Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0010954

Physical Location & Seq

Genomic Coordinates Reverse (-)

50112109 .. 50116446

Gene Structure 4338 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00202170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGCTCTCCCAGATTCCCAAATCCCTCTCCTTCTTCCACAACCCTTCCACTCCCATTCCCATTCCCAATTCCAACTCTCCAACTCTCCGCTTCTCAACTCCCAATCCCTCACTCTCGCCCGCTCATCTCCCGCCTTTCAGCTCTTGCCGACCCACACTCGTCGCAATGGCCTCCGCCTCCGACCTCCCTAACGCCGTCGTTCCCCTCCCGCCCGGCGTCGACGATAGTGAGCTCGATCGCTTTGCCGCCGTCGCCAATAAAGTCGCCGATGCCTCCGGCGAAGTTATTCGGAAATATTTCCGGCAGAAATTCGATATTCTCGATAAACAAGATTCCAGCCCTGTGACCATTGCGGATCAAACAGCAGAGGAACATATGATTTCAGTTATATCAGAGAATTTTCCTTCTCATGCTGTTTATGGAGAGGAGAATGGGTGGAGGTGCAAAGAGACATATGCAGACTATGTTTGGGTATTAGACCCTATTGATGGGACAAAAAGTTTTATCACTGGAAAACCCGTGTTTGGTACTCTTATTTCTCTGCTACTGCGGGGCAAACCGATCCTTGGTATAATCGATCAGCCTATTTTAAGAGAGAGATGGCTCGGGGTAAGTGGAAGGAAAACTACGTTGAATGGAAAAGTAGTGTCGACACGCACATGCACAAACCTGGCACAAGCTTATCTGTACACTACAAGTCCACATCTATTCAGTCCAGAAGCAGAAGAGGCATTTATTCGCGTCAGGAATAAGGTTAAAGTGCCATTGTATGGATGTGACTGCTATGCTTATGCCCTTCTCGCTTCTGGTTATGTGGATCTTGTTGTTGAGTCTGGTCTCAAGCCATACGATTTTCTTTCACTGATACCTGTGATAGAAGGTTCTGGGGGTGTCATAACTGATTGGAAAGGACATCAGCTTTTGTGGGAGGCTTCTGCCAATTCACATGCAACAAGTTTTAATGTAGTGGCAGCTGGCGATAAACAGATTCACCAACAGGCTCTAAATTCATTACAATGGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004401 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0052745 GO:0052803 GO:0052834 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00053 ko00340 ko00562 ko01100 ko01110 ko01230 ko04070 map00053 map00340 map00562 map01100 map01110 map01230 map04070

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

341

Amino Acids

37.36

Weight (kDa)

6.07

Isoelectric Point (pI)

