Rh6BG143600

Bifunctional phosphatase IMPL2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0010954
Physical Location & Seq
Forward (+)
23000879 .. 23010635
9757 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG143600.1

Sequence Viewer

Length: 1026 bp
ATGCTCTCCCAGATTCCCAAATCCCTCTCCTTCTTCCACAACCCTTCCATTCCCATTCCCATTCCCAATTCCAACTCTCCAACTCTCCGCTTCTCAACTCCCAATCCCTCACTCTCGCTCGCTCATCTCCCGCCTTTCAGCTGTTGCCGTCCCACACTCGTCGCAATGGCCTCCGCCTCCGACCTCCCTAACGCCGTCGTTCCCCTCCCGCCCGGCGTTGACGAGAATGAGCTTGATCGCTTTGCCACCGTCGCCAATAAAGTTGCCGATGCCTCCGGCGAAGTTATTCGGAAATATTTCCGGCAGAAATTCGATATTCTCGATAAAGAAGATTCCAGCCCTGTGACCATTGCGGATCAAACAGCAGAGGAACATATGATTTCAGTTATATCAGAGAATTTTCCTTCTCATGCTGTCTACGGAGAGGAGAATGGGTGGAGGTGCAAAGAGACATATGCAGACTATGTTTGGGTATTAGACCCTATTGATGGGACAAAAAGTTTTATCACTGGAAAACCCGTGTTTGGTACTCTTATTTCTCTGCTACTGCGGGGCAAACCAATCCTTGGTATAATCGATCAGCCTATTTTAAGAGAGAGATGGCTCGGGGTAAGTGGAAGGAAAACTACATTGAATGGAAAAGTAGTGTCGACACGCACATGCGCAAACCTGGCACAAGCTTATCTGTACACTACAAGTCCACATCTATTCAGTGCAGAAGCAGAAGAGGCATTTATTCGCGTCAGAAATAAGGTTAAAGTGCCATTGTATGGATGTGACTGCTATGCTTATGCCCTTCTGGCTTCTGGTTATGTGGATCTTGTTGTTGAGTCTGGTCTCAAGCCATACGATTTTCTTTCACTGATACCTGTGATAGAAGGTTCTGGGGGTGTCATAACTGATTGGAAAGGACATCAGCTTTTGTGGGAGGCTTCTGCCAATTCACATGCAACAAGTTTTAATGTAGTGGCAGCTGGAGATAAACAGATTCACCAACAAGCTTTAAATTCATTACAATGGCAATGA

Protein Analysis

341

Amino Acids

37.42

Weight (kDa)

5.92

Isoelectric Point (pI)

