Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010504

Physical Location & Seq

Genomic Coordinates Reverse (-)

25640124 .. 25642306

Gene Structure 2183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g29020.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGAAGTTTGAAAGGGAGGTAAATTTGAAGTGTTTGATTGGGCAATTCCAACAAGGGTTTATGACTTTATCTGGTTCAAGCTCGATTTCATCTGTGGCTGCTCTTCTGGGTGTTGCTGGTGGCTTTGTTCTTGCTCTCAGAGGCTTGAAATTCGGCATCCTAAACACCTTACACTTGGAGTGGCTGCCACACACTGAGACTTCTTCTCCCGAGCAGCTGCCTTTGGTACCGGGCCTCCAAAATCTTGGAAATAATTGTTTTCTCAATGTTATTTTACAGGCTCTTGCTAGCTGTTCATGCTTTCAACCCTTTCTCCAGAAGGTTTTAGAGGAATATGAGTTCTCAGCAGCTGGCAATCGCGTTGATGGCTTTCCTCTTGCGATAGCTTTGGCTACTTTGTTAGAAGACCTGCGCGTAGTTGGTGGAGGAAGAGTTGTATTAAGTCCACGGAAAGTGATGCTTGCAATGGCAGATTACATTCAGAATTTCGATCTAACAAGCCAGCAGGATGCAGCAGAAGCATTTCTTCATCTTCTGTCCTCTTTAAGAGAAGAATTTTCAGATTGCTATCTTCCAAATCAATGTTCTTTGGCAGAACTCTGTGCATCTAATTGTAGGATTATTACTCCTAAGAGTACGGAGAACCAGAGTAAGCAGGCAAGGTGGCAGCAATACTACCTTGGGCCATTTGATGGAATTCTCGGTAGCATCCTCACGTGCCAAAGTTGCTCATCACAGATATCATTGAATTTCGAATCTTTTCACAGCTTGCCTCTTTCACCAGTCCTTGATGGCGGTGGCACAATTATGGTTGGATGCACCTTAGAGGATTGCCTGGAGCAGTTCACTGCTGCTGAGCAAGTTGAGAATTACCACTGTAACCATTGTTGGCACATTGCGGCAGTCAAGTATTTATTTTCTCTAGGAGTAAATGAGGTAAATCCTTTATTCCCATATTATGAAAATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

UCH

Protein Analysis

324

Amino Acids

35.54

Weight (kDa)

4.91

Isoelectric Point (pI)