43.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inositol_P	PF00459	78 - 332	2.4e-57	Inositol monophosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39120 AT4G39120
fragaria_vesca	FvH4_2g09630 FvH4_2g09630 FvH4_2g09630 FvH4_2g09630
malus_domestica	MD05G1061200.v1.1 MD10G1068900.v1.1
prunus_persica	Prupe.8G090900_v2.0.a1
pyrus_communis	pycom05g05220 pycom10g05500
rosa_chinensis	RchiOBHm_Chr6g0265981
rosa_laevigata	RLG00000014141
rosa_multiflora	Rmu_sc0030533.1_g000003
rosa_roxburghii	Rroxscaffold_7G00202170
rosa_rugosa	Rorug06G0022100
rosa_samantha	Rh6AG143300 Rh6BG143600 Rh6CG140300
rosa_wichuraiana	Rw6G012390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	770
AccBSI	CCGCTC	1 cut(s)	122
AccI	GTMKAC	2 cut(s)	219, 650
AccII	CGCG	1 cut(s)	741
AciI	CCGC	8 cut(s)	88, 120, 131, 174, 209, 246, 353, 550
AclWI	GGATC	3 cut(s)	363, 556, 825
AcsI	RAATTY	3 cut(s)	308, 397, 1006
AcyI	GRCGYC	1 cut(s)	216
AfaI	GTAC	2 cut(s)	529, 689
AfiI	CCNNNNNNNGG	4 cut(s)	488, 524, 566, 770
AgsI	TTSAA	1 cut(s)	634
AjnI	CCWGG	1 cut(s)	669
AluBI	AGCT	5 cut(s)	141, 232, 680, 919, 974
AluI	AGCT	5 cut(s)	141, 232, 680, 919, 974
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	2 cut(s)	443, 842
AlwI	GGATC	3 cut(s)	363, 556, 825
Ama87I	CYCGRG	1 cut(s)	605
AoxI	GGCC	1 cut(s)	168
ApeKI	GCWGC	1 cut(s)	971
ApoI	RAATTY	3 cut(s)	308, 397, 1006
Asp700I	GAANNNNTTC	2 cut(s)	285, 296
AsuC2I	CCSGG	1 cut(s)	213
AsuHPI	GGTGA	1 cut(s)	983
AvaI	CYCGRG	1 cut(s)	605
BanII	GRGCYC	1 cut(s)	234
BarI	GAAGNNNNNNTAC	2 cut(s)	610, 642
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	983
BccI	CCATC	2 cut(s)	482, 594
BceAI	ACGGC	2 cut(s)	179, 233
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BciT130I	CCWGG	1 cut(s)	671
BcnI	CCSGG	1 cut(s)	213
BcoDI	GTCTC	2 cut(s)	443, 842
BisI	GCNGC	2 cut(s)	246, 972
BlsI	GCNGC	2 cut(s)	247, 973
Bme1390I	CCNGG	2 cut(s)	213, 671
BmeT110I	CYCGRG	1 cut(s)	605
BmrFI	CCNGG	2 cut(s)	213, 671
BmsI	GCATC	1 cut(s)	259
BpuEI	CTTGAG	1 cut(s)	824
BpuMI	CCSGG	1 cut(s)	213
Bsa29I	ATCGAT	1 cut(s)	576
BsaHI	GRCGYC	1 cut(s)	216
BsaI	GGTCTC	1 cut(s)	842
BsaJI	CCNNGG	1 cut(s)	565
BsaXI	ACNNNNNCTCC	2 cut(s)	419, 449
Bsc4I	CCNNNNNNNGG	4 cut(s)	488, 524, 566, 770
Bse1I	ACTGG	1 cut(s)	514
Bse3DI	GCAATG	2 cut(s)	171, 348
BseBI	CCWGG	1 cut(s)	671
BseCI	ATCGAT	1 cut(s)	576
BseDI	CCNNGG	1 cut(s)	565
BseGI	GGATG	1 cut(s)	779
BseLI	CCNNNNNNNGG	4 cut(s)	488, 524, 566, 770
BseMI	GCAATG	2 cut(s)	171, 348
BseNI	ACTGG	1 cut(s)	514
BseRI	GAGGAG	1 cut(s)	440
BseXI	GCAGC	1 cut(s)	983
Bsh1236I	CGCG	1 cut(s)	741
Bsh1285I	CGRYCG	1 cut(s)	238
BshFI	GGCC	1 cut(s)	170
BshVI	ATCGAT	1 cut(s)	576
BsiEI	CGRYCG	1 cut(s)	238
BsiHKAI	GWGCWC	1 cut(s)	234
BsiHKCI	CYCGRG	1 cut(s)	605
BsiSI	CCGG	3 cut(s)	213, 276, 301
BslFI	GGGAC	1 cut(s)	505
BslI	CCNNNNNNNGG	4 cut(s)	488, 524, 566, 770
BsmAI	GTCTC	2 cut(s)	443, 842
BsmFI	GGGAC	1 cut(s)	505
BsnI	GGCC	1 cut(s)	170
Bso31I	GGTCTC	1 cut(s)	842
