Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030533.1

Orthogroup ID

OG0010954

Physical Location & Seq

Genomic Coordinates Reverse (-)

15423 .. 19179

Gene Structure 3757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030533.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

atgctctcccagattcccaaatccctctccttattccacaacccttccattcccaattccaactctccaactctccgcttctcaactcccaatccctcactctcgctcgctcatctcccgcctttcagctgttgccgatccacactcgtcgcaatggcctctgcctctgacctccctaatgccgtcgttcccctcccgcccggcgttgacgagagtgagctcgatcgctttgccaccgtcgccaataaagtcgccgatgcctccggcgaagttattcggaactatttccggcagaaattcgatattctcgataaagaagattccagccctgtgaccattgcagatcaaacagcagaggaacatatgatttcagttatatcacagaattttccttctcatgctgtttatggagaggagaatgggtggaggtgcaaagagacgtatgcagactatgtttgggtattagaccctattgatgggacaaaaagttttatcactggaaaacccgtgtttggtactcttatttctctgctactgcggggcaaaccaatccttggtataatcgatcagcctattttaagagagagatggctcggggtaagtggaaggaaaactacattgaatggaaaagtagcatcaacacgcaaatgcgcaaacctggcacaagcttatctgtacactacaagtccacatctattcagtgcagaagcagaagaggcatttattcgcgtcagaaataaggttaaagtgccattgtatggatgtgactgctatgcttatgcccttctggcttctggttatgtggatcttgttgttgagtctggtctcaagccatacgattttctttcactgatacctgtgatagaaggttctgggggtgtcataactgattggaaaggacatcagcttttgtgggaggcttctgccaattcacatgcaacaagttttaatgtagtggcagctggagataaacagattcaccaacaagctctaaattcattacaatggcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004401 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0052745 GO:0052803 GO:0052834 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00053 ko00340 ko00562 ko01100 ko01110 ko01230 ko04070 map00053 map00340 map00562 map01100 map01110 map01230 map04070

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

337

Amino Acids

36.91

Weight (kDa)

6.07

Isoelectric Point (pI)

