Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010954

Physical Location & Seq

Genomic Coordinates Forward (+)

8551138 .. 8555680

Gene Structure 4543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g09630.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGCTCTCCCAGATTCCGAAACCCCTCTCCTTCTTCCCCAATCCTTCCATTCCCATTCCCAACCCCAACTCTCTATCTCTCCGCTTCTCAACTCCCAATCCCTCACTCTCGCTCACTGACCTTCCCCTCCGCCGCCGTCGATCCCCATTCCTCTCTATGACCTCCGCCCCCGACCGCCCAGACGCCGTCGTTCCCGGCGTCTACGATATTGAGCTCGATCGCTTCGCCGTCGTTGCCAATAAGGTCGCCGACGCCTCCGGCGAAGTCATTCGGAAATATTTCCGGCAGAAATTCGATATTCTCGATAAAGCAGATTCAAGCCCTGTGACGATTGCGGATCAAACAGCAGAGGAGCATATGATTTCAGTTATATCAGAGAATTTTCCTTCTCATGCTGTTTATGGAGAGGAGAATGGATGGAGGTGCAAAGAGAAATCTGCAGACTATGTTTGGGTATTAGACCCTATAGACGGGACAAAAAGTTTTATCACCGGAAAACCCGTGTTTGGTACTCTTATTTCTCTGCTACTGCGGGGAAAACCAATCCTTGGTATAATTGATCAGCCTATTTTAAGAGAAAGATGGCTTGGGTTAAGTGGAAGACAAACTACATTAAATGGAAAACTAGTGTCGACTCGCACTTGCGCAAACCTGGCACAGGCTTATCTGTACACTACTAGTCCACATCTGTTCAGTGCAGAAGCAGAAGAGGCATTTATTCGCGTCAGAAATAAGGTTAAAGTGCCATTGTATGGATGTGACTGCTATGCTTATGCCCTTCTGGCTTCTGGTTATGTGGATCTTGTTGTTGAGTCTGGTCTCAAGCCATACGATTTTCTTTCATTGATACCTGTGATAGAAGGTGCTGGGGGTGTCATAACTGATTGGAAAGGACATCAGCTTTTTTGGGAAGCTTCTGCCAATTCACATGCAACAAGTTTTAATGTAGTGGCAGCTGGAGATAAACAGATTCACCAACAAGCTCTAAATTCATTACAATGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004401 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0052745 GO:0052803 GO:0052834 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00053 ko00340 ko00562 ko01100 ko01110 ko01230 ko04070 map00053 map00340 map00562 map01100 map01110 map01230 map04070

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

336

Amino Acids

37.04

Weight (kDa)

6.33

Isoelectric Point (pI)

