AT4G39370

Belongs to the peptidase C19 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0010504
Physical Location & Seq
Forward (+)
18306135 .. 18308969
2835 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G39370.3

Sequence Viewer

Length: 1485 bp
ATGGTTTCTAGAAGAGGCTCCGAGACAAAAGCGATTGTCTGTGTCCTCACGGATAGAATTAGGATCTCTAATCAATGGGTTTCGCATTTGTCTTTCGCTGGTCTACTTGGTGTTGCTGGTTTCGTATTTGCCCAACAGCACGGTCTATTCCGCAACTTAAACAACTTAAAACTCTTCTCCGGTAGAGAAAAAGACTCCGGAGACGATTCTTTTCTCGTACCTGGCCTTCAAAATCTCGGAAATAACTGCTTCCTCAACGTCATCCTCCAGGCTCTAGCGAGCTGCAAAGATTTTAGGAGTTTTCTTCAATGGGTTCTAGAGGATGCGAGAGGTTCGTTAGCAGGAGAACAAGAGGAACAGCTTCCTCTTACTTTTGCTTTGTCTGCTTTATTACAAGAGCTCGGCACAGTTGGAAGTAGACGATCTGTATCTAACCCTCGTAAAGTTATGGTGACATTGACTGACTATGCCAAAAATTTCAATTTGACAAGCCAACAGGATGCAGCAGAAGCCCTTCTTCATCTTATATCTTCTTTGCAAGAAGAGATTGTAGTTTGTTATCGCCCTAGCCAAAGTAGTAATCTTTCGGATATACTTTTCTCTCGCAACTTGAGAATGCTTGCGCCTAGTGAAGGCCTCCATGGTTTGATGGAGCTCAAGAGATGGCATAAACATTTGCGTGGACCATTTGATGGGATTCTTGGTAGTACTTTAATGTGCCGAACTTGTTCATCTCAGATTTCTTTGGAGTTTCAGTTTTTTCATACTCTGCCTCTTTCTCCTTTACTCCATCACGGTGGTTACAACATTATGTCTGGATGCACTTTGGAGCATTGCTTGAAGAAGTTTCTTAACACTGAGAAAGTTGAAAACTACTTCTGCTATAGATGCTGGCATGGTGCTGCACTGAAATATTTATCTGTGATAGGAGCAGCTGAGACGGAAATCGAAAAGCTCAGGAGCTGTGGCGGAGAGGACCAATGTGACTGTAAAACTTCTCTTCATCTTCAAAGAATGCCTTGGTCAAATAGCTATTCCCATATATTGAAACAGTTAATCATCGCCCGTTTCCCAAAGCTCCTATGCATTCAAGTGCAACGCGCTTCGTTTAACATGTTTGAGGAATTCAAACTGTCGGGACATATCGCATTTCCACTTGTCTTGAACCTCTCCTTGTTCACACCATCTTCAATAGGCGTAAACATAGAAGAAAGGATTGAGATGTCGTCAGAGTACCAAAAGCCAGAAGCATCAAAAAATCACGGCATGTACAGGCTTGTAACAGTAGTGGAGCATTTTGGTAGAACCGGAAGCGGGCATTATACTGTATACAGAAGTGTGAGAGTGTTCTCACAAGAGGAAGAAGAAGAAGATTGTGATGAGGATTTGAGCTGGTTTAGTATATCTGATTCAGAAGTTTGCAGAGTTTCAGAGAGTGATGTTCTTGGTGCTGAAGCTAGCTTGCTCTTCTATGAAAGGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04137 map04137
Pfam Domains
Protein Families
UCH

Protein Analysis

494

Amino Acids

55.77

Weight (kDa)

6.2

Isoelectric Point (pI)