51.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39370 AT4G39370 AT4G39370
fragaria_vesca	FvH4_1g23260 FvH4_1g23260 FvH4_1g23260 FvH4_1g23260
malus_domestica	MD01G1015800.v1.1
prunus_persica	Prupe.6G165900_v2.0.a1 Prupe.6G165900_v2.0.a1
pyrus_communis	pycom15g29020
rosa_chinensis	RchiOBHm_Chr2g0118111
rosa_laevigata	RLG00000018391
rosa_roxburghii	Rroxscaffold_2G00125970
rosa_rugosa	Rorug02G0216000 Rorug02G0216100
rosa_samantha	Rh2AG273100 Rh2BG284900 Rh2DG280800 Rh2DG299100
rosa_wichuraiana	Rw2G021560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	417
Acc65I	GGTACC	1 cut(s)	226
AccB1I	GGYRCC	1 cut(s)	226
AccB7I	CCANNNNNTGG	1 cut(s)	692
AccII	CGCG	2 cut(s)	360, 414
AciI	CCGC	2 cut(s)	795, 899
AcsI	RAATTY	6 cut(s)	22, 149, 484, 554, 696, 748
AcvI	CACGTG	1 cut(s)	717
AfaI	GTAC	2 cut(s)	228, 637
AfiI	CCNNNNNNNGG	1 cut(s)	692
AgsI	TTSAA	6 cut(s)	11, 28, 78, 148, 305, 748
AjnI	CCWGG	1 cut(s)	834
AjuI	GAANNNNNNNTTGG	2 cut(s)	568, 600
AloI	GAACNNNNNNTCC	2 cut(s)	323, 355
AluBI	AGCT	6 cut(s)	81, 217, 291, 350, 386, 768
AluI	AGCT	6 cut(s)	81, 217, 291, 350, 386, 768
Alw26I	GTCTC	1 cut(s)	191
AlwNI	CAGNNNCTG	1 cut(s)	350
Ama87I	CYCGRG	1 cut(s)	209
AoxI	GGCC	2 cut(s)	232, 683
ApeKI	GCWGC	8 cut(s)	98, 184, 214, 217, 347, 512, 667, 851
ApoI	RAATTY	6 cut(s)	22, 149, 484, 554, 696, 748
Asp700I	GAANNNNTTC	2 cut(s)	522, 759
Asp718I	GGTACC	1 cut(s)	226
AspLEI	GCGC	1 cut(s)	414
AspS9I	GGNCC	2 cut(s)	232, 683
AsuC2I	CCSGG	1 cut(s)	231
AsuHPI	GGTGA	1 cut(s)	771
AsuII	TTCGAA	1 cut(s)	753
AsuNHI	GCTAGC	1 cut(s)	287
AvaI	CYCGRG	1 cut(s)	209
BanI	GGYRCC	1 cut(s)	226
BbrPI	CACGTG	1 cut(s)	717
BbsI	GAAGAC	1 cut(s)	411
BbvI	GCAGC	8 cut(s)	85, 171, 204, 226, 359, 524, 679, 838
BccI	CCATC	3 cut(s)	359, 686, 785
BciT130I	CCWGG	1 cut(s)	836
BcnI	CCSGG	1 cut(s)	231
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	2 cut(s)	288, 923
BfuAI	ACCTGC	1 cut(s)	417
BisI	GCNGC	9 cut(s)	99, 185, 215, 218, 348, 513, 668, 852, 900
BlpI	GCTNAGC	1 cut(s)	855
BlsI	GCNGC	9 cut(s)	100, 186, 216, 219, 349, 514, 669, 853, 901
Bme1390I	CCNGG	2 cut(s)	231, 836
BmeT110I	CYCGRG	1 cut(s)	209
BmgT120I	GGNCC	2 cut(s)	232, 683
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	2 cut(s)	231, 836
BmsI	GCATC	6 cut(s)	165, 447, 499, 614, 717, 806
BmtI	GCTAGC	1 cut(s)	291
BpiI	GAAGAC	1 cut(s)	411
BpmI	CTGGAG	2 cut(s)	299, 857
Bpu1102I	GCTNAGC	1 cut(s)	855
Bpu14I	TTCGAA	1 cut(s)	753
BpuMI	CCSGG	1 cut(s)	231
BsaAI	YACGTR	1 cut(s)	717
BsaBI	GATNNNNATC	1 cut(s)	567
BsaJI	CCNNGG	2 cut(s)	446, 679
BsaXI	ACNNNNNCTCC	8 cut(s)	190, 219, 220, 249, 297, 327, 417, 447
Bsc4I	CCNNNNNNNGG	1 cut(s)	692
Bse1I	ACTGG	1 cut(s)	782
Bse3DI	GCAATG	2 cut(s)	471, 894
Bse8I	GATNNNNATC	1 cut(s)	567
BseBI	CCWGG	1 cut(s)	836
BseDI	CCNNGG	2 cut(s)	446, 679
BseGI	GGATG	4 cut(s)	156, 514, 708, 821
BseJI	GATNNNNATC	1 cut(s)	567
BseLI	CCNNNNNNNGG	1 cut(s)	692
BseMI	GCAATG	2 cut(s)	471, 894
BseMII	CTCAG	4 cut(s)	151, 186, 357, 846
BseNI	ACTGG	1 cut(s)	782