39.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39120 AT4G39120
fragaria_vesca	FvH4_2g09630 FvH4_2g09630 FvH4_2g09630 FvH4_2g09630
malus_domestica	MD05G1061200.v1.1 MD10G1068900.v1.1
prunus_persica	Prupe.8G090900_v2.0.a1
pyrus_communis	pycom05g05220 pycom10g05500
rosa_chinensis	RchiOBHm_Chr6g0265981
rosa_laevigata	RLG00000014141
rosa_multiflora	Rmu_sc0030533.1_g000003
rosa_roxburghii	Rroxscaffold_7G00202170
rosa_rugosa	Rorug06G0022100
rosa_samantha	Rh6AG143300 Rh6BG143600 Rh6CG140300
rosa_wichuraiana	Rw6G012390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	652
AccB7I	CCANNNNNTGG	2 cut(s)	554, 758
AccII	CGCG	1 cut(s)	729
AciI	CCGC	4 cut(s)	76, 119, 197, 538
AclWI	GGATC	2 cut(s)	132, 813
AcsI	RAATTY	3 cut(s)	296, 385, 994
AfaI	GTAC	2 cut(s)	517, 677
AfiI	CCNNNNNNNGG	4 cut(s)	476, 512, 554, 758
AgsI	TTSAA	1 cut(s)	622
AjnI	CCWGG	1 cut(s)	657
AluBI	AGCT	6 cut(s)	129, 220, 668, 907, 962, 989
AluI	AGCT	6 cut(s)	129, 220, 668, 907, 962, 989
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	2 cut(s)	431, 830
AlwI	GGATC	2 cut(s)	132, 813
Ama87I	CYCGRG	1 cut(s)	593
AoxI	GGCC	1 cut(s)	156
ApeKI	GCWGC	1 cut(s)	959
ApoI	RAATTY	3 cut(s)	296, 385, 994
Asp700I	GAANNNNTTC	2 cut(s)	273, 284
AspLEI	GCGC	1 cut(s)	653
AsuC2I	CCSGG	1 cut(s)	201
AsuHPI	GGTGA	1 cut(s)	971
AvaI	CYCGRG	1 cut(s)	593
BanII	GRGCYC	1 cut(s)	222
BarI	GAAGNNNNNNTAC	2 cut(s)	598, 630
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	971
BccI	CCATC	2 cut(s)	470, 582
BceAI	ACGGC	1 cut(s)	167
BcgI	CGANNNNNNTGC	2 cut(s)	212, 246
BciT130I	CCWGG	1 cut(s)	659
BcnI	CCSGG	1 cut(s)	201
BcoDI	GTCTC	2 cut(s)	431, 830
BglI	GCCNNNNNGGC	1 cut(s)	788
BisI	GCNGC	1 cut(s)	960
BlsI	GCNGC	1 cut(s)	961
Bme1390I	CCNGG	2 cut(s)	201, 659
BmeT110I	CYCGRG	1 cut(s)	593
BmrFI	CCNGG	2 cut(s)	201, 659
BmsI	GCATC	2 cut(s)	247, 644
BpmI	CTGGAG	1 cut(s)	984
BpuEI	CTTGAG	1 cut(s)	812
BpuMI	CCSGG	1 cut(s)	201
Bsa29I	ATCGAT	1 cut(s)	564
BsaI	GGTCTC	1 cut(s)	830
BsaJI	CCNNGG	1 cut(s)	553
BsaXI	ACNNNNNCTCC	2 cut(s)	407, 437
Bsc4I	CCNNNNNNNGG	4 cut(s)	476, 512, 554, 758
Bse1I	ACTGG	1 cut(s)	502
Bse3DI	GCAATG	2 cut(s)	159, 336
BseBI	CCWGG	1 cut(s)	659
BseCI	ATCGAT	1 cut(s)	564
BseDI	CCNNGG	1 cut(s)	553
BseGI	GGATG	1 cut(s)	767
BseLI	CCNNNNNNNGG	4 cut(s)	476, 512, 554, 758
BseMI	GCAATG	2 cut(s)	159, 336
BseNI	ACTGG	1 cut(s)	502
BseRI	GAGGAG	1 cut(s)	428
BseXI	GCAGC	1 cut(s)	971
BsgI	GTGCAG	1 cut(s)	723
Bsh1236I	CGCG	1 cut(s)	729
Bsh1285I	CGRYCG	1 cut(s)	226
BshFI	GGCC	1 cut(s)	158
BshVI	ATCGAT	1 cut(s)	564
BsiEI	CGRYCG	1 cut(s)	226
BsiHKAI	GWGCWC	1 cut(s)	222
BsiHKCI	CYCGRG	1 cut(s)	593
BsiSI	CCGG	3 cut(s)	201, 264, 289
BslFI	GGGAC	1 cut(s)	493
BslI	CCNNNNNNNGG	4 cut(s)	476, 512, 554, 758
BsmAI	GTCTC	2 cut(s)	431, 830
BsmBI	CGTCTC	1 cut(s)	431
BsmFI	GGGAC	1 cut(s)	493
BsnI	GGCC	1 cut(s)	158
Bso31I	GGTCTC	1 cut(s)	830
BsoBI	CYCGRG	1 cut(s)	593
