Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0010954

Physical Location & Seq

Genomic Coordinates Forward (+)

18145526 .. 18149124

Gene Structure 3599 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG140300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGCCTCTGCCTCTGACCTCCCTAATGCCGTCGTTCCCCTCCCGCCCGGCGTTGACGAGAGTGAGCTCGATCGCTTTGCCACCGTCGCCAATAAAGTCGCCGATGCCTCCGGCGAAGTTATTCGGAACTATTTCCGGCAGAAATTCGATATTCTCGATAAAGAAGATTCCAGCCCTGTGACCATTGCAGATCAAACAGCAGAGGAACATATGATTTCAGTTATATCACAGAATTTTCCTTCTCATGCTGTTTATGGAGAGGAGAATGGGTGGAGGTGCAAAGAGACGTATGCAGACTATGTTTGGGTATTAGACCCTATTGATGGGACAAAAAGTTTTATCACTGGAAAACCCGTGTTTGGTACTCTTATTTCTCTGCTACTGCGGGGCAAACCAATCCTTGGTATAATCGATCAGCCTATTTTAAGAGAGAGATGGCTCGGGGTAAGTGGAAGGAAAACTACATTGAATGGAAAAGTAGCATCAACACGCAAATGCGCAAACCTGGCACAAGCTTATCTGTACACTACAAGTCCACATCTATTCAGTGCAGAAGCAGAAGAGGCATTTATTCGCGTCAGAAATAAGGTTAAAGTGCCATTGTATGGATGTGACTGCTATGCTTATGCCCTTCTGGCTTCTGGTTATGTGGATCTTGTTGTTGAGTCTGGTCTCAAGCCATACGATTTTCTTTCACTGATACCTGTGATAGAAGGTTCTGGGGGTGTCATAACTGATTGGAAAGGACATCAGCTTTTGTGGGAGGCTTCTGCCAATTCACATGCAACAAGTTTTAATGTAGTGGCAGCTGGAGATAAACAGATTCACCAACAAGCTCTAAATTCATTACAATGGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004401 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0052745 GO:0052803 GO:0052834 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00053 ko00340 ko00562 ko01100 ko01110 ko01230 ko04070 map00053 map00340 map00562 map01100 map01110 map01230 map04070

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

286

Amino Acids

31.42

Weight (kDa)

5.41

Isoelectric Point (pI)