37.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inositol_P PF00459 78 - 332 4.1e-57 Inositol monophosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010954)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39120 AT4G39120
fragaria_vesca FvH4_2g09630 FvH4_2g09630 FvH4_2g09630 FvH4_2g09630
malus_domestica MD05G1061200.v1.1 MD10G1068900.v1.1
prunus_persica Prupe.8G090900_v2.0.a1
pyrus_communis pycom05g05220 pycom10g05500
rosa_chinensis RchiOBHm_Chr6g0265981
rosa_laevigata RLG00000014141
rosa_multiflora Rmu_sc0030533.1_g000003
rosa_roxburghii Rroxscaffold_7G00202170
rosa_rugosa Rorug06G0022100
rosa_samantha Rh6AG143300 Rh6BG143600 Rh6CG140300
rosa_wichuraiana Rw6G012390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 664
AccB7I CCANNNNNTGG 2 cut(s) 566, 770
AccI GTMKAC 2 cut(s) 417, 650
AccII CGCG 1 cut(s) 741
AciI CCGC 6 cut(s) 88, 131, 174, 209, 353, 550
AclWI GGATC 2 cut(s) 363, 825
AcsI RAATTY 3 cut(s) 308, 397, 1006
AfaI GTAC 2 cut(s) 529, 689
AfiI CCNNNNNNNGG 4 cut(s) 488, 524, 566, 770
AgsI TTSAA 1 cut(s) 634
AjnI CCWGG 1 cut(s) 669
AluBI AGCT 6 cut(s) 141, 232, 680, 919, 974, 1001
AluI AGCT 6 cut(s) 141, 232, 680, 919, 974, 1001
Alw26I GTCTC 2 cut(s) 443, 842
AlwI GGATC 2 cut(s) 363, 825
Ama87I CYCGRG 1 cut(s) 605
AoxI GGCC 1 cut(s) 168
ApeKI GCWGC 1 cut(s) 971
ApoI RAATTY 3 cut(s) 308, 397, 1006
Asp700I GAANNNNTTC 2 cut(s) 285, 296
AspLEI GCGC 1 cut(s) 665
AsuC2I CCSGG 1 cut(s) 213
AsuHPI GGTGA 1 cut(s) 983
AvaI CYCGRG 1 cut(s) 605
BarI GAAGNNNNNNTAC 2 cut(s) 610, 642
BbvI GCAGC 1 cut(s) 983
BccI CCATC 2 cut(s) 482, 594
BceAI ACGGC 2 cut(s) 132, 179
BciT130I CCWGG 1 cut(s) 671
BcnI CCSGG 1 cut(s) 213
BcoDI GTCTC 2 cut(s) 443, 842
BglI GCCNNNNNGGC 1 cut(s) 800
BisI GCNGC 1 cut(s) 972
BlsI GCNGC 1 cut(s) 973
Bme1390I CCNGG 2 cut(s) 213, 671
BmeT110I CYCGRG 1 cut(s) 605
BmrFI CCNGG 2 cut(s) 213, 671
BmsI GCATC 1 cut(s) 259
BpmI CTGGAG 1 cut(s) 996
BpuEI CTTGAG 1 cut(s) 824
BpuMI CCSGG 1 cut(s) 213
Bsa29I ATCGAT 1 cut(s) 576
BsaI GGTCTC 1 cut(s) 842
BsaJI CCNNGG 1 cut(s) 565
BsaXI ACNNNNNCTCC 2 cut(s) 419, 449
Bsc4I CCNNNNNNNGG 4 cut(s) 488, 524, 566, 770
Bse1I ACTGG 1 cut(s) 514
Bse3DI GCAATG 2 cut(s) 171, 348
BseBI CCWGG 1 cut(s) 671
BseCI ATCGAT 1 cut(s) 576
BseDI CCNNGG 1 cut(s) 565
BseGI GGATG 1 cut(s) 779
BseLI CCNNNNNNNGG 4 cut(s) 488, 524, 566, 770
BseMI GCAATG 2 cut(s) 171, 348
BseNI ACTGG 1 cut(s) 514
BseRI GAGGAG 1 cut(s) 440
BseXI GCAGC 1 cut(s) 983
BsgI GTGCAG 1 cut(s) 735
Bsh1236I CGCG 1 cut(s) 741
BshFI GGCC 1 cut(s) 170
BshVI ATCGAT 1 cut(s) 576
BsiHKCI CYCGRG 1 cut(s) 605
BsiSI CCGG 3 cut(s) 213, 276, 301
BslFI GGGAC 2 cut(s) 135, 505
BslI CCNNNNNNNGG 4 cut(s) 488, 524, 566, 770
BsmAI GTCTC 2 cut(s) 443, 842
