Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0010954

Physical Location & Seq

Genomic Coordinates Reverse (-)

6197989 .. 6201272

Gene Structure 3284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g05220.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGCTCTCGCACATTCCCAAACCCCTCTCCTTCTCCCAAACCCCTCCGATTCCCATTCCCATTCCCAATCTCAACACTCCCGCCCTCCGTTTCTCCACTCCCAAGCCCGCACTCTCGCTCCTCCGCCTCCCTCTCTCCCGTCGTCCACTCCGTCTCGCAATGGCCTCCCTCTCCGACCTCCCTGACGCCGTCGTTTCGCTGCCGCCCAACGATTTCGAGCTTGATCGCTTCGCCCAGGTCGCCAACAAGGTTGCCGAGGCCTCCGGTGAAGTTATTCGGAAATATTTCCGGCAGAAATTTGACATTCTCGATAAAGAAGATTCCAGCCCTGTGACAATTGCAGATCAAACTGCAGAGGAAGCAATGGTTTCAATTATATTAGAGAATCTTCCTTCTCATGCTGTTTTTGGAGAAGAAAATGGGTGGAGATGCAGAGAGAAGTTTGCAGATTATGTATGGGTTTTAGATCCAATAGACGGGACAAAGAGCTTTATCACTGGAAAACCTGTGTTTGGTACTCTCATTGCTCTGCTACACCGGGGTAGACCAATTCTTGGCATAATAGATCAGCCTGTTTTAAGAGAAAGATGGGTTGGGATTAGTGGGAGGAAAACTACATTGAATGGCCAAGTAGTGTCCACACGTACTTGTGCAAATCTGGCACAGGCTTATTTGTACACTACAAGCCCACATCTATTCAGCGCAGAGGCAGAAGAGGCATTTATTCGTGTTAGAAATAAGGTGAAAGTGCCATTATACGGCTGTGACTGCTATGCTTATGCTCTGCTGGCTTCTGGTTTTGTGGATCTCGTTGTTGAGTCTGGTCTCAAGCCATACGATTTTCTTTCACTGATACCTGTGATAGAAGGTGCTGGCGGAGTCATAACTGATTGGAAGGGACATCAGCTTTATTGGGATGCTTCTCCAAATTCAAAGGCAACAAGTTATAATGTAGTGGCGGCTGGAGATAAGCAGATTCACCAGCAAGCTCTAGATTCATTACAATGGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004401 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0052745 GO:0052803 GO:0052834 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00053 ko00340 ko00562 ko01100 ko01110 ko01230 ko04070 map00053 map00340 map00562 map01100 map01110 map01230 map04070

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

338

Amino Acids

37.27

Weight (kDa)