36.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inositol_P	PF00459	23 - 277	2e-57	Inositol monophosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39120 AT4G39120
fragaria_vesca	FvH4_2g09630 FvH4_2g09630 FvH4_2g09630 FvH4_2g09630
malus_domestica	MD05G1061200.v1.1 MD10G1068900.v1.1
prunus_persica	Prupe.8G090900_v2.0.a1
pyrus_communis	pycom05g05220 pycom10g05500
rosa_chinensis	RchiOBHm_Chr6g0265981
rosa_laevigata	RLG00000014141
rosa_multiflora	Rmu_sc0030533.1_g000003
rosa_roxburghii	Rroxscaffold_7G00202170
rosa_rugosa	Rorug06G0022100
rosa_samantha	Rh6AG143300 Rh6BG143600 Rh6CG140300
rosa_wichuraiana	Rw6G012390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	499
AccB7I	CCANNNNNTGG	2 cut(s)	401, 605
AccII	CGCG	1 cut(s)	576
AciI	CCGC	2 cut(s)	44, 385
AclWI	GGATC	1 cut(s)	660
AcsI	RAATTY	3 cut(s)	143, 232, 841
AfaI	GTAC	2 cut(s)	364, 524
AfiI	CCNNNNNNNGG	4 cut(s)	323, 359, 401, 605
AgsI	TTSAA	1 cut(s)	469
AjnI	CCWGG	1 cut(s)	504
AluBI	AGCT	5 cut(s)	67, 515, 754, 809, 836
AluI	AGCT	5 cut(s)	67, 515, 754, 809, 836
Alw21I	GWGCWC	1 cut(s)	69
Alw26I	GTCTC	2 cut(s)	278, 677
AlwI	GGATC	1 cut(s)	660
Ama87I	CYCGRG	1 cut(s)	440
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	806
ApoI	RAATTY	3 cut(s)	143, 232, 841
Asp700I	GAANNNNTTC	2 cut(s)	120, 131
AspLEI	GCGC	1 cut(s)	500
AsuC2I	CCSGG	1 cut(s)	48
AsuHPI	GGTGA	1 cut(s)	818
AvaI	CYCGRG	1 cut(s)	440
BanII	GRGCYC	1 cut(s)	69
BarI	GAAGNNNNNNTAC	2 cut(s)	445, 477
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	1 cut(s)	818
BccI	CCATC	2 cut(s)	317, 429
BceAI	ACGGC	1 cut(s)	14
BcgI	CGANNNNNNTGC	2 cut(s)	59, 93
BciT130I	CCWGG	1 cut(s)	506
BcnI	CCSGG	1 cut(s)	48
BcoDI	GTCTC	2 cut(s)	278, 677
BglI	GCCNNNNNGGC	1 cut(s)	635
BisI	GCNGC	1 cut(s)	807
BlsI	GCNGC	1 cut(s)	808
Bme1390I	CCNGG	2 cut(s)	48, 506
BmeT110I	CYCGRG	1 cut(s)	440
BmrFI	CCNGG	2 cut(s)	48, 506
BmsI	GCATC	2 cut(s)	94, 491
BpmI	CTGGAG	1 cut(s)	831
BpuEI	CTTGAG	1 cut(s)	659
BpuMI	CCSGG	1 cut(s)	48
Bsa29I	ATCGAT	1 cut(s)	411
BsaI	GGTCTC	1 cut(s)	677
BsaJI	CCNNGG	1 cut(s)	400
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	4 cut(s)	323, 359, 401, 605
Bse1I	ACTGG	1 cut(s)	349
Bse3DI	GCAATG	1 cut(s)	183
BseBI	CCWGG	1 cut(s)	506
BseCI	ATCGAT	1 cut(s)	411
BseDI	CCNNGG	1 cut(s)	400
BseGI	GGATG	1 cut(s)	614
BseLI	CCNNNNNNNGG	4 cut(s)	323, 359, 401, 605
BseMI	GCAATG	1 cut(s)	183
BseNI	ACTGG	1 cut(s)	349
BseRI	GAGGAG	1 cut(s)	275
BseXI	GCAGC	1 cut(s)	818
BsgI	GTGCAG	1 cut(s)	570
Bsh1236I	CGCG	1 cut(s)	576
Bsh1285I	CGRYCG	1 cut(s)	73
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	411
BsiEI	CGRYCG	1 cut(s)	73
BsiHKAI	GWGCWC	1 cut(s)	69
BsiHKCI	CYCGRG	1 cut(s)	440
BsiSI	CCGG	3 cut(s)	48, 111, 136
BslFI	GGGAC	1 cut(s)	340
BslI	CCNNNNNNNGG	4 cut(s)	323, 359, 401, 605
BsmAI	GTCTC	2 cut(s)	278, 677
BsmBI	CGTCTC	1 cut(s)	278