BseXI	GCAGC	8 cut(s)	85, 171, 204, 226, 359, 524, 679, 838
Bsh1236I	CGCG	2 cut(s)	360, 414
BshFI	GGCC	2 cut(s)	234, 685
BshNI	GGYRCC	1 cut(s)	226
BsiHKCI	CYCGRG	1 cut(s)	209
BsiSI	CCGG	1 cut(s)	230
BslI	CCNNNNNNNGG	1 cut(s)	692
BsmAI	GTCTC	1 cut(s)	191
BsnI	GGCC	2 cut(s)	234, 685
BsoBI	CYCGRG	1 cut(s)	209
Bsp119I	TTCGAA	1 cut(s)	753
Bsp143I	GATC	1 cut(s)	490
Bsp1720I	GCTNAGC	1 cut(s)	855
BspACI	CCGC	2 cut(s)	795, 899
BspANI	GGCC	2 cut(s)	234, 685
BspCNI	CTCAG	4 cut(s)	150, 187, 356, 847
BspFNI	CGCG	2 cut(s)	360, 414
BspLI	GGNNCC	1 cut(s)	228
BspMI	ACCTGC	1 cut(s)	417
BspOI	GCTAGC	1 cut(s)	291
BspQI	GCTCTTC	1 cut(s)	108
BspT104I	TTCGAA	1 cut(s)	753
BspT107I	GGYRCC	1 cut(s)	226
BsrDI	GCAATG	2 cut(s)	471, 894
BsrI	ACTGG	1 cut(s)	782
BssECI	CCNNGG	2 cut(s)	446, 679
BssMI	GATC	1 cut(s)	490
BssT1I	CCWWGG	1 cut(s)	679
Bst2UI	CCWGG	1 cut(s)	836
Bst4CI	ACNGT	1 cut(s)	878
Bst6I	CTCTTC	2 cut(s)	108, 424
BstBAI	YACGTR	1 cut(s)	717
BstBI	TTCGAA	1 cut(s)	753
BstC8I	GCNNGC	6 cut(s)	289, 352, 462, 503, 657, 770
BstDEI	CTNAG	6 cut(s)	137, 195, 343, 630, 823, 855
BstDSI	CCRYGG	1 cut(s)	446
BstF5I	GGATG	4 cut(s)	156, 514, 708, 821
BstFNI	CGCG	2 cut(s)	360, 414
BstHHI	GCGC	1 cut(s)	414
BstKTI	GATC	1 cut(s)	493
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	1 cut(s)	490
BstMWI	GCNNNNNNNGC	4 cut(s)	297, 366, 518, 726
BstNI	CCWGG	1 cut(s)	836
BstSCI	CCNGG	2 cut(s)	229, 834
BstUI	CGCG	2 cut(s)	360, 414
BstV1I	GCAGC	8 cut(s)	85, 171, 204, 226, 359, 524, 679, 838
BstV2I	GAAGAC	1 cut(s)	411
BstXI	CCANNNNNNTGG	1 cut(s)	245
BsuRI	GGCC	2 cut(s)	234, 685
BtgI	CCRYGG	1 cut(s)	446
BtsCI	GGATG	4 cut(s)	156, 514, 708, 821
BtsI	GCAGTG	1 cut(s)	846
BtsIMutI	CAGTG	3 cut(s)	192, 846, 874
BveI	ACCTGC	1 cut(s)	417
Cac8I	GCNNGC	6 cut(s)	289, 352, 462, 503, 657, 770
CaiI	CAGNNNCTG	1 cut(s)	350
CfoI	GCGC	1 cut(s)	414
Cfr13I	GGNCC	2 cut(s)	232, 683
Csp6I	GTAC	2 cut(s)	227, 636
CviAII	CATG	1 cut(s)	297
CviQI	GTAC	2 cut(s)	227, 636
DdeI	CTNAG	6 cut(s)	137, 195, 343, 630, 823, 855
DpnI	GATC	1 cut(s)	492
DpnII	GATC	1 cut(s)	490
Eam1104I	CTCTTC	2 cut(s)	108, 424
EarI	CTCTTC	2 cut(s)	108, 424
Eco130I	CCWWGG	1 cut(s)	679
Eco32I	GATATC	1 cut(s)	741
Eco72I	CACGTG	1 cut(s)	717
Eco88I	CYCGRG	1 cut(s)	209
EcoRI	GAATTC	1 cut(s)	696
EcoRII	CCWGG	1 cut(s)	834
EcoRV	GATATC	1 cut(s)	741
EcoT14I	CCWWGG	1 cut(s)	679
ErhI	CCWWGG	1 cut(s)	679
FaeI	CATG	1 cut(s)	300
FaiI	YATR	7 cut(s)	62, 298, 336, 809, 955, 960, 968
FalI	AAGNNNNNCTT	4 cut(s)	444, 476, 510, 542
FatI	CATG	1 cut(s)	296
Fnu4HI	GCNGC	9 cut(s)	99, 185, 215, 218, 348, 513, 668, 852, 900
FokI	GGATG	4 cut(s)	143, 521, 695, 828
Fsp4HI	GCNGC	9 cut(s)	99, 185, 215, 218, 348, 513, 668, 852, 900
FspBI	CTAG	2 cut(s)	288, 923
GlaI	GCGC	1 cut(s)	413
GluI	GCNGC	9 cut(s)	99, 185, 215, 218, 348, 513, 668, 852, 900
GsuI	CTGGAG	2 cut(s)	299, 857
HaeIII	GGCC	2 cut(s)	234, 685
HapII	CCGG	1 cut(s)	230
HhaI	GCGC	1 cut(s)	414
Hin1II	CATG	1 cut(s)	300
Hin6I	GCGC	1 cut(s)	412
HinP1I	GCGC	1 cut(s)	412