BsoBI	CYCGRG	1 cut(s)	605
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp1407I	TGTACA	1 cut(s)	687
Bsp143I	GATC	5 cut(s)	235, 355, 561, 577, 817
BspACI	CCGC	8 cut(s)	88, 120, 131, 174, 209, 246, 353, 550
BspANI	GGCC	1 cut(s)	170
BspDI	ATCGAT	1 cut(s)	576
BspFNI	CGCG	1 cut(s)	741
BspPI	GGATC	3 cut(s)	363, 556, 825
BspTNI	GGTCTC	1 cut(s)	842
BsrBI	CCGCTC	1 cut(s)	122
BsrDI	GCAATG	2 cut(s)	171, 348
BsrGI	TGTACA	1 cut(s)	687
BsrI	ACTGG	1 cut(s)	514
BssECI	CCNNGG	1 cut(s)	565
BssMI	GATC	5 cut(s)	235, 355, 561, 577, 817
BssNI	GRCGYC	1 cut(s)	216
BssT1I	CCWWGG	1 cut(s)	565
Bst2UI	CCWGG	1 cut(s)	671
Bst6I	CTCTTC	1 cut(s)	720
BstACI	GRCGYC	1 cut(s)	216
BstAUI	TGTACA	1 cut(s)	687
BstC8I	GCNNGC	2 cut(s)	120, 976
BstF5I	GGATG	1 cut(s)	779
BstFNI	CGCG	1 cut(s)	741
BstKTI	GATC	5 cut(s)	238, 358, 564, 580, 820
BstMAI	GTCTC	2 cut(s)	443, 842
BstMBI	GATC	5 cut(s)	235, 355, 561, 577, 817
BstMCI	CGRYCG	1 cut(s)	238
BstMWI	GCNNNNNNNGC	3 cut(s)	251, 728, 800
BstNI	CCWGG	1 cut(s)	671
BstNSI	RCATGY	2 cut(s)	663, 950
BstSCI	CCNGG	2 cut(s)	211, 669
BstUI	CGCG	1 cut(s)	741
BstV1I	GCAGC	1 cut(s)	983
BstX2I	RGATCY	1 cut(s)	817
BstYI	RGATCY	1 cut(s)	817
Bsu15I	ATCGAT	1 cut(s)	576
BsuRI	GGCC	1 cut(s)	170
BsuTUI	ATCGAT	1 cut(s)	576
BtsCI	GGATG	1 cut(s)	779
BtsIMutI	CAGTG	2 cut(s)	507, 860
Cac8I	GCNNGC	2 cut(s)	120, 976
ClaI	ATCGAT	1 cut(s)	576
CseI	GACGC	2 cut(s)	205, 730
Csp6I	GTAC	2 cut(s)	528, 688
CviAII	CATG	3 cut(s)	410, 660, 947
CviQI	GTAC	2 cut(s)	528, 688
DpnI	GATC	5 cut(s)	237, 357, 563, 579, 819
DpnII	GATC	5 cut(s)	235, 355, 561, 577, 817
Eam1104I	CTCTTC	1 cut(s)	720
EarI	CTCTTC	1 cut(s)	720
EciI	GGCGGA	1 cut(s)	163
Ecl136II	GAGCTC	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	565
Eco24I	GRGCYC	1 cut(s)	234
Eco31I	GGTCTC	1 cut(s)	842
Eco53kI	GAGCTC	1 cut(s)	232
Eco88I	CYCGRG	1 cut(s)	605
EcoICRI	GAGCTC	1 cut(s)	232
EcoRII	CCWGG	1 cut(s)	669
EcoT14I	CCWWGG	1 cut(s)	565
EcoT38I	GRGCYC	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	565
FaeI	CATG	3 cut(s)	413, 663, 950
FaqI	GGGAC	1 cut(s)	505
FatI	CATG	3 cut(s)	409, 659, 946
FauI	CCCGC	4 cut(s)	127, 138, 216, 543
FauNDI	CATATG	2 cut(s)	375, 454
FblI	GTMKAC	2 cut(s)	219, 650
Fnu4HI	GCNGC	2 cut(s)	246, 972
FokI	GGATG	1 cut(s)	786
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	2 cut(s)	246, 972
GluI	GCNGC	2 cut(s)	246, 972
HaeIII	GGCC	1 cut(s)	170
HapII	CCGG	3 cut(s)	213, 276, 301
HgaI	GACGC	2 cut(s)	205, 730
Hin1I	GRCGYC	1 cut(s)	216
Hin1II	CATG	3 cut(s)	413, 663, 950
HincII	GTYRAC	2 cut(s)	220, 651
HindII	GTYRAC	2 cut(s)	220, 651
HindIII	AAGCTT	1 cut(s)	678
HinfI	GANTC	4 cut(s)	13, 332, 830, 988
HpaII	CCGG	3 cut(s)	213, 276, 301
HphI	GGTGA	1 cut(s)	983
Hpy166II	GTNNAC	4 cut(s)	220, 651, 690, 701
Hpy188I	TCNGA	3 cut(s)	181, 291, 394
Hpy188III	TCNNGA	3 cut(s)	320, 716, 745
Hpy8I	GTNNAC	4 cut(s)	220, 651, 690, 701
Hpy99I	CGWCG	5 cut(s)	164, 200, 221, 224, 254