58.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UCH PF00443 75 - 502 1.9e-40 Ubiquitin carboxyl-terminal hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 692
AccI GTMKAC 3 cut(s) 103, 418, 1329
AccII CGCG 1 cut(s) 1101
AccIII TCCGGA 1 cut(s) 197
AciI CCGC 3 cut(s) 151, 969, 1314
AclWI GGATC 1 cut(s) 71
AcsI RAATTY 2 cut(s) 475, 1124
AcuI CTGAAG 1 cut(s) 1473
AfaI GTAC 4 cut(s) 219, 709, 1235, 1271
AfiI CCNNNNNNNGG 3 cut(s) 632, 692, 1314
AflIII ACRYGT 1 cut(s) 1113
AjnI CCWGG 2 cut(s) 220, 267
Alw21I GWGCWC 2 cut(s) 402, 657
Alw26I GTCTC 3 cut(s) 17, 195, 932
AlwI GGATC 1 cut(s) 71
AlwNI CAGNNNCTG 1 cut(s) 963
Aor13HI TCCGGA 1 cut(s) 197
AoxI GGCC 2 cut(s) 223, 634
ApeKI GCWGC 4 cut(s) 282, 503, 902, 932
ApoI RAATTY 2 cut(s) 475, 1124
Asp700I GAANNNNTTC 3 cut(s) 360, 513, 727
AspLEI GCGC 2 cut(s) 625, 1103
AspS9I GGNCC 2 cut(s) 683, 976
AsuHPI GGTGA 1 cut(s) 463
AsuNHI GCTAGC 1 cut(s) 1457
AvaII GGWCC 2 cut(s) 683, 976
BanII GRGCYC 2 cut(s) 402, 657
BarI GAAGNNNNNNTAC 2 cut(s) 210, 242
Bbv12I GWGCWC 2 cut(s) 402, 657
BbvI GCAGC 4 cut(s) 269, 515, 889, 944
BccI CCATC 5 cut(s) 643, 657, 686, 798, 1192
BceAI ACGGC 1 cut(s) 1279
BciT130I CCWGG 2 cut(s) 222, 269
BcoDI GTCTC 3 cut(s) 17, 195, 932
BfaI CTAG 6 cut(s) 9, 275, 317, 567, 627, 1458
BfmI CTRYAG 1 cut(s) 883
BisI GCNGC 4 cut(s) 283, 504, 903, 933
BlsI GCNGC 4 cut(s) 284, 505, 904, 934
BmcAI AGTACT 1 cut(s) 709
Bme1390I CCNGG 2 cut(s) 222, 269
Bme18I GGWCC 2 cut(s) 683, 976
BmgT120I GGNCC 2 cut(s) 683, 976
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 2 cut(s) 222, 269
BmsI GCATC 5 cut(s) 313, 490, 809, 878, 1259
BmtI GCTAGC 1 cut(s) 1461
BpmI CTGGAG 1 cut(s) 251
Bpu10I CCTNAGC 1 cut(s) 956
BpuEI CTTGAG 2 cut(s) 631, 641
BsaBI GATNNNNATC 1 cut(s) 427
BsaJI CCNNGG 2 cut(s) 640, 1019
BsaWI WCCGGW 3 cut(s) 179, 197, 1307
BsaXI ACNNNNNCTCC 2 cut(s) 740, 770
Bsc4I CCNNNNNNNGG 3 cut(s) 632, 692, 1314
Bse3DI GCAATG 1 cut(s) 832
Bse8I GATNNNNATC 1 cut(s) 427
BseAI TCCGGA 1 cut(s) 197
BseBI CCWGG 2 cut(s) 222, 269
BseDI CCNNGG 2 cut(s) 640, 1019
BseGI GGATG 4 cut(s) 261, 328, 505, 824
BseJI GATNNNNATC 1 cut(s) 427
BseLI CCNNNNNNNGG 3 cut(s) 632, 692, 1314
BseMI GCAATG 1 cut(s) 832
BseMII CTCAG 4 cut(s) 749, 849, 927, 970
BseXI GCAGC 4 cut(s) 269, 515, 889, 944
BsgI GTGCAG 1 cut(s) 888
Bsh1236I CGCG 1 cut(s) 1101
BshFI GGCC 2 cut(s) 225, 636
BsiHKAI GWGCWC 2 cut(s) 402, 657
BsiSI CCGG 3 cut(s) 180, 198, 1308
BslFI GGGAC 1 cut(s) 1152
BslI CCNNNNNNNGG 3 cut(s) 632, 692, 1314
BsmAI GTCTC 3 cut(s) 17, 195, 932
BsmBI CGTCTC 2 cut(s) 195, 932
BsmFI GGGAC 1 cut(s) 1152
BsmI GAATGC 3 cut(s) 621, 1020, 1086
