s)	955
PleI	GAGTC	2 cut(s)	135, 820
PpsI	GAGTC	2 cut(s)	135, 820
Psp124BI	GAGCTC	1 cut(s)	216
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	1 cut(s)	164
PsuI	RGATCY	2 cut(s)	460, 799
PsyI	GACNNNGTC	1 cut(s)	182
PvuII	CAGCTG	1 cut(s)	956
RsaI	GTAC	4 cut(s)	101, 511, 671, 752
RsaNI	GTAC	4 cut(s)	100, 510, 670, 751
RseI	CAYNNNNRTG	1 cut(s)	997
SacI	GAGCTC	1 cut(s)	216
SaqAI	TTAA	1 cut(s)	572
SatI	GCNGC	1 cut(s)	954
Sau3AI	GATC	5 cut(s)	48, 337, 460, 559, 799
Sau96I	GGNCC	1 cut(s)	164
ScaI	AGTACT	1 cut(s)	101
SchI	GAGTC	2 cut(s)	135, 821
ScrFI	CCNGG	1 cut(s)	259
SduI	GDGCHC	1 cut(s)	216
SfaNI	GCATC	2 cut(s)	413, 901
SfuI	TTCGAA	1 cut(s)	926
SmiMI	CAYNNNNRTG	1 cut(s)	997
SmlI	CTYRAG	1 cut(s)	821
SmoI	CTYRAG	1 cut(s)	821
Sse9I	AATT	5 cut(s)	330, 366, 543, 555, 922
SsiI	CCGC	3 cut(s)	197, 220, 870
SspI	AATATT	1 cut(s)	278
SspMI	CTAG	1 cut(s)	986
SstI	GAGCTC	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	257
TaaI	ACNGT	1 cut(s)	758
TaqI	TCGA	5 cut(s)	139, 210, 216, 303, 926
TasI	AATT	5 cut(s)	330, 366, 543, 555, 922
TatI	WGTACW	2 cut(s)	99, 669
TfiI	GAWTC	5 cut(s)	13, 314, 379, 970, 989
Tru1I	TTAA	1 cut(s)	572
Tru9I	TTAA	1 cut(s)	572
TscAI	CASTG	3 cut(s)	496, 700, 849
TseFI	GTSAC	2 cut(s)	325, 758
TseI	GCWGC	1 cut(s)	953
Tsp45I	GTSAC	2 cut(s)	325, 758
TspDTI	ATGAA	1 cut(s)	981
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	3 cut(s)	496, 700, 849
Tth111I	GACNNNGTC	1 cut(s)	182
Van91I	CCANNNNNTGG	1 cut(s)	548
XapI	RAATTY	1 cut(s)	922
XbaI	TCTAGA	1 cut(s)	985
XmnI	GAANNNNTTC	2 cut(s)	267, 278
XspI	CTAG	1 cut(s)	986
ZrmI	AGTACT	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.