6.61

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39120 AT4G39120
fragaria_vesca	FvH4_2g09630 FvH4_2g09630 FvH4_2g09630 FvH4_2g09630
malus_domestica	MD05G1061200.v1.1 MD10G1068900.v1.1
prunus_persica	Prupe.8G090900_v2.0.a1
pyrus_communis	pycom05g05220 pycom10g05500
rosa_chinensis	RchiOBHm_Chr6g0265981
rosa_laevigata	RLG00000014141
rosa_multiflora	Rmu_sc0030533.1_g000003
rosa_roxburghii	Rroxscaffold_7G00202170
rosa_rugosa	Rorug06G0022100
rosa_samantha	Rh6AG143300 Rh6BG143600 Rh6CG140300
rosa_wichuraiana	Rw6G012390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	948
AccB7I	CCANNNNNTGG	1 cut(s)	554
AccI	GTMKAC	1 cut(s)	544
AciI	CCGC	6 cut(s)	81, 108, 124, 203, 876, 959
AclWI	GGATC	2 cut(s)	461, 813
AcoI	YGGCCR	1 cut(s)	625
AcsI	RAATTY	2 cut(s)	296, 928
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	3 cut(s)	517, 646, 677
AfiI	CCNNNNNNNGG	4 cut(s)	476, 512, 554, 758
AflIII	ACRYGT	1 cut(s)	641
AgsI	TTSAA	3 cut(s)	372, 622, 933
AjnI	CCWGG	1 cut(s)	234
AjuI	GAANNNNNNNTTGG	2 cut(s)	576, 608
AluBI	AGCT	4 cut(s)	220, 489, 907, 989
AluI	AGCT	4 cut(s)	220, 489, 907, 989
Alw26I	GTCTC	2 cut(s)	158, 830
AlwI	GGATC	2 cut(s)	461, 813
AoxI	GGCC	3 cut(s)	162, 258, 625
ApeKI	GCWGC	1 cut(s)	199
ApoI	RAATTY	2 cut(s)	296, 928
Asp700I	GAANNNNTTC	2 cut(s)	273, 284
AspLEI	GCGC	1 cut(s)	704
AsuC2I	CCSGG	1 cut(s)	539
AsuHPI	GGTGA	3 cut(s)	278, 754, 971
BalI	TGGCCA	1 cut(s)	627
BbvI	GCAGC	1 cut(s)	186
BccI	CCATC	1 cut(s)	582
BceAI	ACGGC	2 cut(s)	173, 775
BciT130I	CCWGG	1 cut(s)	236
BcnI	CCSGG	1 cut(s)	539
BcoDI	GTCTC	2 cut(s)	158, 830
BfaI	CTAG	1 cut(s)	992
BfmI	CTRYAG	1 cut(s)	351
BisI	GCNGC	3 cut(s)	200, 203, 960
BlsI	GCNGC	3 cut(s)	201, 204, 961
Bme1390I	CCNGG	2 cut(s)	236, 539
BmrFI	CCNGG	2 cut(s)	236, 539
BmsI	GCATC	2 cut(s)	419, 907
BpmI	CTGGAG	1 cut(s)	984
BpuEI	CTTGAG	1 cut(s)	812
BpuMI	CCSGG	1 cut(s)	539
BsaAI	YACGTR	1 cut(s)	644
BsaHI	GRCGYC	1 cut(s)	186
BsaI	GGTCTC	1 cut(s)	830
BsaJI	CCNNGG	3 cut(s)	234, 255, 538
BsaWI	WCCGGW	1 cut(s)	263
BsaXI	ACNNNNNCTCC	2 cut(s)	102, 132
Bsc4I	CCNNNNNNNGG	4 cut(s)	476, 512, 554, 758
Bse1I	ACTGG	1 cut(s)	502
Bse3DI	GCAATG	3 cut(s)	165, 369, 522
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	3 cut(s)	234, 255, 538
BseGI	GGATG	1 cut(s)	922
BseLI	CCNNNNNNNGG	4 cut(s)	476, 512, 554, 758
BseMI	GCAATG	3 cut(s)	165, 369, 522
BseNI	ACTGG	1 cut(s)	502
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	186
BshFI	GGCC	3 cut(s)	164, 260, 627
BsiSI	CCGG	3 cut(s)	264, 289, 538
BslFI	GGGAC	2 cut(s)	493, 912
BslI	CCNNNNNNNGG	4 cut(s)	476, 512, 554, 758
BsmAI	GTCTC	2 cut(s)	158, 830
BsmBI	CGTCTC	1 cut(s)	158
BsmFI	GGGAC	2 cut(s)	493, 912
BsnI	GGCC	3 cut(s)	164, 260, 627
Bso31I	GGTCTC	1 cut(s)	830
Bsp1407I	TGTACA	1 cut(s)	675
Bsp143I	GATC	5 cut(s)	223, 343, 466, 565, 805