BsmFI	GGGAC	1 cut(s)	340
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	677
BsoBI	CYCGRG	1 cut(s)	440
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp1407I	TGTACA	1 cut(s)	522
Bsp143I	GATC	4 cut(s)	70, 190, 412, 652
BspACI	CCGC	2 cut(s)	44, 385
BspANI	GGCC	1 cut(s)	5
BspDI	ATCGAT	1 cut(s)	411
BspFNI	CGCG	1 cut(s)	576
BspPI	GGATC	1 cut(s)	660
BspTNI	GGTCTC	1 cut(s)	677
BsrDI	GCAATG	1 cut(s)	183
BsrGI	TGTACA	1 cut(s)	522
BsrI	ACTGG	1 cut(s)	349
BssECI	CCNNGG	1 cut(s)	400
BssMI	GATC	4 cut(s)	70, 190, 412, 652
BssT1I	CCWWGG	1 cut(s)	400
Bst2UI	CCWGG	1 cut(s)	506
Bst4CI	ACNGT	1 cut(s)	85
Bst6I	CTCTTC	1 cut(s)	555
BstAUI	TGTACA	1 cut(s)	522
BstF5I	GGATG	1 cut(s)	614
BstFNI	CGCG	1 cut(s)	576
BstHHI	GCGC	1 cut(s)	500
BstKTI	GATC	4 cut(s)	73, 193, 415, 655
BstMAI	GTCTC	2 cut(s)	278, 677
BstMBI	GATC	4 cut(s)	70, 190, 412, 652
BstMCI	CGRYCG	1 cut(s)	73
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 506, 563, 635
BstNI	CCWGG	1 cut(s)	506
BstNSI	RCATGY	1 cut(s)	785
BstSCI	CCNGG	2 cut(s)	46, 504
BstUI	CGCG	1 cut(s)	576
BstV1I	GCAGC	1 cut(s)	818
BstX2I	RGATCY	1 cut(s)	652
BstYI	RGATCY	1 cut(s)	652
Bsu15I	ATCGAT	1 cut(s)	411
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	411
BtsCI	GGATG	1 cut(s)	614
BtsIMutI	CAGTG	3 cut(s)	342, 553, 695
CfoI	GCGC	1 cut(s)	500
ClaI	ATCGAT	1 cut(s)	411
CseI	GACGC	1 cut(s)	565
Csp6I	GTAC	2 cut(s)	363, 523
CviAII	CATG	2 cut(s)	245, 782
CviQI	GTAC	2 cut(s)	363, 523
DpnI	GATC	4 cut(s)	72, 192, 414, 654
DpnII	GATC	4 cut(s)	70, 190, 412, 652
Eam1104I	CTCTTC	1 cut(s)	555
EarI	CTCTTC	1 cut(s)	555
Ecl136II	GAGCTC	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	400
Eco24I	GRGCYC	1 cut(s)	69
Eco31I	GGTCTC	1 cut(s)	677
Eco53kI	GAGCTC	1 cut(s)	67
Eco88I	CYCGRG	1 cut(s)	440
EcoICRI	GAGCTC	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	504
EcoT14I	CCWWGG	1 cut(s)	400
EcoT38I	GRGCYC	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	400
Esp3I	CGTCTC	1 cut(s)	278
FaeI	CATG	2 cut(s)	248, 785
FaqI	GGGAC	1 cut(s)	340
FatI	CATG	2 cut(s)	244, 781
FauI	CCCGC	2 cut(s)	51, 378
FauNDI	CATATG	1 cut(s)	210
Fnu4HI	GCNGC	1 cut(s)	807
FokI	GGATG	1 cut(s)	621
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	1 cut(s)	807
FspI	TGCGCA	1 cut(s)	499
GlaI	GCGC	1 cut(s)	499
GluI	GCNGC	1 cut(s)	807
GsuI	CTGGAG	1 cut(s)	831
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	48, 111, 136
HgaI	GACGC	1 cut(s)	565
HhaI	GCGC	1 cut(s)	500
Hin1II	CATG	2 cut(s)	248, 785
Hin6I	GCGC	1 cut(s)	498
HinP1I	GCGC	1 cut(s)	498
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HindIII	AAGCTT	1 cut(s)	513
HinfI	GANTC	3 cut(s)	167, 665, 823
HpaII	CCGG	3 cut(s)	48, 111, 136
HphI	GGTGA	1 cut(s)	818
Hpy166II	GTNNAC	3 cut(s)	55, 525, 536
Hpy188I	TCNGA	3 cut(s)	16, 126, 581
Hpy188III	TCNNGA	1 cut(s)	155
Hpy8I	GTNNAC	3 cut(s)	55, 525, 536