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp1407I	TGTACA	1 cut(s)	675
Bsp143I	GATC	5 cut(s)	137, 223, 343, 565, 805
BspACI	CCGC	4 cut(s)	76, 119, 197, 538
BspANI	GGCC	1 cut(s)	158
BspDI	ATCGAT	1 cut(s)	564
BspFNI	CGCG	1 cut(s)	729
BspPI	GGATC	2 cut(s)	132, 813
BspTNI	GGTCTC	1 cut(s)	830
BsrDI	GCAATG	2 cut(s)	159, 336
BsrGI	TGTACA	1 cut(s)	675
BsrI	ACTGG	1 cut(s)	502
BssECI	CCNNGG	1 cut(s)	553
BssMI	GATC	5 cut(s)	137, 223, 343, 565, 805
BssT1I	CCWWGG	1 cut(s)	553
Bst2UI	CCWGG	1 cut(s)	659
Bst4CI	ACNGT	1 cut(s)	238
Bst6I	CTCTTC	1 cut(s)	708
BstAUI	TGTACA	1 cut(s)	675
BstC8I	GCNNGC	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	767
BstFNI	CGCG	1 cut(s)	729
BstHHI	GCGC	1 cut(s)	653
BstKTI	GATC	5 cut(s)	140, 226, 346, 568, 808
BstMAI	GTCTC	2 cut(s)	431, 830
BstMBI	GATC	5 cut(s)	137, 223, 343, 565, 805
BstMCI	CGRYCG	1 cut(s)	226
BstMWI	GCNNNNNNNGC	4 cut(s)	239, 659, 716, 788
BstNI	CCWGG	1 cut(s)	659
BstNSI	RCATGY	1 cut(s)	938
BstSCI	CCNGG	2 cut(s)	199, 657
BstUI	CGCG	1 cut(s)	729
BstV1I	GCAGC	1 cut(s)	971
BstX2I	RGATCY	1 cut(s)	805
BstYI	RGATCY	1 cut(s)	805
Bsu15I	ATCGAT	1 cut(s)	564
BsuRI	GGCC	1 cut(s)	158
BsuTUI	ATCGAT	1 cut(s)	564
BtsCI	GGATG	1 cut(s)	767
BtsIMutI	CAGTG	3 cut(s)	495, 706, 848
Cac8I	GCNNGC	1 cut(s)	108
CfoI	GCGC	1 cut(s)	653
ClaI	ATCGAT	1 cut(s)	564
CseI	GACGC	1 cut(s)	718
Csp6I	GTAC	2 cut(s)	516, 676
CviAII	CATG	2 cut(s)	398, 935
CviQI	GTAC	2 cut(s)	516, 676
DpnI	GATC	5 cut(s)	139, 225, 345, 567, 807
DpnII	GATC	5 cut(s)	137, 223, 343, 565, 805
Eam1104I	CTCTTC	1 cut(s)	708
EarI	CTCTTC	1 cut(s)	708
Ecl136II	GAGCTC	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	553
Eco24I	GRGCYC	1 cut(s)	222
Eco31I	GGTCTC	1 cut(s)	830
Eco53kI	GAGCTC	1 cut(s)	220
Eco88I	CYCGRG	1 cut(s)	593
EcoICRI	GAGCTC	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	657
EcoT14I	CCWWGG	1 cut(s)	553
EcoT38I	GRGCYC	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	553
Esp3I	CGTCTC	1 cut(s)	431
FaeI	CATG	2 cut(s)	401, 938
FaqI	GGGAC	1 cut(s)	493
FatI	CATG	2 cut(s)	397, 934
FauI	CCCGC	3 cut(s)	126, 204, 531
FauNDI	CATATG	1 cut(s)	363
Fnu4HI	GCNGC	1 cut(s)	960
FokI	GGATG	1 cut(s)	774
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	1 cut(s)	960
FspI	TGCGCA	1 cut(s)	652
GlaI	GCGC	1 cut(s)	652
GluI	GCNGC	1 cut(s)	960
GsuI	CTGGAG	1 cut(s)	984
HaeIII	GGCC	1 cut(s)	158
HapII	CCGG	3 cut(s)	201, 264, 289
HgaI	GACGC	1 cut(s)	718
HhaI	GCGC	1 cut(s)	653
Hin1II	CATG	2 cut(s)	401, 938
Hin6I	GCGC	1 cut(s)	651
HinP1I	GCGC	1 cut(s)	651
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HindIII	AAGCTT	1 cut(s)	666
HinfI	GANTC	4 cut(s)	13, 320, 818, 976
HpaII	CCGG	3 cut(s)	201, 264, 289
HphI	GGTGA	1 cut(s)	971
Hpy166II	GTNNAC	3 cut(s)	208, 678, 689
Hpy188I	TCNGA	3 cut(s)	169, 279, 734
Hpy188III	TCNNGA	1 cut(s)	308
Hpy8I	GTNNAC	3 cut(s)	208, 678, 689
Hpy99I	CGWCG	3 cut(s)	152, 188, 242
HpyAV	CCTTC	5 cut(s)	54, 402, 600, 794, 860