40.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inositol_P	PF00459	72 - 275	1.1e-46	Inositol monophosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39120 AT4G39120
fragaria_vesca	FvH4_2g09630 FvH4_2g09630 FvH4_2g09630 FvH4_2g09630
malus_domestica	MD05G1061200.v1.1 MD10G1068900.v1.1
prunus_persica	Prupe.8G090900_v2.0.a1
pyrus_communis	pycom05g05220 pycom10g05500
rosa_chinensis	RchiOBHm_Chr6g0265981
rosa_laevigata	RLG00000014141
rosa_multiflora	Rmu_sc0030533.1_g000003
rosa_roxburghii	Rroxscaffold_7G00202170
rosa_rugosa	Rorug06G0022100
rosa_samantha	Rh6AG143300 Rh6BG143600 Rh6CG140300
rosa_wichuraiana	Rw6G012390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	646
AccB7I	CCANNNNNTGG	2 cut(s)	548, 752
AccI	GTMKAC	2 cut(s)	201, 632
AccII	CGCG	1 cut(s)	723
AciI	CCGC	7 cut(s)	82, 130, 133, 165, 175, 335, 532
AclWI	GGATC	3 cut(s)	135, 345, 807
AcsI	RAATTY	3 cut(s)	290, 379, 988
AcyI	GRCGYC	3 cut(s)	183, 198, 252
AfaI	GTAC	2 cut(s)	511, 671
AfiI	CCNNNNNNNGG	5 cut(s)	470, 506, 548, 658, 752
AgsI	TTSAA	1 cut(s)	318
AhlI	ACTAGT	2 cut(s)	625, 677
AjnI	CCWGG	1 cut(s)	651
AjuI	GAANNNNNNNTTGG	2 cut(s)	570, 602
AluBI	AGCT	5 cut(s)	214, 901, 914, 956, 983
AluI	AGCT	5 cut(s)	214, 901, 914, 956, 983
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	1 cut(s)	824
AlwI	GGATC	3 cut(s)	135, 345, 807
ApeKI	GCWGC	1 cut(s)	953
ApoI	RAATTY	3 cut(s)	290, 379, 988
Asp700I	GAANNNNTTC	2 cut(s)	267, 278
AspLEI	GCGC	1 cut(s)	647
AsuC2I	CCSGG	1 cut(s)	195
AsuHPI	GGTGA	2 cut(s)	481, 965
BanII	GRGCYC	1 cut(s)	216
BarI	GAAGNNNNNNTAC	2 cut(s)	592, 624
BbsI	GAAGAC	1 cut(s)	607
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	965
BccI	CCATC	2 cut(s)	411, 576
BceAI	ACGGC	3 cut(s)	120, 170, 212
BciT130I	CCWGG	1 cut(s)	653
BclI	TGATCA	1 cut(s)	559
BcnI	CCSGG	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	824
BcuI	ACTAGT	2 cut(s)	625, 677
BfaI	CTAG	2 cut(s)	626, 678
BfmI	CTRYAG	2 cut(s)	438, 465
BglI	GCCNNNNNGGC	1 cut(s)	782
BisI	GCNGC	2 cut(s)	133, 954
BlsI	GCNGC	2 cut(s)	134, 955
Bme1390I	CCNGG	2 cut(s)	195, 653
BmrFI	CCNGG	2 cut(s)	195, 653
BpiI	GAAGAC	1 cut(s)	607
BpmI	CTGGAG	1 cut(s)	978
BpuEI	CTTGAG	1 cut(s)	806
BpuMI	CCSGG	1 cut(s)	195
BsaHI	GRCGYC	3 cut(s)	183, 198, 252
BsaI	GGTCTC	1 cut(s)	824
BsaJI	CCNNGG	1 cut(s)	547
BsaWI	WCCGGW	1 cut(s)	491
Bsc4I	CCNNNNNNNGG	5 cut(s)	470, 506, 548, 658, 752
BseBI	CCWGG	1 cut(s)	653
BseDI	CCNNGG	1 cut(s)	547
BseGI	GGATG	2 cut(s)	422, 761
BseLI	CCNNNNNNNGG	5 cut(s)	470, 506, 548, 658, 752
BseRI	GAGGAG	2 cut(s)	365, 422
BseXI	GCAGC	1 cut(s)	965
BseYI	CCCAGC	1 cut(s)	866
BsgI	GTGCAG	1 cut(s)	717
Bsh1236I	CGCG	1 cut(s)	723
Bsh1285I	CGRYCG	2 cut(s)	175, 220
BsiEI	CGRYCG	2 cut(s)	175, 220
BsiHKAI	GWGCWC	1 cut(s)	216
BsiSI	CCGG	4 cut(s)	195, 258, 283, 492
BslFI	GGGAC	1 cut(s)	487
BslI	CCNNNNNNNGG	5 cut(s)	470, 506, 548, 658, 752
BsmAI	GTCTC	1 cut(s)	824
BsmFI	GGGAC	1 cut(s)	487
Bso31I	GGTCTC	1 cut(s)	824
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp1407I	TGTACA	1 cut(s)	669
Bsp143I	GATC	5 cut(s)	140, 217, 337, 559, 799