BsmFI GGGAC 2 cut(s) 135, 505
BsnI GGCC 1 cut(s) 170
Bso31I GGTCTC 1 cut(s) 842
BsoBI CYCGRG 1 cut(s) 605
Bsp1407I TGTACA 1 cut(s) 687
Bsp143I GATC 4 cut(s) 235, 355, 577, 817
BspACI CCGC 6 cut(s) 88, 131, 174, 209, 353, 550
BspANI GGCC 1 cut(s) 170
BspDI ATCGAT 1 cut(s) 576
BspFNI CGCG 1 cut(s) 741
BspPI GGATC 2 cut(s) 363, 825
BspTNI GGTCTC 1 cut(s) 842
BsrDI GCAATG 2 cut(s) 171, 348
BsrGI TGTACA 1 cut(s) 687
BsrI ACTGG 1 cut(s) 514
BssECI CCNNGG 1 cut(s) 565
BssMI GATC 4 cut(s) 235, 355, 577, 817
BssT1I CCWWGG 1 cut(s) 565
Bst2UI CCWGG 1 cut(s) 671
Bst4CI ACNGT 1 cut(s) 250
Bst6I CTCTTC 1 cut(s) 720
BstAUI TGTACA 1 cut(s) 687
BstC8I GCNNGC 1 cut(s) 120
BstF5I GGATG 1 cut(s) 779
BstFNI CGCG 1 cut(s) 741
BstHHI GCGC 1 cut(s) 665
BstKTI GATC 4 cut(s) 238, 358, 580, 820
BstMAI GTCTC 2 cut(s) 443, 842
BstMBI GATC 4 cut(s) 235, 355, 577, 817
BstMWI GCNNNNNNNGC 4 cut(s) 251, 671, 728, 800
BstNI CCWGG 1 cut(s) 671
BstNSI RCATGY 2 cut(s) 663, 950
BstSCI CCNGG 2 cut(s) 211, 669
BstUI CGCG 1 cut(s) 741
BstV1I GCAGC 1 cut(s) 983
BstX2I RGATCY 1 cut(s) 817
BstYI RGATCY 1 cut(s) 817
Bsu15I ATCGAT 1 cut(s) 576
BsuRI GGCC 1 cut(s) 170
BsuTUI ATCGAT 1 cut(s) 576
BtsCI GGATG 1 cut(s) 779
BtsIMutI CAGTG 3 cut(s) 507, 718, 860
Cac8I GCNNGC 1 cut(s) 120
CfoI GCGC 1 cut(s) 665
ClaI ATCGAT 1 cut(s) 576
CseI GACGC 1 cut(s) 730
Csp6I GTAC 2 cut(s) 528, 688
CviAII CATG 3 cut(s) 410, 660, 947
CviQI GTAC 2 cut(s) 528, 688
DpnI GATC 4 cut(s) 237, 357, 579, 819
DpnII GATC 4 cut(s) 235, 355, 577, 817
DraI TTTAAA 1 cut(s) 1005
Eam1104I CTCTTC 1 cut(s) 720
EarI CTCTTC 1 cut(s) 720
EciI GGCGGA 1 cut(s) 163
Eco130I CCWWGG 1 cut(s) 565
Eco31I GGTCTC 1 cut(s) 842
Eco88I CYCGRG 1 cut(s) 605
EcoRII CCWGG 1 cut(s) 669
EcoT14I CCWWGG 1 cut(s) 565
ErhI CCWWGG 1 cut(s) 565
FaeI CATG 3 cut(s) 413, 663, 950
FaqI GGGAC 2 cut(s) 135, 505
FatI CATG 3 cut(s) 409, 659, 946
FauI CCCGC 3 cut(s) 138, 216, 543
FauNDI CATATG 2 cut(s) 375, 454
FblI GTMKAC 2 cut(s) 417, 650
Fnu4HI GCNGC 1 cut(s) 972
FokI GGATG 1 cut(s) 786
Fsp4HI GCNGC 1 cut(s) 972
FspI TGCGCA 1 cut(s) 664
GlaI GCGC 1 cut(s) 664
GluI GCNGC 1 cut(s) 972
GsuI CTGGAG 1 cut(s) 996
HaeIII GGCC 1 cut(s) 170
HapII CCGG 3 cut(s) 213, 276, 301
HgaI GACGC 1 cut(s) 730
HhaI GCGC 1 cut(s) 665
Hin1II CATG 3 cut(s) 413, 663, 950
Hin6I GCGC 1 cut(s) 663
HinP1I GCGC 1 cut(s) 663
HincII GTYRAC 2 cut(s) 220, 651
HindII GTYRAC 2 cut(s) 220, 651
HindIII AAGCTT 2 cut(s) 678, 999
HinfI GANTC 4 cut(s) 13, 332, 830, 988
HpaII CCGG 3 cut(s) 213, 276, 301
HphI GGTGA 1 cut(s) 983
Hpy166II GTNNAC 5 cut(s) 220, 418, 651, 690, 701
Hpy188I TCNGA 4 cut(s) 181, 291, 394, 746
Hpy188III TCNNGA 1 cut(s) 320
Hpy8I GTNNAC 5 cut(s) 220, 418, 651, 690, 701