BspACI	CCGC	6 cut(s)	81, 108, 124, 203, 876, 959
BspANI	GGCC	3 cut(s)	164, 260, 627
BspMAI	CTGCAG	1 cut(s)	355
BspPI	GGATC	2 cut(s)	461, 813
BspTNI	GGTCTC	1 cut(s)	830
BsrDI	GCAATG	3 cut(s)	165, 369, 522
BsrGI	TGTACA	1 cut(s)	675
BsrI	ACTGG	1 cut(s)	502
BssECI	CCNNGG	3 cut(s)	234, 255, 538
BssMI	GATC	5 cut(s)	223, 343, 466, 565, 805
BssNI	GRCGYC	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	236
Bst6I	CTCTTC	1 cut(s)	708
BstACI	GRCGYC	1 cut(s)	186
BstAUI	TGTACA	1 cut(s)	675
BstBAI	YACGTR	1 cut(s)	644
BstC8I	GCNNGC	4 cut(s)	108, 789, 874, 987
BstF5I	GGATG	1 cut(s)	922
BstHHI	GCGC	1 cut(s)	704
BstKTI	GATC	5 cut(s)	226, 346, 469, 568, 808
BstMAI	GTCTC	2 cut(s)	158, 830
BstMBI	GATC	5 cut(s)	223, 343, 466, 565, 805
BstMWI	GCNNNNNNNGC	6 cut(s)	239, 359, 659, 716, 768, 788
BstNI	CCWGG	1 cut(s)	236
BstSCI	CCNGG	2 cut(s)	234, 537
BstSFI	CTRYAG	1 cut(s)	351
BstV1I	GCAGC	1 cut(s)	186
BstX2I	RGATCY	2 cut(s)	466, 805
BstYI	RGATCY	2 cut(s)	466, 805
BsuRI	GGCC	3 cut(s)	164, 260, 627
BtsCI	GGATG	1 cut(s)	922
BtsIMutI	CAGTG	2 cut(s)	495, 848
Cac8I	GCNNGC	4 cut(s)	108, 789, 874, 987
CfoI	GCGC	1 cut(s)	704
CseI	GACGC	1 cut(s)	194
Csp6I	GTAC	3 cut(s)	516, 645, 676
CviAII	CATG	1 cut(s)	398
CviQI	GTAC	3 cut(s)	516, 645, 676
DpnI	GATC	5 cut(s)	225, 345, 468, 567, 807
DpnII	GATC	5 cut(s)	223, 343, 466, 565, 805
EaeI	YGGCCR	1 cut(s)	625
Eam1104I	CTCTTC	1 cut(s)	708
EarI	CTCTTC	1 cut(s)	708
EciI	GGCGGA	2 cut(s)	113, 891
Eco147I	AGGCCT	1 cut(s)	260
Eco31I	GGTCTC	1 cut(s)	830
EcoRII	CCWGG	1 cut(s)	234
Esp3I	CGTCTC	1 cut(s)	158
FaeI	CATG	1 cut(s)	401
FaqI	GGGAC	2 cut(s)	493, 912
FatI	CATG	1 cut(s)	397
FauI	CCCGC	2 cut(s)	88, 115
FblI	GTMKAC	1 cut(s)	544
Fnu4HI	GCNGC	3 cut(s)	200, 203, 960
FokI	GGATG	1 cut(s)	929
Fsp4HI	GCNGC	3 cut(s)	200, 203, 960
FspBI	CTAG	1 cut(s)	992
GlaI	GCGC	1 cut(s)	703
GluI	GCNGC	3 cut(s)	200, 203, 960
GsuI	CTGGAG	1 cut(s)	984
HaeIII	GGCC	3 cut(s)	164, 260, 627
HapII	CCGG	3 cut(s)	264, 289, 538
HgaI	GACGC	1 cut(s)	194
HhaI	GCGC	1 cut(s)	704
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	1 cut(s)	401
Hin6I	GCGC	1 cut(s)	702
HinP1I	GCGC	1 cut(s)	702
HinfI	GANTC	7 cut(s)	49, 320, 385, 818, 879, 976, 995
HpaII	CCGG	3 cut(s)	264, 289, 538
HphI	GGTGA	3 cut(s)	278, 754, 971
Hpy166II	GTNNAC	4 cut(s)	146, 545, 639, 678
Hpy188I	TCNGA	3 cut(s)	48, 175, 279
Hpy188III	TCNNGA	2 cut(s)	308, 992
Hpy8I	GTNNAC	4 cut(s)	146, 545, 639, 678
Hpy99I	CGWCG	2 cut(s)	144, 194
HpyAV	CCTTC	4 cut(s)	40, 402, 860, 889
HpyCH4IV	ACGT	1 cut(s)	643
HpyCH4V	TGCA	5 cut(s)	341, 353, 432, 446, 653
HpyF10VI	GCNNNNNNNGC	6 cut(s)	239, 359, 659, 716, 768, 788
HpySE526I	ACGT	1 cut(s)	643
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	1 cut(s)	401
HspAI	GCGC	1 cut(s)	702
Kzo9I	GATC	5 cut(s)	223, 343, 466, 565, 805
LmnI	GCTCC	1 cut(s)	123
Lsp1109I	GCAGC	1 cut(s)	186