HinfI	GANTC	1 cut(s)	755
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	1 cut(s)	771
Hpy166II	GTNNAC	2 cut(s)	446, 846
Hpy188I	TCNGA	3 cut(s)	140, 483, 562
Hpy188III	TCNNGA	2 cut(s)	209, 316
Hpy8I	GTNNAC	2 cut(s)	446, 846
HpyAV	CCTTC	1 cut(s)	313
HpyCH4III	ACNGT	1 cut(s)	878
HpyCH4IV	ACGT	1 cut(s)	716
HpyCH4V	TGCA	4 cut(s)	464, 512, 605, 819
HpyF10VI	GCNNNNNNNGC	4 cut(s)	297, 366, 518, 726
HpyF3I	CTNAG	6 cut(s)	137, 195, 343, 630, 823, 855
HpySE526I	ACGT	1 cut(s)	716
Hsp92II	CATG	1 cut(s)	300
HspAI	GCGC	1 cut(s)	412
KpnI	GGTACC	1 cut(s)	230
Kzo9I	GATC	1 cut(s)	490
LguI	GCTCTTC	1 cut(s)	108
LmnI	GCTCC	1 cut(s)	838
Lsp1109I	GCAGC	8 cut(s)	85, 171, 204, 226, 359, 524, 679, 838
LweI	GCATC	6 cut(s)	165, 447, 499, 614, 717, 806
MaeI	CTAG	2 cut(s)	288, 923
MaeII	ACGT	1 cut(s)	716
MaeIII	GTNAC	1 cut(s)	878
MalI	GATC	1 cut(s)	492
MboI	GATC	1 cut(s)	490
MboII	GAAGA	8 cut(s)	95, 195, 416, 441, 518, 524, 563, 563
MmeI	TCCRAC	2 cut(s)	73, 793
MroXI	GAANNNNTTC	2 cut(s)	522, 759
MseI	TTAA	2 cut(s)	440, 545
MslI	CAYNNNNRTG	1 cut(s)	806
MspA1I	CMGCKG	2 cut(s)	217, 350
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	2 cut(s)	231, 836
MvaI	CCWGG	1 cut(s)	836
MvnI	CGCG	2 cut(s)	360, 414
MwoI	GCNNNNNNNGC	4 cut(s)	297, 366, 518, 726
NciI	CCSGG	1 cut(s)	231
NdeII	GATC	1 cut(s)	490
NheI	GCTAGC	1 cut(s)	287
NlaIII	CATG	1 cut(s)	300
NlaIV	GGNNCC	1 cut(s)	228
NspV	TTCGAA	1 cut(s)	753
PciSI	GCTCTTC	1 cut(s)	108
PdmI	GAANNNNTTC	2 cut(s)	522, 759
PfeI	GAWTC	1 cut(s)	755
PflMI	CCANNNNNTGG	1 cut(s)	692
PkrI	GCNGC	9 cut(s)	100, 186, 216, 219, 349, 514, 669, 853, 901
PmaCI	CACGTG	1 cut(s)	717
PmlI	CACGTG	1 cut(s)	717
Ppu21I	YACGTR	1 cut(s)	717
Psp6I	CCWGG	1 cut(s)	834
PspCI	CACGTG	1 cut(s)	717
PspGI	CCWGG	1 cut(s)	834
PspN4I	GGNNCC	1 cut(s)	228
PspPI	GGNCC	2 cut(s)	232, 683
PstNI	CAGNNNCTG	1 cut(s)	350
PvuII	CAGCTG	2 cut(s)	217, 350
RsaI	GTAC	2 cut(s)	228, 637
RsaNI	GTAC	2 cut(s)	227, 636
RseI	CAYNNNNRTG	1 cut(s)	806
SapI	GCTCTTC	1 cut(s)	108
SaqAI	TTAA	2 cut(s)	440, 545
SatI	GCNGC	9 cut(s)	99, 185, 215, 218, 348, 513, 668, 852, 900
Sau3AI	GATC	1 cut(s)	490
Sau96I	GGNCC	2 cut(s)	232, 683
ScrFI	CCNGG	2 cut(s)	231, 836
SfaNI	GCATC	6 cut(s)	165, 447, 499, 614, 717, 806
SfuI	TTCGAA	1 cut(s)	753
SmiMI	CAYNNNNRTG	1 cut(s)	806
SsiI	CCGC	2 cut(s)	795, 899
SspMI	CTAG	2 cut(s)	288, 923
StyD4I	CCNGG	2 cut(s)	229, 834
StyI	CCWWGG	1 cut(s)	679
TaaI	ACNGT	1 cut(s)	878
TaiI	ACGT	1 cut(s)	719
TaqI	TCGA	3 cut(s)	83, 489, 753
TauI	GCSGC	1 cut(s)	902
TfiI	GAWTC	1 cut(s)	755
Tru1I	TTAA	2 cut(s)	440, 545
Tru9I	TTAA	2 cut(s)	440, 545
TscAI	CASTG	3 cut(s)	199, 853, 881
TseI	GCWGC	8 cut(s)	98, 184, 214, 217, 347, 512, 667, 851
TspDTI	ATGAA	4 cut(s)	17, 78, 285, 518
TspGWI	ACGGA	2 cut(s)	463, 653
TspRI	CASTG	3 cut(s)	199, 853, 881
Van91I	CCANNNNNTGG	1 cut(s)	692
XapI	RAATTY	6 cut(s)	22, 149, 484, 554, 696, 748
XmnI	GAANNNNTTC	2 cut(s)	522, 759
XspI	CTAG	2 cut(s)	288, 923

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.