Rorug02G0216000

Belongs to the peptidase C19 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010504
Physical Location & Seq
Forward (+)
20701273 .. 20701680
408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0216000.1

Sequence Viewer

Length: 315 bp
ATGATATTAGATCTTTCTGGTTTGCCATTCTTTTGGGCATTAAGGAACCTACCACCAAGTGAGGAAGGAGAATCGCTAAAACTACCGGATGACTTTGAGCAGCGAACTAAAGGTCGCTTGGGCTCCTCAGCTCAAAATCTTGGCCCACAAGTCAATTGGCATGGGCTTAATGCTAGGTTTTGGGACAAGAAGGTTGGGATTGAGGTGCCAAGAGACGAAGAGACTGGATCTTTTACGAGGAACACGGTGGCGGAGTCACCAAGTTTGGTTGTCAAGGATGAAGAGGGGAAGGCTTACAGAGATGGTGCCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04137 map04137
Pfam Domains
Protein Families
UCH

Protein Analysis

104

Amino Acids

11.62

Weight (kDa)

4.97

Isoelectric Point (pI)

44.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 205, 305
AciI CCGC 1 cut(s) 251
AclWI GGATC 1 cut(s) 235
AdeI CACNNNGTG 1 cut(s) 59
AluBI AGCT 1 cut(s) 131
AluI AGCT 1 cut(s) 131
Alw26I GTCTC 2 cut(s) 207, 215
AlwI GGATC 1 cut(s) 235
AoxI GGCC 1 cut(s) 142
ApeKI GCWGC 1 cut(s) 100
ArsI GACNNNNNNTTYG 2 cut(s) 97, 129
AspS9I GGNCC 1 cut(s) 143
AsuHPI GGTGA 1 cut(s) 249
BanI GGYRCC 2 cut(s) 205, 305
BanII GRGCYC 1 cut(s) 125
BbvCI CCTCAGC 1 cut(s) 127
BbvI GCAGC 1 cut(s) 112
BccI CCATC 1 cut(s) 296
BcoDI GTCTC 2 cut(s) 207, 215
BfaI CTAG 1 cut(s) 174
BglII AGATCT 1 cut(s) 10
BisI GCNGC 1 cut(s) 101
BlsI GCNGC 1 cut(s) 102
BmgT120I GGNCC 1 cut(s) 143
BmiI GGNNCC 4 cut(s) 47, 124, 207, 307
Bpu10I CCTNAGC 1 cut(s) 127
BsaWI WCCGGW 1 cut(s) 85
Bse1I ACTGG 1 cut(s) 229
BseGI GGATG 2 cut(s) 94, 283
BseMII CTCAG 1 cut(s) 141
BseNI ACTGG 1 cut(s) 229
BseRI GAGGAG 1 cut(s) 115
BseXI GCAGC 1 cut(s) 112
BshFI GGCC 1 cut(s) 144
BshNI GGYRCC 2 cut(s) 205, 305
BsiSI CCGG 1 cut(s) 86
BslFI GGGAC 1 cut(s) 197
BsmAI GTCTC 2 cut(s) 207, 215
BsmBI CGTCTC 1 cut(s) 207
BsmFI GGGAC 1 cut(s) 197
BsnI GGCC 1 cut(s) 144
Bsp1286I GDGCHC 1 cut(s) 125
Bsp143I GATC 2 cut(s) 10, 227
BspACI CCGC 1 cut(s) 251
BspANI GGCC 1 cut(s) 144
BspCNI CTCAG 1 cut(s) 140
BspLI GGNNCC 4 cut(s) 47, 124, 207, 307
BspPI GGATC 1 cut(s) 235
BspT107I GGYRCC 2 cut(s) 205, 305
BsrI ACTGG 1 cut(s) 229
BssMI GATC 2 cut(s) 10, 227
Bst4CI ACNGT 1 cut(s) 247
Bst6I CTCTTC 2 cut(s) 213, 276
BstDEI CTNAG 1 cut(s) 127
BstF5I GGATG 2 cut(s) 94, 283
BstKTI GATC 2 cut(s) 13, 230
BstMAI GTCTC 2 cut(s) 207, 215
BstMBI GATC 2 cut(s) 10, 227
BstV1I GCAGC 1 cut(s) 112
BstX2I RGATCY 2 cut(s) 10, 227
BstXI CCANNNNNNTGG 1 cut(s) 33
