FvH4_1g23260

Belongs to the peptidase C19 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0010504
Physical Location & Seq
Reverse (-)
15116038 .. 15121480
5443 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g23260.t3

Sequence Viewer

Length: 1608 bp
ATGAAGTTCGAAGGAGATGTCACTCTAAACTCATTGGTTCGCCGATTCCAACATGGGTTTACCACACTTTCTCGTTCTTCTGGTCTTCACTTATCTGTGACTGGTCTTCTGGGTATTGCTGGCCTCGTTCTGGCTCTCAAAGACTCCAAATTGGGCAAGCTCAGCAACTTACAGTGGCTACCCAAGAACCATCATGGTGAACCCAACTTTCTTTTGGTGCCTGGCTTGCAAAACCTCGGGAAAAATTGTTTCTTGAATGTGATTTTGCAGGCTCTGGCTAGTTGTTCATACTTTCAACCTTTTCTTGAAAAGATTTTAGAGGAGTCTGAGGTCTTAGCAGTTGAGGATTCCTCAGATTGCGTGCCGCTTACAATATCTTTGGCTGCATTGTTTGAAGAACTATGTGCAGTAGGTGGAGGAAGAGTTGTATTGAGTCCACGGCAAGTGATGTTTGCGATGGCACATTACATTGAGAACTTTGATCTAACTAGTGAGCAGGATGCTGCAGAAGCATTTCTTCACCTTCTGTCGTCTTTAAGAGAAGAATTCTCAGATTTTTATTGTCCAAATCAAGGTTCTATAGTGGAAGTCTTAGCCTCTAATGGTAGGATTATTACTCCAAAGAGAGTGGAGAGCCAAAGTGAGCAGGAAAGATGGAAGCAACACTTCTTTGGACCATTTGATGGAATTCTTGGCAGTATCCTAACATGTCGAAGTTGTTCATCGGAGATATCATTGAACTTTGAATCTTTTCACAGCTTGCCTCTTTCACCGGTGCTTAATGGTGGTGCCACAATTATGGCTGGATGTACCTTAGAGGATTGCCTGAAGCAATTCACTGCTGCTGAGCAAGTTCAGAATTACCGCTGCAGCCATTGTTGGCATATTGCTGCAGTCAAATATTTATTATCTATGGGAGGAAATGAGACAGCAGTTGAAAAGATCGAGTGTTGCACCGAGGAAAATTCCTGTGACTGTCAAAGACTTTTTCATCTAGAAACACTACCATGGTCAAATAGATTTTCACGTACTTTAAAGCAAATAAGTATTGCTCGCTGTCCAAAGATTTTGTGCATTCACCTAAAACGCGTTTCAGTCAATGTATTTGGAGAATTCGTAAAACTTCGGGGCCATATTTCTTTTCCATTGGTTTTGGACCTTTCAAGTTTCATGACAAGTAGGGTGGGAATAAAGAGTGGGGAGAAAAACTGGAAAACTGGACGAGTCCAACTACAAAGTGAAAACCCTAGTCCTCAGCCCAATCATTTCAACTTAGAGTATGATCCAAGAAGGTTAAATATTGTCCAGGGACTAGCAAGAGGATGCACCTACCAAGAGTTGAATACGAGTTGTGACTCAGTTCCTTTGGATATGTGTTTGTACCGTCTTGTTGCTGTTGTGGAGCACTTTGGAAGAGCCGGAAGTGGGCATTACACTGTTTATAGAAGTGTCTGGGTTGATTTATGTGGGGAACAACCTGGTGATCAATTTGACGCTTCTACTGCCCGCTGGTTTTCTATTTCAGATGCAGAGGTGTGCAGTGTGTCAAAGGAACATGTCCTTGGTGCAGAAGCTAGCTTGCTTTTCTATGAAAGGTATCAAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04137 map04137
Pfam Domains
Protein Families
UCH

Protein Analysis

536

Amino Acids

59.65

Weight (kDa)

5.96

Isoelectric Point (pI)