Hpy99I CGWCG 3 cut(s) 164, 200, 254
HpyAV CCTTC 6 cut(s) 40, 54, 414, 612, 806, 872
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4V TGCA 4 cut(s) 444, 458, 716, 950
HpyF10VI GCNNNNNNNGC 4 cut(s) 251, 671, 728, 800
Hsp92II CATG 3 cut(s) 413, 663, 950
HspAI GCGC 1 cut(s) 663
Kzo9I GATC 4 cut(s) 235, 355, 577, 817
Lsp1109I GCAGC 1 cut(s) 983
LweI GCATC 1 cut(s) 259
MaeIII GTNAC 2 cut(s) 343, 776
MalI GATC 4 cut(s) 237, 357, 579, 819
MboI GATC 4 cut(s) 235, 355, 577, 817
MboII GAAGA 3 cut(s) 25, 341, 737
MflI RGATCY 1 cut(s) 817
MluCI AATT 5 cut(s) 67, 308, 397, 940, 1006
MlyI GAGTC 1 cut(s) 839
MmeI TCCRAC 3 cut(s) 96, 104, 204
MroXI GAANNNNTTC 2 cut(s) 285, 296
MseI TTAA 4 cut(s) 590, 756, 960, 1004
MslI CAYNNNNRTG 2 cut(s) 658, 1015
MspA1I CMGCKG 2 cut(s) 141, 974
MspI CCGG 3 cut(s) 213, 276, 301
MspR9I CCNGG 2 cut(s) 213, 671
MvaI CCWGG 1 cut(s) 671
MvnI CGCG 1 cut(s) 741
MwoI GCNNNNNNNGC 4 cut(s) 251, 671, 728, 800
NciI CCSGG 1 cut(s) 213
NdeI CATATG 2 cut(s) 375, 454
NdeII GATC 4 cut(s) 235, 355, 577, 817
NlaIII CATG 3 cut(s) 413, 663, 950
NmuCI GTSAC 2 cut(s) 343, 776
NsbI TGCGCA 1 cut(s) 664
NspI RCATGY 2 cut(s) 663, 950
PcsI WCGNNNNNNNCGW 1 cut(s) 318
PdmI GAANNNNTTC 2 cut(s) 285, 296
PfeI GAWTC 3 cut(s) 13, 332, 988
PflMI CCANNNNNTGG 2 cut(s) 566, 770
PkrI GCNGC 1 cut(s) 973
PleI GAGTC 1 cut(s) 838
PpsI GAGTC 1 cut(s) 838
Psp6I CCWGG 1 cut(s) 669
PspGI CCWGG 1 cut(s) 669
PsuI RGATCY 1 cut(s) 817
PvuII CAGCTG 2 cut(s) 141, 974
RsaI GTAC 2 cut(s) 529, 689
RsaNI GTAC 2 cut(s) 528, 688
RseI CAYNNNNRTG 2 cut(s) 658, 1015
SalI GTCGAC 1 cut(s) 649
SaqAI TTAA 4 cut(s) 590, 756, 960, 1004
SatI GCNGC 1 cut(s) 972
Sau3AI GATC 4 cut(s) 235, 355, 577, 817
SchI GAGTC 1 cut(s) 839
ScrFI CCNGG 2 cut(s) 213, 671
SfaNI GCATC 1 cut(s) 259
SmiMI CAYNNNNRTG 2 cut(s) 658, 1015
SmlI CTYRAG 1 cut(s) 839
SmoI CTYRAG 1 cut(s) 839
Sse9I AATT 5 cut(s) 67, 308, 397, 940, 1006
SsiI CCGC 6 cut(s) 88, 131, 174, 209, 353, 550
SspI AATATT 1 cut(s) 296
StyD4I CCNGG 2 cut(s) 211, 669
StyI CCWWGG 1 cut(s) 565
TaaI ACNGT 1 cut(s) 250
TaqI TCGA 4 cut(s) 312, 321, 576, 650
TasI AATT 5 cut(s) 67, 308, 397, 940, 1006
TatI WGTACW 1 cut(s) 687
TfiI GAWTC 3 cut(s) 13, 332, 988
Tru1I TTAA 4 cut(s) 590, 756, 960, 1004
Tru9I TTAA 4 cut(s) 590, 756, 960, 1004
TscAI CASTG 3 cut(s) 514, 718, 867
TseFI GTSAC 2 cut(s) 343, 776
TseI GCWGC 1 cut(s) 971
Tsp45I GTSAC 2 cut(s) 343, 776
TspDTI ATGAA 1 cut(s) 999
TspGWI ACGGA 1 cut(s) 435
TspRI CASTG 3 cut(s) 514, 718, 867
Van91I CCANNNNNTGG 2 cut(s) 566, 770
XapI RAATTY 3 cut(s) 308, 397, 1006
XceI RCATGY 2 cut(s) 663, 950
XmiI GTMKAC 2 cut(s) 417, 650
XmnI GAANNNNTTC 2 cut(s) 285, 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.