BsnI GGCC 2 cut(s) 225, 636
Bsp1286I GDGCHC 2 cut(s) 402, 657
Bsp13I TCCGGA 1 cut(s) 197
Bsp1407I TGTACA 1 cut(s) 1269
Bsp143I GATC 2 cut(s) 63, 422
Bsp19I CCATGG 1 cut(s) 640
BspACI CCGC 3 cut(s) 151, 969, 1314
BspANI GGCC 2 cut(s) 225, 636
BspCNI CTCAG 4 cut(s) 748, 850, 928, 969
BspEI TCCGGA 1 cut(s) 197
BspFNI CGCG 1 cut(s) 1101
BspLI GGNNCC 1 cut(s) 19
BspOI GCTAGC 1 cut(s) 1461
BspPI GGATC 1 cut(s) 71
BspQI GCTCTTC 1 cut(s) 1472
BsrDI GCAATG 1 cut(s) 832
BsrGI TGTACA 1 cut(s) 1269
BssECI CCNNGG 2 cut(s) 640, 1019
BssMI GATC 2 cut(s) 63, 422
BssNAI GTATAC 1 cut(s) 1330
BssT1I CCWWGG 2 cut(s) 640, 1019
Bst1107I GTATAC 1 cut(s) 1330
Bst2UI CCWGG 2 cut(s) 222, 269
Bst4CI ACNGT 8 cut(s) 143, 409, 797, 989, 1053, 1134, 1285, 1327
Bst6I CTCTTC 5 cut(s) 7, 179, 537, 1005, 1472
BstAUI TGTACA 1 cut(s) 1269
BstC8I GCNNGC 6 cut(s) 280, 621, 893, 1316, 1459, 1463
BstDEI CTNAG 4 cut(s) 735, 858, 936, 956
BstDSI CCRYGG 1 cut(s) 640
BstENI CCTNNNNNAGG 1 cut(s) 630
BstF5I GGATG 4 cut(s) 261, 328, 505, 824
BstFNI CGCG 1 cut(s) 1101
BstHHI GCGC 2 cut(s) 625, 1103
BstKTI GATC 2 cut(s) 66, 425
BstMAI GTCTC 3 cut(s) 17, 195, 932
BstMBI GATC 2 cut(s) 63, 422
BstMWI GCNNNNNNNGC 3 cut(s) 383, 509, 888
BstNI CCWGG 2 cut(s) 222, 269
BstNSI RCATGY 2 cut(s) 1117, 1270
BstSCI CCNGG 2 cut(s) 220, 267
BstSFI CTRYAG 1 cut(s) 883
BstUI CGCG 1 cut(s) 1101
BstV1I GCAGC 4 cut(s) 269, 515, 889, 944
BstX2I RGATCY 1 cut(s) 63
BstXI CCANNNNNNTGG 1 cut(s) 797
BstYI RGATCY 1 cut(s) 63
BstZ17I GTATAC 1 cut(s) 1330
BsuRI GGCC 2 cut(s) 225, 636
BtgI CCRYGG 1 cut(s) 640
BtgZI GCGATG 1 cut(s) 1045
BtsCI GGATG 4 cut(s) 261, 328, 505, 824
BtsIMutI CAGTG 2 cut(s) 855, 905
Cac8I GCNNGC 6 cut(s) 280, 621, 893, 1316, 1459, 1463
CaiI CAGNNNCTG 1 cut(s) 963
CfoI GCGC 2 cut(s) 625, 1103
Cfr13I GGNCC 2 cut(s) 683, 976
Csp6I GTAC 4 cut(s) 218, 708, 1234, 1270
CspCI CAANNNNNGTGG 2 cut(s) 1143, 1178
CviAII CATG 4 cut(s) 641, 896, 1114, 1267
CviQI GTAC 4 cut(s) 218, 708, 1234, 1270
DdeI CTNAG 4 cut(s) 735, 858, 936, 956
DpnI GATC 2 cut(s) 65, 424
DpnII GATC 2 cut(s) 63, 422
Eam1104I CTCTTC 5 cut(s) 7, 179, 537, 1005, 1472
EarI CTCTTC 5 cut(s) 7, 179, 537, 1005, 1472
EciI GGCGGA 1 cut(s) 984
Ecl136II GAGCTC 2 cut(s) 400, 655
Eco130I CCWWGG 2 cut(s) 640, 1019
Eco147I AGGCCT 1 cut(s) 636
Eco24I GRGCYC 2 cut(s) 402, 657
Eco47I GGWCC 2 cut(s) 683, 976
Eco53kI GAGCTC 2 cut(s) 400, 655
Eco57I CTGAAG 1 cut(s) 1473
EcoICRI GAGCTC 2 cut(s) 400, 655
EcoNI CCTNNNNNAGG 1 cut(s) 630
EcoRI GAATTC 1 cut(s) 1124
EcoRII CCWGG 2 cut(s) 220, 267
EcoT14I CCWWGG 2 cut(s) 640, 1019
EcoT22I ATGCAT 1 cut(s) 1088
EcoT38I GRGCYC 2 cut(s) 402, 657