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	1 cut(s)	440
HpyCH4V	TGCA	5 cut(s)	341, 432, 446, 704, 938
HpyF10VI	GCNNNNNNNGC	4 cut(s)	239, 659, 716, 788
HpySE526I	ACGT	1 cut(s)	440
Hsp92II	CATG	2 cut(s)	401, 938
HspAI	GCGC	1 cut(s)	651
Kzo9I	GATC	5 cut(s)	137, 223, 343, 565, 805
Lsp1109I	GCAGC	1 cut(s)	971
LweI	GCATC	2 cut(s)	247, 644
MaeII	ACGT	1 cut(s)	440
MaeIII	GTNAC	2 cut(s)	331, 764
MalI	GATC	5 cut(s)	139, 225, 345, 567, 807
MboI	GATC	5 cut(s)	137, 223, 343, 565, 805
MboII	GAAGA	2 cut(s)	329, 725
MflI	RGATCY	1 cut(s)	805
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	5 cut(s)	55, 296, 385, 928, 994
MlyI	GAGTC	1 cut(s)	827
MmeI	TCCRAC	2 cut(s)	84, 92
MroXI	GAANNNNTTC	2 cut(s)	273, 284
MseI	TTAA	3 cut(s)	578, 744, 948
MslI	CAYNNNNRTG	2 cut(s)	646, 1003
MspA1I	CMGCKG	2 cut(s)	129, 962
MspI	CCGG	3 cut(s)	201, 264, 289
MspR9I	CCNGG	2 cut(s)	201, 659
MvaI	CCWGG	1 cut(s)	659
MvnI	CGCG	1 cut(s)	729
MwoI	GCNNNNNNNGC	4 cut(s)	239, 659, 716, 788
NciI	CCSGG	1 cut(s)	201
NdeI	CATATG	1 cut(s)	363
NdeII	GATC	5 cut(s)	137, 223, 343, 565, 805
NlaIII	CATG	2 cut(s)	401, 938
NmuCI	GTSAC	2 cut(s)	331, 764
NsbI	TGCGCA	1 cut(s)	652
NspI	RCATGY	1 cut(s)	938
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PdmI	GAANNNNTTC	2 cut(s)	273, 284
PfeI	GAWTC	3 cut(s)	13, 320, 976
PflMI	CCANNNNNTGG	2 cut(s)	554, 758
PkrI	GCNGC	1 cut(s)	961
Ple19I	CGATCG	1 cut(s)	226
PleI	GAGTC	1 cut(s)	826
PpsI	GAGTC	1 cut(s)	826
Psp124BI	GAGCTC	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	657
PspGI	CCWGG	1 cut(s)	657
PsuI	RGATCY	1 cut(s)	805
PvuI	CGATCG	1 cut(s)	226
PvuII	CAGCTG	2 cut(s)	129, 962
RsaI	GTAC	2 cut(s)	517, 677
RsaNI	GTAC	2 cut(s)	516, 676
RseI	CAYNNNNRTG	2 cut(s)	646, 1003
SacI	GAGCTC	1 cut(s)	222
SaqAI	TTAA	3 cut(s)	578, 744, 948
SatI	GCNGC	1 cut(s)	960
Sau3AI	GATC	5 cut(s)	137, 223, 343, 565, 805
SchI	GAGTC	1 cut(s)	827
ScrFI	CCNGG	2 cut(s)	201, 659
SduI	GDGCHC	1 cut(s)	222
SfaNI	GCATC	2 cut(s)	247, 644
SmiMI	CAYNNNNRTG	2 cut(s)	646, 1003
SmlI	CTYRAG	1 cut(s)	827
SmoI	CTYRAG	1 cut(s)	827
Sse9I	AATT	5 cut(s)	55, 296, 385, 928, 994
SsiI	CCGC	4 cut(s)	76, 119, 197, 538
SstI	GAGCTC	1 cut(s)	222
StyD4I	CCNGG	2 cut(s)	199, 657
StyI	CCWWGG	1 cut(s)	553
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	1 cut(s)	443
TaqI	TCGA	4 cut(s)	222, 300, 309, 564
TasI	AATT	5 cut(s)	55, 296, 385, 928, 994
TatI	WGTACW	1 cut(s)	675
TfiI	GAWTC	3 cut(s)	13, 320, 976
Tru1I	TTAA	3 cut(s)	578, 744, 948
Tru9I	TTAA	3 cut(s)	578, 744, 948
TscAI	CASTG	3 cut(s)	502, 706, 855
TseFI	GTSAC	2 cut(s)	331, 764
TseI	GCWGC	1 cut(s)	959
Tsp45I	GTSAC	2 cut(s)	331, 764
TspDTI	ATGAA	1 cut(s)	987
TspRI	CASTG	3 cut(s)	502, 706, 855
Van91I	CCANNNNNTGG	2 cut(s)	554, 758
XapI	RAATTY	3 cut(s)	296, 385, 994
XceI	RCATGY	1 cut(s)	938
XmnI	GAANNNNTTC	2 cut(s)	273, 284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.