Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010954

Physical Location & Seq

Genomic Coordinates Forward (+)

22000127 .. 22009522

Gene Structure 9396 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23853

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGCTCTCCCAGATTCCCAAATCCCTCTCCTTCTTCCACAACCCTTCCATTCCCATTCCCATTCCCAATTCCAACTCTCCAACTCTCCGCTTCTCAACTCCCAATCCCTTACTCTCGCTCGCTCATCTCCCGCCTTTCAGCTGTTGCCGACCCACACTCGTCGCAATGGCCTCCGCCTCCGCCTCCGACCTCCCTAACGCCGTCGTTCCCCTCCCGCCCGGCGTTGACGAGAATGAGCTCGATCGCTTTGCCACCATCGCCAATAAAGTCGCCGATGCCTCCGGCGAAGTTATTCGGAAATATTTCCGGCAGAAATTCGATATTCTCGATAAAGAAGATTCCAGCCCTGTGACCATTGCGGATCAAACAGCAGAGGAACATATGATTTCAGTTATATCAGAGAATTTTCCTTCTCATGCTGTTTACGGAGAGGAGAATGGGTGGAGGTGCAAAGAGACATATGCAGACTATGTTTGGGTATTAGACCCTATTGATGGGACAAAAAGTTTTATCACTGGAAAACCCGTGTTTGGTACTCTTATTTCTCTGCTACTGCGGGGCAAACCAATCCTTGGTATAATCGATCAGCCTATTTTAAGAGAGAGATGGCTCGGGGTAAGTGGAAGGAAAACTACATTGAATGGAAAAGTAGTGTCGACACGCACATGCGCAAACCTGGCACAAGCTTATCTGTACACTACAAGTCCACATCTATTCAGTGCAGAAGCAGAAGAGGCATTTATTCGCGTCAGAAATAAGGTTAAAGTGCCATTGTATGGATGTGACTGCTATGCTTATGCCCTTCTGGCTTCTGGTTATGTGGATCTTGTTGTTGAGTCTGGTCTCAAGCCATACGATTTTCTTTCACTGATACCTGTGATAGAAGGTTCTGGGGGTGTCATAACTGATTGGAAAGGACATCAGCTTTTGTGGGAGGCTTCTGCCAATTCACATGCAACAAGTTTTAATGTAGTGGCAGCTGGAGATAAACAGATTCACCAACAAGCTTTAGATTCATTACAATGGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004401 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0052745 GO:0052803 GO:0052834 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00053 ko00340 ko00562 ko01100 ko01110 ko01230 ko04070 map00053 map00340 map00562 map01100 map01110 map01230 map04070

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

343

Amino Acids

37.62

Weight (kDa)

5.77

Isoelectric Point (pI)