BspACI	CCGC	7 cut(s)	82, 130, 133, 165, 175, 335, 532
BspFNI	CGCG	1 cut(s)	723
BspMAI	CTGCAG	1 cut(s)	442
BspPI	GGATC	3 cut(s)	135, 345, 807
BspTNI	GGTCTC	1 cut(s)	824
BsrGI	TGTACA	1 cut(s)	669
BssECI	CCNNGG	1 cut(s)	547
BssMI	GATC	5 cut(s)	140, 217, 337, 559, 799
BssNI	GRCGYC	3 cut(s)	183, 198, 252
BssT1I	CCWWGG	1 cut(s)	547
Bst2UI	CCWGG	1 cut(s)	653
Bst6I	CTCTTC	1 cut(s)	702
BstACI	GRCGYC	3 cut(s)	183, 198, 252
BstAUI	TGTACA	1 cut(s)	669
BstENI	CCTNNNNNAGG	1 cut(s)	656
BstF5I	GGATG	2 cut(s)	422, 761
BstFNI	CGCG	1 cut(s)	723
BstHHI	GCGC	1 cut(s)	647
BstKTI	GATC	5 cut(s)	143, 220, 340, 562, 802
BstMAI	GTCTC	1 cut(s)	824
BstMBI	GATC	5 cut(s)	140, 217, 337, 559, 799
BstMCI	CGRYCG	2 cut(s)	175, 220
BstMWI	GCNNNNNNNGC	4 cut(s)	233, 653, 710, 782
BstNI	CCWGG	1 cut(s)	653
BstNSI	RCATGY	1 cut(s)	932
BstSCI	CCNGG	2 cut(s)	193, 651
BstSFI	CTRYAG	2 cut(s)	438, 465
BstUI	CGCG	1 cut(s)	723
BstV1I	GCAGC	1 cut(s)	965
BstV2I	GAAGAC	1 cut(s)	607
BstX2I	RGATCY	1 cut(s)	799
BstYI	RGATCY	1 cut(s)	799
BtsCI	GGATG	2 cut(s)	422, 761
BtsIMutI	CAGTG	2 cut(s)	114, 700
CfoI	GCGC	1 cut(s)	647
CseI	GACGC	4 cut(s)	187, 191, 260, 712
Csp6I	GTAC	2 cut(s)	510, 670
CviAII	CATG	2 cut(s)	392, 929
CviQI	GTAC	2 cut(s)	510, 670
DpnI	GATC	5 cut(s)	142, 219, 339, 561, 801
DpnII	GATC	5 cut(s)	140, 217, 337, 559, 799
Eam1104I	CTCTTC	1 cut(s)	702
EarI	CTCTTC	1 cut(s)	702
EciI	GGCGGA	2 cut(s)	119, 154
Ecl136II	GAGCTC	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	547
Eco24I	GRGCYC	1 cut(s)	216
Eco31I	GGTCTC	1 cut(s)	824
Eco53kI	GAGCTC	1 cut(s)	214
EcoICRI	GAGCTC	1 cut(s)	214
EcoNI	CCTNNNNNAGG	1 cut(s)	656
EcoRII	CCWGG	1 cut(s)	651
EcoT14I	CCWWGG	1 cut(s)	547
EcoT38I	GRGCYC	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	547
FaeI	CATG	2 cut(s)	395, 932
FaqI	GGGAC	1 cut(s)	487
FatI	CATG	2 cut(s)	391, 928
FauI	CCCGC	1 cut(s)	525
FauNDI	CATATG	1 cut(s)	357
FbaI	TGATCA	1 cut(s)	559
FblI	GTMKAC	2 cut(s)	201, 632
Fnu4HI	GCNGC	2 cut(s)	133, 954
FokI	GGATG	2 cut(s)	429, 768
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	2 cut(s)	133, 954
FspBI	CTAG	2 cut(s)	626, 678
FspI	TGCGCA	1 cut(s)	646
GlaI	GCGC	1 cut(s)	646
GluI	GCNGC	2 cut(s)	133, 954
GsaI	CCCAGC	1 cut(s)	870
GsuI	CTGGAG	1 cut(s)	978
HapII	CCGG	4 cut(s)	195, 258, 283, 492
HgaI	GACGC	4 cut(s)	187, 191, 260, 712
HhaI	GCGC	1 cut(s)	647
Hin1I	GRCGYC	3 cut(s)	183, 198, 252
Hin1II	CATG	2 cut(s)	395, 932
Hin6I	GCGC	1 cut(s)	645
HinP1I	GCGC	1 cut(s)	645
HincII	GTYRAC	1 cut(s)	633
HindII	GTYRAC	1 cut(s)	633
HindIII	AAGCTT	1 cut(s)	912
HinfI	GANTC	5 cut(s)	13, 314, 634, 812, 970
HpaII	CCGG	4 cut(s)	195, 258, 283, 492
HphI	GGTGA	2 cut(s)	481, 965
Hpy166II	GTNNAC	4 cut(s)	202, 633, 672, 683
Hpy188I	TCNGA	4 cut(s)	18, 273, 376, 728
Hpy188III	TCNNGA	1 cut(s)	302
Hpy8I	GTNNAC	4 cut(s)	202, 633, 672, 683
Hpy99I	CGWCG	4 cut(s)	141, 191, 233, 254
HpyAV	CCTTC	6 cut(s)	40, 54, 131, 396, 788, 854
HpyCH4V	TGCA	4 cut(s)	426, 440, 698, 932
HpyF10VI	GCNNNNNNNGC	4 cut(s)	233, 653, 710, 782
Hsp92I	GRCGYC	3 cut(s)	183, 198, 252