HpyAV	CCTTC	6 cut(s)	40, 54, 414, 612, 806, 872
HpyCH4IV	ACGT	1 cut(s)	629
HpyCH4V	TGCA	4 cut(s)	444, 458, 663, 950
HpyF10VI	GCNNNNNNNGC	3 cut(s)	251, 728, 800
HpySE526I	ACGT	1 cut(s)	629
Hsp92I	GRCGYC	1 cut(s)	216
Hsp92II	CATG	3 cut(s)	413, 663, 950
Kzo9I	GATC	5 cut(s)	235, 355, 561, 577, 817
Lsp1109I	GCAGC	1 cut(s)	983
LweI	GCATC	1 cut(s)	259
MaeII	ACGT	1 cut(s)	629
MaeIII	GTNAC	2 cut(s)	343, 776
MalI	GATC	5 cut(s)	237, 357, 563, 579, 819
MbiI	CCGCTC	1 cut(s)	122
MboI	GATC	5 cut(s)	235, 355, 561, 577, 817
MboII	GAAGA	2 cut(s)	25, 737
MflI	RGATCY	1 cut(s)	817
MhlI	GDGCHC	1 cut(s)	234
MluCI	AATT	5 cut(s)	67, 308, 397, 940, 1006
MlyI	GAGTC	1 cut(s)	839
MmeI	TCCRAC	3 cut(s)	96, 104, 204
MroXI	GAANNNNTTC	2 cut(s)	285, 296
MseI	TTAA	3 cut(s)	590, 756, 960
MslI	CAYNNNNRTG	2 cut(s)	658, 1015
MspA1I	CMGCKG	1 cut(s)	974
MspI	CCGG	3 cut(s)	213, 276, 301
MspR9I	CCNGG	2 cut(s)	213, 671
MvaI	CCWGG	1 cut(s)	671
MvnI	CGCG	1 cut(s)	741
MwoI	GCNNNNNNNGC	3 cut(s)	251, 728, 800
NciI	CCSGG	1 cut(s)	213
NdeI	CATATG	2 cut(s)	375, 454
NdeII	GATC	5 cut(s)	235, 355, 561, 577, 817
NlaIII	CATG	3 cut(s)	413, 663, 950
NmuCI	GTSAC	2 cut(s)	343, 776
NspI	RCATGY	2 cut(s)	663, 950
PcsI	WCGNNNNNNNCGW	1 cut(s)	318
PdmI	GAANNNNTTC	2 cut(s)	285, 296
PfeI	GAWTC	3 cut(s)	13, 332, 988
PflMI	CCANNNNNTGG	1 cut(s)	770
PkrI	GCNGC	2 cut(s)	247, 973
Ple19I	CGATCG	1 cut(s)	238
PleI	GAGTC	1 cut(s)	838
PpsI	GAGTC	1 cut(s)	838
Psp124BI	GAGCTC	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	669
PspGI	CCWGG	1 cut(s)	669
PsuI	RGATCY	1 cut(s)	817
PvuI	CGATCG	1 cut(s)	238
PvuII	CAGCTG	1 cut(s)	974
RsaI	GTAC	2 cut(s)	529, 689
RsaNI	GTAC	2 cut(s)	528, 688
RseI	CAYNNNNRTG	2 cut(s)	658, 1015
SacI	GAGCTC	1 cut(s)	234
SalI	GTCGAC	2 cut(s)	218, 649
SaqAI	TTAA	3 cut(s)	590, 756, 960
SatI	GCNGC	2 cut(s)	246, 972
Sau3AI	GATC	5 cut(s)	235, 355, 561, 577, 817
SchI	GAGTC	1 cut(s)	839
ScrFI	CCNGG	2 cut(s)	213, 671
SduI	GDGCHC	1 cut(s)	234
SfaNI	GCATC	1 cut(s)	259
SgrDI	CGTCGACG	1 cut(s)	218
SmiMI	CAYNNNNRTG	2 cut(s)	658, 1015
SmlI	CTYRAG	1 cut(s)	839
SmoI	CTYRAG	1 cut(s)	839
Sse9I	AATT	5 cut(s)	67, 308, 397, 940, 1006
SsiI	CCGC	8 cut(s)	88, 120, 131, 174, 209, 246, 353, 550
SspI	AATATT	1 cut(s)	296
SstI	GAGCTC	1 cut(s)	234
StyD4I	CCNGG	2 cut(s)	211, 669
StyI	CCWWGG	1 cut(s)	565
TaiI	ACGT	1 cut(s)	632
TaqI	TCGA	6 cut(s)	219, 234, 312, 321, 576, 650
TasI	AATT	5 cut(s)	67, 308, 397, 940, 1006
TatI	WGTACW	1 cut(s)	687
TauI	GCSGC	1 cut(s)	248
TfiI	GAWTC	3 cut(s)	13, 332, 988
Tru1I	TTAA	3 cut(s)	590, 756, 960
Tru9I	TTAA	3 cut(s)	590, 756, 960
TscAI	CASTG	2 cut(s)	514, 867
TseFI	GTSAC	2 cut(s)	343, 776
TseI	GCWGC	1 cut(s)	971
Tsp45I	GTSAC	2 cut(s)	343, 776
TspDTI	ATGAA	1 cut(s)	999
TspRI	CASTG	2 cut(s)	514, 867
Van91I	CCANNNNNTGG	1 cut(s)	770
XapI	RAATTY	3 cut(s)	308, 397, 1006
XceI	RCATGY	2 cut(s)	663, 950
XmiI	GTMKAC	2 cut(s)	219, 650
XmnI	GAANNNNTTC	2 cut(s)	285, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.