ErhI CCWWGG 2 cut(s) 640, 1019
Esp3I CGTCTC 2 cut(s) 195, 932
FaeI CATG 4 cut(s) 644, 899, 1117, 1270
FalI AAGNNNNNCTT 4 cut(s) 501, 533, 1003, 1035
FaqI GGGAC 1 cut(s) 1152
FatI CATG 4 cut(s) 640, 895, 1113, 1266
FauI CCCGC 1 cut(s) 1307
FblI GTMKAC 3 cut(s) 103, 418, 1329
Fnu4HI GCNGC 4 cut(s) 283, 504, 903, 933
FokI GGATG 4 cut(s) 248, 335, 512, 831
FriOI GRGCYC 2 cut(s) 402, 657
Fsp4HI GCNGC 4 cut(s) 283, 504, 903, 933
FspBI CTAG 6 cut(s) 9, 275, 317, 567, 627, 1458
GlaI GCGC 2 cut(s) 624, 1102
GluI GCNGC 4 cut(s) 283, 504, 903, 933
GsuI CTGGAG 1 cut(s) 251
HaeIII GGCC 2 cut(s) 225, 636
HapII CCGG 3 cut(s) 180, 198, 1308
HhaI GCGC 2 cut(s) 625, 1103
Hin1II CATG 4 cut(s) 644, 899, 1117, 1270
Hin6I GCGC 2 cut(s) 623, 1101
HinP1I GCGC 2 cut(s) 623, 1101
HinfI GANTC 4 cut(s) 194, 206, 697, 1409
HpaII CCGG 3 cut(s) 180, 198, 1308
HphI GGTGA 1 cut(s) 463
Hpy166II GTNNAC 6 cut(s) 104, 419, 683, 1179, 1201, 1330
Hpy188I TCNGA 8 cut(s) 22, 239, 589, 738, 1231, 1408, 1414, 1432
Hpy188III TCNNGA 8 cut(s) 9, 198, 317, 658, 816, 958, 1137, 1162
Hpy8I GTNNAC 6 cut(s) 104, 419, 683, 1179, 1201, 1330
HpyAV CCTTC 3 cut(s) 236, 524, 626
HpyCH4III ACNGT 8 cut(s) 143, 409, 797, 989, 1053, 1134, 1285, 1327
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 8 cut(s) 285, 503, 538, 822, 905, 1086, 1096, 1422
HpyF10VI GCNNNNNNNGC 3 cut(s) 383, 509, 888
HpyF3I CTNAG 4 cut(s) 735, 858, 936, 956
HpySE526I ACGT 1 cut(s) 258
Hsp92II CATG 4 cut(s) 644, 899, 1117, 1270
HspAI GCGC 2 cut(s) 623, 1101
Kpn2I TCCGGA 1 cut(s) 197
Kzo9I GATC 2 cut(s) 63, 422
LguI GCTCTTC 1 cut(s) 1472
LmnI GCTCC 7 cut(s) 23, 652, 829, 929, 960, 1083, 1291
Lsp1109I GCAGC 4 cut(s) 269, 515, 889, 944
LweI GCATC 5 cut(s) 313, 490, 809, 878, 1259
MaeI CTAG 6 cut(s) 9, 275, 317, 567, 627, 1458
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 4 cut(s) 451, 800, 983, 1279
MalI GATC 2 cut(s) 65, 424
MboI GATC 2 cut(s) 63, 422
MflI RGATCY 1 cut(s) 63
MhlI GDGCHC 2 cut(s) 402, 657
MluCI AATT 4 cut(s) 57, 475, 481, 1124
MlyI GAGTC 1 cut(s) 188
MmeI TCCRAC 1 cut(s) 391
Mph1103I ATGCAT 1 cut(s) 1088
MroI TCCGGA 1 cut(s) 197
MroXI GAANNNNTTC 3 cut(s) 360, 513, 727
MseI TTAA 6 cut(s) 158, 167, 713, 852, 1055, 1110
MslI CAYNNNNRTG 3 cut(s) 678, 795, 1091
MspA1I CMGCKG 1 cut(s) 935
MspI CCGG 3 cut(s) 180, 198, 1308
MspR9I CCNGG 2 cut(s) 222, 269
Mva1269I GAATGC 3 cut(s) 621, 1020, 1086
MvaI CCWGG 2 cut(s) 222, 269
MvnI CGCG 1 cut(s) 1101
MwoI GCNNNNNNNGC 3 cut(s) 383, 509, 888
NcoI CCATGG 1 cut(s) 640
NdeII GATC 2 cut(s) 63, 422
NheI GCTAGC 1 cut(s) 1457
NlaIII CATG 4 cut(s) 644, 899, 1117, 1270