BstYI RGATCY 2 cut(s) 10, 227
BsuRI GGCC 1 cut(s) 144
BtsCI GGATG 2 cut(s) 94, 283
Cfr13I GGNCC 1 cut(s) 143
CviAII CATG 1 cut(s) 161
CviJI RGCY 5 cut(s) 123, 131, 144, 166, 293
CviKI_1 RGCY 5 cut(s) 123, 131, 144, 166, 293
DdeI CTNAG 1 cut(s) 127
DpnI GATC 2 cut(s) 12, 229
DpnII GATC 2 cut(s) 10, 227
DraIII CACNNNGTG 1 cut(s) 59
Eam1104I CTCTTC 2 cut(s) 213, 276
EarI CTCTTC 2 cut(s) 213, 276
EciI GGCGGA 1 cut(s) 266
Eco24I GRGCYC 1 cut(s) 125
EcoT38I GRGCYC 1 cut(s) 125
Esp3I CGTCTC 1 cut(s) 207
FaeI CATG 1 cut(s) 164
FaiI YATR 1 cut(s) 162
FaqI GGGAC 1 cut(s) 197
FatI CATG 1 cut(s) 160
Fnu4HI GCNGC 1 cut(s) 101
FokI GGATG 2 cut(s) 101, 290
FriOI GRGCYC 1 cut(s) 125
Fsp4HI GCNGC 1 cut(s) 101
FspBI CTAG 1 cut(s) 174
GluI GCNGC 1 cut(s) 101
HaeIII GGCC 1 cut(s) 144
HapII CCGG 1 cut(s) 86
Hin1II CATG 1 cut(s) 164
HinfI GANTC 2 cut(s) 71, 254
HpaII CCGG 1 cut(s) 86
HphI GGTGA 1 cut(s) 249
HpyAV CCTTC 3 cut(s) 59, 184, 283
HpyCH4III ACNGT 1 cut(s) 247
HpyF3I CTNAG 1 cut(s) 127
Hsp92II CATG 1 cut(s) 164
Kzo9I GATC 2 cut(s) 10, 227
LmnI GCTCC 1 cut(s) 128
LpnPI CCDG 3 cut(s) 3, 99, 210
Lsp1109I GCAGC 1 cut(s) 112
MaeI CTAG 1 cut(s) 174
MaeIII GTNAC 1 cut(s) 255
MalI GATC 2 cut(s) 12, 229
MboI GATC 2 cut(s) 10, 227
MboII GAAGA 2 cut(s) 230, 293
MfeI CAATTG 1 cut(s) 154
MflI RGATCY 2 cut(s) 10, 227
MhlI GDGCHC 1 cut(s) 125
MluCI AATT 2 cut(s) 154, 310
MlyI GAGTC 1 cut(s) 263
MnlI CCTC 5 cut(s) 55, 136, 196, 231, 277
MseI TTAA 3 cut(s) 41, 168, 313
MspI CCGG 1 cut(s) 86
MunI CAATTG 1 cut(s) 154
NdeII GATC 2 cut(s) 10, 227
NlaIII CATG 1 cut(s) 164
NlaIV GGNNCC 4 cut(s) 47, 124, 207, 307
NmuCI GTSAC 1 cut(s) 255
PfeI GAWTC 1 cut(s) 71
PkrI GCNGC 1 cut(s) 102
PleI GAGTC 1 cut(s) 262
PpsI GAGTC 1 cut(s) 262
PspN4I GGNNCC 4 cut(s) 47, 124, 207, 307
PspPI GGNCC 1 cut(s) 143
PsuI RGATCY 2 cut(s) 10, 227
SaqAI TTAA 3 cut(s) 41, 168, 313
SatI GCNGC 1 cut(s) 101
Sau3AI GATC 2 cut(s) 10, 227
Sau96I GGNCC 1 cut(s) 143
SchI GAGTC 1 cut(s) 263
SduI GDGCHC 1 cut(s) 125
SetI ASST 6 cut(s) 51, 115, 133, 179, 195, 207
Sse9I AATT 2 cut(s) 154, 310
SsiI CCGC 1 cut(s) 251
SspMI CTAG 1 cut(s) 174
TaaI ACNGT 1 cut(s) 247
TasI AATT 2 cut(s) 154, 310
TfiI GAWTC 1 cut(s) 71
Tru1I TTAA 3 cut(s) 41, 168, 313
Tru9I TTAA 3 cut(s) 41, 168, 313
TseFI GTSAC 1 cut(s) 255
TseI GCWGC 1 cut(s) 100
Tsp45I GTSAC 1 cut(s) 255
TspDTI ATGAA 1 cut(s) 294
XcmI CCANNNNNNNNNTGG 1 cut(s) 153
XspI CTAG 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.