LweI	GCATC	2 cut(s)	419, 907
MaeI	CTAG	1 cut(s)	992
MaeII	ACGT	1 cut(s)	643
MaeIII	GTNAC	2 cut(s)	331, 764
MalI	GATC	5 cut(s)	225, 345, 468, 567, 807
MboI	GATC	5 cut(s)	223, 343, 466, 565, 805
MboII	GAAGA	4 cut(s)	329, 380, 425, 725
MfeI	CAATTG	1 cut(s)	336
MflI	RGATCY	2 cut(s)	466, 805
MlsI	TGGCCA	1 cut(s)	627
MluCI	AATT	5 cut(s)	296, 336, 372, 549, 928
MluNI	TGGCCA	1 cut(s)	627
MlyI	GAGTC	2 cut(s)	827, 888
MmeI	TCCRAC	1 cut(s)	198
Mox20I	TGGCCA	1 cut(s)	627
MroXI	GAANNNNTTC	2 cut(s)	273, 284
MscI	TGGCCA	1 cut(s)	627
MseI	TTAA	1 cut(s)	578
MslI	CAYNNNNRTG	1 cut(s)	1003
Msp20I	TGGCCA	1 cut(s)	627
MspI	CCGG	3 cut(s)	264, 289, 538
MspR9I	CCNGG	2 cut(s)	236, 539
MunI	CAATTG	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	236
MwoI	GCNNNNNNNGC	6 cut(s)	239, 359, 659, 716, 768, 788
NciI	CCSGG	1 cut(s)	539
NdeII	GATC	5 cut(s)	223, 343, 466, 565, 805
NlaIII	CATG	1 cut(s)	401
NmeAIII	GCCGAG	1 cut(s)	280
NmuCI	GTSAC	2 cut(s)	331, 764
PceI	AGGCCT	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	1 cut(s)	148
PdmI	GAANNNNTTC	2 cut(s)	273, 284
PfeI	GAWTC	5 cut(s)	49, 320, 385, 976, 995
PflFI	GACNNNGTC	1 cut(s)	188
PflMI	CCANNNNNTGG	1 cut(s)	554
PkrI	GCNGC	3 cut(s)	201, 204, 961
PleI	GAGTC	2 cut(s)	826, 887
PpsI	GAGTC	2 cut(s)	826, 887
Ppu21I	YACGTR	1 cut(s)	644
PsiI	TTATAA	1 cut(s)	948
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PstI	CTGCAG	1 cut(s)	355
PsuI	RGATCY	2 cut(s)	466, 805
PsyI	GACNNNGTC	1 cut(s)	188
RsaI	GTAC	3 cut(s)	517, 646, 677
RsaNI	GTAC	3 cut(s)	516, 645, 676
RseI	CAYNNNNRTG	1 cut(s)	1003
SaqAI	TTAA	1 cut(s)	578
SatI	GCNGC	3 cut(s)	200, 203, 960
Sau3AI	GATC	5 cut(s)	223, 343, 466, 565, 805
SchI	GAGTC	2 cut(s)	827, 888
ScrFI	CCNGG	2 cut(s)	236, 539
SfaNI	GCATC	2 cut(s)	419, 907
SfcI	CTRYAG	1 cut(s)	351
SmiMI	CAYNNNNRTG	1 cut(s)	1003
SmlI	CTYRAG	1 cut(s)	827
SmoI	CTYRAG	1 cut(s)	827
Sse9I	AATT	5 cut(s)	296, 336, 372, 549, 928
SseBI	AGGCCT	1 cut(s)	260
SsiI	CCGC	6 cut(s)	81, 108, 124, 203, 876, 959
SspI	AATATT	1 cut(s)	284
SspMI	CTAG	1 cut(s)	992
StuI	AGGCCT	1 cut(s)	260
StyD4I	CCNGG	2 cut(s)	234, 537
TaiI	ACGT	1 cut(s)	646
TaqI	TCGA	2 cut(s)	216, 309
TasI	AATT	5 cut(s)	296, 336, 372, 549, 928
TatI	WGTACW	1 cut(s)	675
TauI	GCSGC	2 cut(s)	205, 962
TfiI	GAWTC	5 cut(s)	49, 320, 385, 976, 995
Tru1I	TTAA	1 cut(s)	578
Tru9I	TTAA	1 cut(s)	578
TscAI	CASTG	2 cut(s)	502, 855
TseFI	GTSAC	2 cut(s)	331, 764
TseI	GCWGC	1 cut(s)	199
Tsp45I	GTSAC	2 cut(s)	331, 764
TspDTI	ATGAA	1 cut(s)	987
TspGWI	ACGGA	2 cut(s)	77, 140
TspRI	CASTG	2 cut(s)	502, 855
Tth111I	GACNNNGTC	1 cut(s)	188
Van91I	CCANNNNNTGG	1 cut(s)	554
XapI	RAATTY	2 cut(s)	296, 928
XbaI	TCTAGA	1 cut(s)	991
XmiI	GTMKAC	1 cut(s)	544
XmnI	GAANNNNTTC	2 cut(s)	273, 284
XspI	CTAG	1 cut(s)	992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.