36.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inositol_P	PF00459	80 - 321	7.9e-57	Inositol monophosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39120 AT4G39120
fragaria_vesca	FvH4_2g09630 FvH4_2g09630 FvH4_2g09630 FvH4_2g09630
malus_domestica	MD05G1061200.v1.1 MD10G1068900.v1.1
prunus_persica	Prupe.8G090900_v2.0.a1
pyrus_communis	pycom05g05220 pycom10g05500
rosa_chinensis	RchiOBHm_Chr6g0265981
rosa_laevigata	RLG00000014141
rosa_multiflora	Rmu_sc0030533.1_g000003
rosa_roxburghii	Rroxscaffold_7G00202170
rosa_rugosa	Rorug06G0022100
rosa_samantha	Rh6AG143300 Rh6BG143600 Rh6CG140300
rosa_wichuraiana	Rw6G012390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	670
AccB7I	CCANNNNNTGG	2 cut(s)	572, 776
AccI	GTMKAC	1 cut(s)	656
AccII	CGCG	1 cut(s)	747
AciI	CCGC	7 cut(s)	88, 131, 174, 180, 215, 359, 556
AclWI	GGATC	2 cut(s)	369, 831
AcsI	RAATTY	2 cut(s)	314, 403
AfaI	GTAC	2 cut(s)	535, 695
AfiI	CCNNNNNNNGG	4 cut(s)	494, 530, 572, 776
AgsI	TTSAA	1 cut(s)	640
AjnI	CCWGG	1 cut(s)	675
AluBI	AGCT	6 cut(s)	141, 238, 686, 925, 980, 1007
AluI	AGCT	6 cut(s)	141, 238, 686, 925, 980, 1007
Alw21I	GWGCWC	1 cut(s)	240
Alw26I	GTCTC	2 cut(s)	449, 848
AlwI	GGATC	2 cut(s)	369, 831
Ama87I	CYCGRG	1 cut(s)	611
AoxI	GGCC	1 cut(s)	168
ApeKI	GCWGC	1 cut(s)	977
ApoI	RAATTY	2 cut(s)	314, 403
Asp700I	GAANNNNTTC	2 cut(s)	291, 302
AspLEI	GCGC	1 cut(s)	671
AsuC2I	CCSGG	1 cut(s)	219
AsuHPI	GGTGA	1 cut(s)	989
AvaI	CYCGRG	1 cut(s)	611
BanII	GRGCYC	1 cut(s)	240
BarI	GAAGNNNNNNTAC	2 cut(s)	616, 648
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	1 cut(s)	989
BccI	CCATC	3 cut(s)	263, 488, 600
BceAI	ACGGC	1 cut(s)	185
BcgI	CGANNNNNNTGC	2 cut(s)	230, 264
BciT130I	CCWGG	1 cut(s)	677
BcnI	CCSGG	1 cut(s)	219
BcoDI	GTCTC	2 cut(s)	449, 848
BglI	GCCNNNNNGGC	1 cut(s)	806
BisI	GCNGC	1 cut(s)	978
BlsI	GCNGC	1 cut(s)	979
Bme1390I	CCNGG	2 cut(s)	219, 677
BmeT110I	CYCGRG	1 cut(s)	611
BmrFI	CCNGG	2 cut(s)	219, 677
BmsI	GCATC	1 cut(s)	265
BpmI	CTGGAG	1 cut(s)	1002
BpuEI	CTTGAG	1 cut(s)	830
BpuMI	CCSGG	1 cut(s)	219
Bsa29I	ATCGAT	1 cut(s)	582
BsaI	GGTCTC	1 cut(s)	848
BsaJI	CCNNGG	1 cut(s)	571
BsaXI	ACNNNNNCTCC	2 cut(s)	425, 455
Bsc4I	CCNNNNNNNGG	4 cut(s)	494, 530, 572, 776
Bse1I	ACTGG	1 cut(s)	520
Bse3DI	GCAATG	2 cut(s)	171, 354
BseBI	CCWGG	1 cut(s)	677
BseCI	ATCGAT	1 cut(s)	582
BseDI	CCNNGG	1 cut(s)	571
BseGI	GGATG	1 cut(s)	785
BseLI	CCNNNNNNNGG	4 cut(s)	494, 530, 572, 776
BseMI	GCAATG	2 cut(s)	171, 354
BseNI	ACTGG	1 cut(s)	520
BseRI	GAGGAG	1 cut(s)	446
BseXI	GCAGC	1 cut(s)	989
BsgI	GTGCAG	1 cut(s)	741
Bsh1236I	CGCG	1 cut(s)	747
Bsh1285I	CGRYCG	1 cut(s)	244
BshFI	GGCC	1 cut(s)	170
BshVI	ATCGAT	1 cut(s)	582
BsiEI	CGRYCG	1 cut(s)	244
BsiHKAI	GWGCWC	1 cut(s)	240
BsiHKCI	CYCGRG	1 cut(s)	611
BsiSI	CCGG	3 cut(s)	219, 282, 307
BslFI	GGGAC	1 cut(s)	511
BslI	CCNNNNNNNGG	4 cut(s)	494, 530, 572, 776
BsmAI	GTCTC	2 cut(s)	449, 848
BsmFI	GGGAC	1 cut(s)	511