Hpy99I	CGWCG	2 cut(s)	35, 89
HpyAV	CCTTC	4 cut(s)	249, 447, 641, 707
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4IV	ACGT	1 cut(s)	287
HpyCH4V	TGCA	5 cut(s)	188, 279, 293, 551, 785
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 506, 563, 635
HpySE526I	ACGT	1 cut(s)	287
Hsp92II	CATG	2 cut(s)	248, 785
HspAI	GCGC	1 cut(s)	498
Kzo9I	GATC	4 cut(s)	70, 190, 412, 652
Lsp1109I	GCAGC	1 cut(s)	818
LweI	GCATC	2 cut(s)	94, 491
MaeII	ACGT	1 cut(s)	287
MaeIII	GTNAC	2 cut(s)	178, 611
MalI	GATC	4 cut(s)	72, 192, 414, 654
MboI	GATC	4 cut(s)	70, 190, 412, 652
MboII	GAAGA	2 cut(s)	176, 572
MflI	RGATCY	1 cut(s)	652
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	4 cut(s)	143, 232, 775, 841
MlyI	GAGTC	1 cut(s)	674
MroXI	GAANNNNTTC	2 cut(s)	120, 131
MseI	TTAA	3 cut(s)	425, 591, 795
MslI	CAYNNNNRTG	2 cut(s)	493, 850
MspA1I	CMGCKG	1 cut(s)	809
MspI	CCGG	3 cut(s)	48, 111, 136
MspR9I	CCNGG	2 cut(s)	48, 506
MvaI	CCWGG	1 cut(s)	506
MvnI	CGCG	1 cut(s)	576
MwoI	GCNNNNNNNGC	4 cut(s)	86, 506, 563, 635
NciI	CCSGG	1 cut(s)	48
NdeI	CATATG	1 cut(s)	210
NdeII	GATC	4 cut(s)	70, 190, 412, 652
NlaIII	CATG	2 cut(s)	248, 785
NmuCI	GTSAC	2 cut(s)	178, 611
NsbI	TGCGCA	1 cut(s)	499
NspI	RCATGY	1 cut(s)	785
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PdmI	GAANNNNTTC	2 cut(s)	120, 131
PfeI	GAWTC	2 cut(s)	167, 823
PflMI	CCANNNNNTGG	2 cut(s)	401, 605
PkrI	GCNGC	1 cut(s)	808
Ple19I	CGATCG	1 cut(s)	73
PleI	GAGTC	1 cut(s)	673
PpsI	GAGTC	1 cut(s)	673
Psp124BI	GAGCTC	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	504
PspGI	CCWGG	1 cut(s)	504
PsuI	RGATCY	1 cut(s)	652
PvuI	CGATCG	1 cut(s)	73
PvuII	CAGCTG	1 cut(s)	809
RsaI	GTAC	2 cut(s)	364, 524
RsaNI	GTAC	2 cut(s)	363, 523
RseI	CAYNNNNRTG	2 cut(s)	493, 850
SacI	GAGCTC	1 cut(s)	69
SaqAI	TTAA	3 cut(s)	425, 591, 795
SatI	GCNGC	1 cut(s)	807
Sau3AI	GATC	4 cut(s)	70, 190, 412, 652
SchI	GAGTC	1 cut(s)	674
ScrFI	CCNGG	2 cut(s)	48, 506
SduI	GDGCHC	1 cut(s)	69
SfaNI	GCATC	2 cut(s)	94, 491
SmiMI	CAYNNNNRTG	2 cut(s)	493, 850
SmlI	CTYRAG	1 cut(s)	674
SmoI	CTYRAG	1 cut(s)	674
Sse9I	AATT	4 cut(s)	143, 232, 775, 841
SsiI	CCGC	2 cut(s)	44, 385
SstI	GAGCTC	1 cut(s)	69
StyD4I	CCNGG	2 cut(s)	46, 504
StyI	CCWWGG	1 cut(s)	400
TaaI	ACNGT	1 cut(s)	85
TaiI	ACGT	1 cut(s)	290
TaqI	TCGA	4 cut(s)	69, 147, 156, 411
TasI	AATT	4 cut(s)	143, 232, 775, 841
TatI	WGTACW	1 cut(s)	522
TfiI	GAWTC	2 cut(s)	167, 823
Tru1I	TTAA	3 cut(s)	425, 591, 795
Tru9I	TTAA	3 cut(s)	425, 591, 795
TscAI	CASTG	3 cut(s)	349, 553, 702
TseFI	GTSAC	2 cut(s)	178, 611
TseI	GCWGC	1 cut(s)	806
Tsp45I	GTSAC	2 cut(s)	178, 611
TspDTI	ATGAA	1 cut(s)	834
TspRI	CASTG	3 cut(s)	349, 553, 702
Van91I	CCANNNNNTGG	2 cut(s)	401, 605
XapI	RAATTY	3 cut(s)	143, 232, 841
XceI	RCATGY	1 cut(s)	785
XmnI	GAANNNNTTC	2 cut(s)	120, 131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.