NlaIV GGNNCC 1 cut(s) 19
NmeAIII GCCGAG 1 cut(s) 381
NmuCI GTSAC 2 cut(s) 451, 983
NsiI ATGCAT 1 cut(s) 1088
NspI RCATGY 2 cut(s) 1117, 1270
PceI AGGCCT 1 cut(s) 636
PciI ACATGT 1 cut(s) 1113
PciSI GCTCTTC 1 cut(s) 1472
PctI GAATGC 3 cut(s) 621, 1020, 1086
PdmI GAANNNNTTC 3 cut(s) 360, 513, 727
PfeI GAWTC 3 cut(s) 206, 697, 1409
PflMI CCANNNNNTGG 1 cut(s) 692
PkrI GCNGC 4 cut(s) 284, 505, 904, 934
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
PscI ACATGT 1 cut(s) 1113
Psp124BI GAGCTC 2 cut(s) 402, 657
Psp6I CCWGG 2 cut(s) 220, 267
PspGI CCWGG 2 cut(s) 220, 267
PspN4I GGNNCC 1 cut(s) 19
PspPI GGNCC 2 cut(s) 683, 976
PstNI CAGNNNCTG 1 cut(s) 963
PsuI RGATCY 1 cut(s) 63
PvuII CAGCTG 1 cut(s) 935
RsaI GTAC 4 cut(s) 219, 709, 1235, 1271
RsaNI GTAC 4 cut(s) 218, 708, 1234, 1270
RseI CAYNNNNRTG 3 cut(s) 678, 795, 1091
SacI GAGCTC 2 cut(s) 402, 657
SapI GCTCTTC 1 cut(s) 1472
SaqAI TTAA 6 cut(s) 158, 167, 713, 852, 1055, 1110
SatI GCNGC 4 cut(s) 283, 504, 903, 933
Sau3AI GATC 2 cut(s) 63, 422
Sau96I GGNCC 2 cut(s) 683, 976
ScaI AGTACT 1 cut(s) 709
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 2 cut(s) 222, 269
SduI GDGCHC 2 cut(s) 402, 657
SfaNI GCATC 5 cut(s) 313, 490, 809, 878, 1259
SfcI CTRYAG 1 cut(s) 883
SinI GGWCC 2 cut(s) 683, 976
SmiMI CAYNNNNRTG 3 cut(s) 678, 795, 1091
SmlI CTYRAG 2 cut(s) 610, 656
SmoI CTYRAG 2 cut(s) 610, 656
Sse9I AATT 4 cut(s) 57, 475, 481, 1124
SseBI AGGCCT 1 cut(s) 636
SsiI CCGC 3 cut(s) 151, 969, 1314
SspI AATATT 1 cut(s) 914
SspMI CTAG 6 cut(s) 9, 275, 317, 567, 627, 1458
SstI GAGCTC 2 cut(s) 402, 657
StuI AGGCCT 1 cut(s) 636
StyD4I CCNGG 2 cut(s) 220, 267
StyI CCWWGG 2 cut(s) 640, 1019
TaaI ACNGT 8 cut(s) 143, 409, 797, 989, 1053, 1134, 1285, 1327
TaiI ACGT 1 cut(s) 261
TaqI TCGA 1 cut(s) 948
TasI AATT 4 cut(s) 57, 475, 481, 1124
TatI WGTACW 2 cut(s) 707, 1269
TfiI GAWTC 3 cut(s) 206, 697, 1409
Tru1I TTAA 6 cut(s) 158, 167, 713, 852, 1055, 1110
Tru9I TTAA 6 cut(s) 158, 167, 713, 852, 1055, 1110
TscAI CASTG 2 cut(s) 862, 912
TseFI GTSAC 2 cut(s) 451, 983
TseI GCWGC 4 cut(s) 282, 503, 902, 932
Tsp45I GTSAC 2 cut(s) 451, 983
TspDTI ATGAA 4 cut(s) 509, 720, 752, 992
TspGWI ACGGA 2 cut(s) 65, 956
TspRI CASTG 2 cut(s) 862, 912
Van91I CCANNNNNTGG 1 cut(s) 692
VpaK11BI GGWCC 2 cut(s) 683, 976
XagI CCTNNNNNAGG 1 cut(s) 630
XapI RAATTY 2 cut(s) 475, 1124
XbaI TCTAGA 2 cut(s) 8, 316
XceI RCATGY 2 cut(s) 1117, 1270
XmiI GTMKAC 3 cut(s) 103, 418, 1329
XmnI GAANNNNTTC 3 cut(s) 360, 513, 727
XspI CTAG 6 cut(s) 9, 275, 317, 567, 627, 1458
ZrmI AGTACT 1 cut(s) 709
Zsp2I ATGCAT 1 cut(s) 1088
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.