BsnI	GGCC	1 cut(s)	170
Bso31I	GGTCTC	1 cut(s)	848
BsoBI	CYCGRG	1 cut(s)	611
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp1407I	TGTACA	1 cut(s)	693
Bsp143I	GATC	4 cut(s)	241, 361, 583, 823
BspACI	CCGC	7 cut(s)	88, 131, 174, 180, 215, 359, 556
BspANI	GGCC	1 cut(s)	170
BspDI	ATCGAT	1 cut(s)	582
BspFNI	CGCG	1 cut(s)	747
BspPI	GGATC	2 cut(s)	369, 831
BspTNI	GGTCTC	1 cut(s)	848
BsrDI	GCAATG	2 cut(s)	171, 354
BsrGI	TGTACA	1 cut(s)	693
BsrI	ACTGG	1 cut(s)	520
BssECI	CCNNGG	1 cut(s)	571
BssMI	GATC	4 cut(s)	241, 361, 583, 823
BssT1I	CCWWGG	1 cut(s)	571
Bst2UI	CCWGG	1 cut(s)	677
Bst6I	CTCTTC	1 cut(s)	726
BstAUI	TGTACA	1 cut(s)	693
BstC8I	GCNNGC	1 cut(s)	120
BstF5I	GGATG	1 cut(s)	785
BstFNI	CGCG	1 cut(s)	747
BstHHI	GCGC	1 cut(s)	671
BstKTI	GATC	4 cut(s)	244, 364, 586, 826
BstMAI	GTCTC	2 cut(s)	449, 848
BstMBI	GATC	4 cut(s)	241, 361, 583, 823
BstMCI	CGRYCG	1 cut(s)	244
BstMWI	GCNNNNNNNGC	4 cut(s)	257, 677, 734, 806
BstNI	CCWGG	1 cut(s)	677
BstNSI	RCATGY	2 cut(s)	669, 956
BstSCI	CCNGG	2 cut(s)	217, 675
BstUI	CGCG	1 cut(s)	747
BstV1I	GCAGC	1 cut(s)	989
BstX2I	RGATCY	1 cut(s)	823
BstYI	RGATCY	1 cut(s)	823
Bsu15I	ATCGAT	1 cut(s)	582
BsuRI	GGCC	1 cut(s)	170
BsuTUI	ATCGAT	1 cut(s)	582
BtgZI	GCGATG	1 cut(s)	241
BtsCI	GGATG	1 cut(s)	785
BtsIMutI	CAGTG	3 cut(s)	513, 724, 866
Cac8I	GCNNGC	1 cut(s)	120
CfoI	GCGC	1 cut(s)	671
ClaI	ATCGAT	1 cut(s)	582
CseI	GACGC	1 cut(s)	736
Csp6I	GTAC	2 cut(s)	534, 694
CviAII	CATG	3 cut(s)	416, 666, 953
CviQI	GTAC	2 cut(s)	534, 694
DpnI	GATC	4 cut(s)	243, 363, 585, 825
DpnII	GATC	4 cut(s)	241, 361, 583, 823
Eam1104I	CTCTTC	1 cut(s)	726
EarI	CTCTTC	1 cut(s)	726
EciI	GGCGGA	2 cut(s)	163, 169
Ecl136II	GAGCTC	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	571
Eco24I	GRGCYC	1 cut(s)	240
Eco31I	GGTCTC	1 cut(s)	848
Eco53kI	GAGCTC	1 cut(s)	238
Eco88I	CYCGRG	1 cut(s)	611
EcoICRI	GAGCTC	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	675
EcoT14I	CCWWGG	1 cut(s)	571
EcoT38I	GRGCYC	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	571
FaeI	CATG	3 cut(s)	419, 669, 956
FaqI	GGGAC	1 cut(s)	511
FatI	CATG	3 cut(s)	415, 665, 952
FauI	CCCGC	3 cut(s)	138, 222, 549
FauNDI	CATATG	2 cut(s)	381, 460
FblI	GTMKAC	1 cut(s)	656
Fnu4HI	GCNGC	1 cut(s)	978
FokI	GGATG	1 cut(s)	792
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	1 cut(s)	978
FspI	TGCGCA	1 cut(s)	670
GlaI	GCGC	1 cut(s)	670
GluI	GCNGC	1 cut(s)	978
GsuI	CTGGAG	1 cut(s)	1002
HaeIII	GGCC	1 cut(s)	170
HapII	CCGG	3 cut(s)	219, 282, 307
HgaI	GACGC	1 cut(s)	736
HhaI	GCGC	1 cut(s)	671
Hin1II	CATG	3 cut(s)	419, 669, 956
Hin6I	GCGC	1 cut(s)	669
HinP1I	GCGC	1 cut(s)	669
HincII	GTYRAC	2 cut(s)	226, 657
HindII	GTYRAC	2 cut(s)	226, 657
HindIII	AAGCTT	2 cut(s)	684, 1005
HinfI	GANTC	5 cut(s)	13, 338, 836, 994, 1013
HpaII	CCGG	3 cut(s)	219, 282, 307
HphI	GGTGA	1 cut(s)	989
Hpy166II	GTNNAC	5 cut(s)	226, 424, 657, 696, 707
Hpy188I	TCNGA	4 cut(s)	187, 297, 400, 752