Hsp92II	CATG	2 cut(s)	395, 932
HspAI	GCGC	1 cut(s)	645
Ksp22I	TGATCA	1 cut(s)	559
Kzo9I	GATC	5 cut(s)	140, 217, 337, 559, 799
LmnI	GCTCC	1 cut(s)	352
Lsp1109I	GCAGC	1 cut(s)	965
MaeI	CTAG	2 cut(s)	626, 678
MaeIII	GTNAC	2 cut(s)	325, 758
MalI	GATC	5 cut(s)	142, 219, 339, 561, 801
MboI	GATC	5 cut(s)	140, 217, 337, 559, 799
MboII	GAAGA	3 cut(s)	25, 612, 719
MflI	RGATCY	1 cut(s)	799
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	5 cut(s)	290, 379, 555, 922, 988
MlyI	GAGTC	2 cut(s)	628, 821
MroXI	GAANNNNTTC	2 cut(s)	267, 278
MseI	TTAA	5 cut(s)	572, 593, 614, 738, 942
MslI	CAYNNNNRTG	1 cut(s)	997
MspA1I	CMGCKG	1 cut(s)	956
MspI	CCGG	4 cut(s)	195, 258, 283, 492
MspR9I	CCNGG	2 cut(s)	195, 653
MvaI	CCWGG	1 cut(s)	653
MvnI	CGCG	1 cut(s)	723
MwoI	GCNNNNNNNGC	4 cut(s)	233, 653, 710, 782
NciI	CCSGG	1 cut(s)	195
NdeI	CATATG	1 cut(s)	357
NdeII	GATC	5 cut(s)	140, 217, 337, 559, 799
NlaIII	CATG	2 cut(s)	395, 932
NmuCI	GTSAC	2 cut(s)	325, 758
NsbI	TGCGCA	1 cut(s)	646
NspI	RCATGY	1 cut(s)	932
PcsI	WCGNNNNNNNCGW	3 cut(s)	195, 258, 300
PdmI	GAANNNNTTC	2 cut(s)	267, 278
PfeI	GAWTC	3 cut(s)	13, 314, 970
PflFI	GACNNNGTC	1 cut(s)	185
PflMI	CCANNNNNTGG	2 cut(s)	548, 752
PkrI	GCNGC	2 cut(s)	134, 955
Ple19I	CGATCG	1 cut(s)	220
PleI	GAGTC	2 cut(s)	628, 820
PpsI	GAGTC	2 cut(s)	628, 820
Psp124BI	GAGCTC	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	651
PspFI	CCCAGC	1 cut(s)	866
PspGI	CCWGG	1 cut(s)	651
PstI	CTGCAG	1 cut(s)	442
PsuI	RGATCY	1 cut(s)	799
PsyI	GACNNNGTC	1 cut(s)	185
PvuI	CGATCG	1 cut(s)	220
PvuII	CAGCTG	1 cut(s)	956
RsaI	GTAC	2 cut(s)	511, 671
RsaNI	GTAC	2 cut(s)	510, 670
RseI	CAYNNNNRTG	1 cut(s)	997
SacI	GAGCTC	1 cut(s)	216
SalI	GTCGAC	1 cut(s)	631
SaqAI	TTAA	5 cut(s)	572, 593, 614, 738, 942
SatI	GCNGC	2 cut(s)	133, 954
Sau3AI	GATC	5 cut(s)	140, 217, 337, 559, 799
SchI	GAGTC	2 cut(s)	628, 821
ScrFI	CCNGG	2 cut(s)	195, 653
SduI	GDGCHC	1 cut(s)	216
SfcI	CTRYAG	2 cut(s)	438, 465
SmiMI	CAYNNNNRTG	1 cut(s)	997
SmlI	CTYRAG	1 cut(s)	821
SmoI	CTYRAG	1 cut(s)	821
SpeI	ACTAGT	2 cut(s)	625, 677
Sse9I	AATT	5 cut(s)	290, 379, 555, 922, 988
SsiI	CCGC	7 cut(s)	82, 130, 133, 165, 175, 335, 532
SspI	AATATT	1 cut(s)	278
SspMI	CTAG	2 cut(s)	626, 678
SstI	GAGCTC	1 cut(s)	216
StyD4I	CCNGG	2 cut(s)	193, 651
StyI	CCWWGG	1 cut(s)	547
TaqI	TCGA	5 cut(s)	139, 216, 294, 303, 632
TasI	AATT	5 cut(s)	290, 379, 555, 922, 988
TatI	WGTACW	1 cut(s)	669
TauI	GCSGC	1 cut(s)	135
TfiI	GAWTC	3 cut(s)	13, 314, 970
Tru1I	TTAA	5 cut(s)	572, 593, 614, 738, 942
Tru9I	TTAA	5 cut(s)	572, 593, 614, 738, 942
TscAI	CASTG	2 cut(s)	121, 700
TseFI	GTSAC	2 cut(s)	325, 758
TseI	GCWGC	1 cut(s)	953
Tsp45I	GTSAC	2 cut(s)	325, 758
TspDTI	ATGAA	2 cut(s)	831, 981
TspRI	CASTG	2 cut(s)	121, 700
Tth111I	GACNNNGTC	1 cut(s)	185
Van91I	CCANNNNNTGG	2 cut(s)	548, 752
XagI	CCTNNNNNAGG	1 cut(s)	656
XapI	RAATTY	3 cut(s)	290, 379, 988
XceI	RCATGY	1 cut(s)	932
XmiI	GTMKAC	2 cut(s)	201, 632
XmnI	GAANNNNTTC	2 cut(s)	267, 278
XspI	CTAG	2 cut(s)	626, 678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.