Hpy188III	TCNNGA	1 cut(s)	326
Hpy8I	GTNNAC	5 cut(s)	226, 424, 657, 696, 707
Hpy99I	CGWCG	2 cut(s)	164, 206
HpyAV	CCTTC	6 cut(s)	40, 54, 420, 618, 812, 878
HpyCH4V	TGCA	4 cut(s)	450, 464, 722, 956
HpyF10VI	GCNNNNNNNGC	4 cut(s)	257, 677, 734, 806
Hsp92II	CATG	3 cut(s)	419, 669, 956
HspAI	GCGC	1 cut(s)	669
Kzo9I	GATC	4 cut(s)	241, 361, 583, 823
Lsp1109I	GCAGC	1 cut(s)	989
LweI	GCATC	1 cut(s)	265
MaeIII	GTNAC	2 cut(s)	349, 782
MalI	GATC	4 cut(s)	243, 363, 585, 825
MboI	GATC	4 cut(s)	241, 361, 583, 823
MboII	GAAGA	3 cut(s)	25, 347, 743
MflI	RGATCY	1 cut(s)	823
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	4 cut(s)	67, 314, 403, 946
MlyI	GAGTC	1 cut(s)	845
MmeI	TCCRAC	3 cut(s)	96, 104, 210
MroXI	GAANNNNTTC	2 cut(s)	291, 302
MseI	TTAA	3 cut(s)	596, 762, 966
MslI	CAYNNNNRTG	2 cut(s)	664, 1021
MspA1I	CMGCKG	2 cut(s)	141, 980
MspI	CCGG	3 cut(s)	219, 282, 307
MspR9I	CCNGG	2 cut(s)	219, 677
MvaI	CCWGG	1 cut(s)	677
MvnI	CGCG	1 cut(s)	747
MwoI	GCNNNNNNNGC	4 cut(s)	257, 677, 734, 806
NciI	CCSGG	1 cut(s)	219
NdeI	CATATG	2 cut(s)	381, 460
NdeII	GATC	4 cut(s)	241, 361, 583, 823
NlaIII	CATG	3 cut(s)	419, 669, 956
NmuCI	GTSAC	2 cut(s)	349, 782
NsbI	TGCGCA	1 cut(s)	670
NspI	RCATGY	2 cut(s)	669, 956
PcsI	WCGNNNNNNNCGW	1 cut(s)	324
PdmI	GAANNNNTTC	2 cut(s)	291, 302
PfeI	GAWTC	4 cut(s)	13, 338, 994, 1013
PflMI	CCANNNNNTGG	2 cut(s)	572, 776
PkrI	GCNGC	1 cut(s)	979
Ple19I	CGATCG	1 cut(s)	244
PleI	GAGTC	1 cut(s)	844
PpsI	GAGTC	1 cut(s)	844
Psp124BI	GAGCTC	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	675
PspGI	CCWGG	1 cut(s)	675
PsuI	RGATCY	1 cut(s)	823
PvuI	CGATCG	1 cut(s)	244
PvuII	CAGCTG	2 cut(s)	141, 980
RsaI	GTAC	2 cut(s)	535, 695
RsaNI	GTAC	2 cut(s)	534, 694
RseI	CAYNNNNRTG	2 cut(s)	664, 1021
SacI	GAGCTC	1 cut(s)	240
SalI	GTCGAC	1 cut(s)	655
SaqAI	TTAA	3 cut(s)	596, 762, 966
SatI	GCNGC	1 cut(s)	978
Sau3AI	GATC	4 cut(s)	241, 361, 583, 823
SchI	GAGTC	1 cut(s)	845
ScrFI	CCNGG	2 cut(s)	219, 677
SduI	GDGCHC	1 cut(s)	240
SfaNI	GCATC	1 cut(s)	265
SmiMI	CAYNNNNRTG	2 cut(s)	664, 1021
SmlI	CTYRAG	1 cut(s)	845
SmoI	CTYRAG	1 cut(s)	845
Sse9I	AATT	4 cut(s)	67, 314, 403, 946
SsiI	CCGC	7 cut(s)	88, 131, 174, 180, 215, 359, 556
SspI	AATATT	1 cut(s)	302
SstI	GAGCTC	1 cut(s)	240
StyD4I	CCNGG	2 cut(s)	217, 675
StyI	CCWWGG	1 cut(s)	571
TaqI	TCGA	5 cut(s)	240, 318, 327, 582, 656
TasI	AATT	4 cut(s)	67, 314, 403, 946
TatI	WGTACW	1 cut(s)	693
TfiI	GAWTC	4 cut(s)	13, 338, 994, 1013
Tru1I	TTAA	3 cut(s)	596, 762, 966
Tru9I	TTAA	3 cut(s)	596, 762, 966
TscAI	CASTG	3 cut(s)	520, 724, 873
TseFI	GTSAC	2 cut(s)	349, 782
TseI	GCWGC	1 cut(s)	977
Tsp45I	GTSAC	2 cut(s)	349, 782
TspDTI	ATGAA	1 cut(s)	1005
TspGWI	ACGGA	1 cut(s)	441
TspRI	CASTG	3 cut(s)	520, 724, 873
Van91I	CCANNNNNTGG	2 cut(s)	572, 776
XapI	RAATTY	2 cut(s)	314, 403
XceI	RCATGY	2 cut(s)	669, 956
XmiI	GTMKAC	1 cut(s)	656
XmnI	GAANNNNTTC	2 cut(s)	291, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.