54.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UCH PF00443 75 - 394 1.6e-28 Ubiquitin carboxyl-terminal hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 217, 788
AccB7I CCANNNNNTGG 1 cut(s) 683
AccII CGCG 1 cut(s) 1089
AciI CCGC 3 cut(s) 365, 865, 1507
AclWI GGATC 1 cut(s) 1277
AcsI RAATTY 4 cut(s) 545, 687, 964, 1112
AcuI CTGAAG 1 cut(s) 848
AfaI GTAC 3 cut(s) 811, 1030, 1382
AfiI CCNNNNNNNGG 4 cut(s) 130, 572, 683, 1425
AflIII ACRYGT 3 cut(s) 707, 1087, 1555
AgeI ACCGGT 1 cut(s) 772
AhlI ACTAGT 1 cut(s) 488
AjnI CCWGG 3 cut(s) 220, 1305, 1477
AjuI GAANNNNNNNTTGG 4 cut(s) 559, 591, 1545, 1577
AluBI AGCT 4 cut(s) 160, 759, 1574, 1578
AluI AGCT 4 cut(s) 160, 759, 1574, 1578
Alw21I GWGCWC 1 cut(s) 1407
Alw26I GTCTC 1 cut(s) 920
AlwI GGATC 1 cut(s) 1277
AlwNI CAGNNNCTG 1 cut(s) 274
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 2 cut(s) 121, 1129
ApeKI GCWGC 6 cut(s) 383, 503, 842, 867, 870, 890
ApoI RAATTY 4 cut(s) 545, 687, 964, 1112
ArsI GACNNNNNNTTYG 1 cut(s) 35
AsiGI ACCGGT 1 cut(s) 772
Asp700I GAANNNNTTC 4 cut(s) 513, 718, 750, 833
AspS9I GGNCC 3 cut(s) 674, 1129, 1156
AsuHPI GGTGA 5 cut(s) 209, 512, 762, 1070, 1493
AsuII TTCGAA 1 cut(s) 9
AsuNHI GCTAGC 1 cut(s) 1574
AvaI CYCGRG 1 cut(s) 236
AvaII GGWCC 2 cut(s) 674, 1156
BanI GGYRCC 2 cut(s) 217, 788
BbsI GAAGAC 2 cut(s) 77, 98
Bbv12I GWGCWC 1 cut(s) 1407
BbvCI CCTCAGC 1 cut(s) 1254
BbvI GCAGC 6 cut(s) 370, 490, 829, 854, 877, 882
BccI CCATC 4 cut(s) 198, 451, 648, 677
BceAI ACGGC 1 cut(s) 455
BciT130I CCWGG 3 cut(s) 222, 1307, 1479
BciVI GTATCC 1 cut(s) 710
BclI TGATCA 1 cut(s) 1483
BcoDI GTCTC 1 cut(s) 920
BcuI ACTAGT 1 cut(s) 488
BfaI CTAG 7 cut(s) 279, 489, 995, 1248, 1313, 1575, 1606
BfmI CTRYAG 4 cut(s) 504, 579, 868, 891
BfuI GTATCC 1 cut(s) 710
BisI GCNGC 7 cut(s) 365, 384, 504, 843, 868, 871, 891
BlpI GCTNAGC 2 cut(s) 161, 846
BlsI GCNGC 7 cut(s) 366, 385, 505, 844, 869, 872, 892
Bme1390I CCNGG 3 cut(s) 222, 1307, 1479
Bme18I GGWCC 2 cut(s) 674, 1156
BmeT110I CYCGRG 1 cut(s) 236
BmgT120I GGNCC 3 cut(s) 674, 1129, 1156
BmiI GGNNCC 3 cut(s) 219, 790, 1130
BmrFI CCNGG 3 cut(s) 222, 1307, 1479
BmsI GCATC 3 cut(s) 490, 1313, 1516
BmtI GCTAGC 1 cut(s) 1578
BpiI GAAGAC 2 cut(s) 77, 98
BplI GAGNNNNNCTC 2 cut(s) 335, 367
Bpu10I CCTNAGC 1 cut(s) 1254
Bpu1102I GCTNAGC 2 cut(s) 161, 846
Bpu14I TTCGAA 1 cut(s) 9
BsaAI YACGTR 1 cut(s) 1028
BsaJI CCNNGG 6 cut(s) 235, 437, 957, 1007, 1306, 1561
BsaWI WCCGGW 1 cut(s) 772
BsaXI ACNNNNNCTCC 4 cut(s) 408, 438, 1101, 1131
Bsc4I CCNNNNNNNGG 4 cut(s) 130, 572, 683, 1425
Bse118I RCCGGY 1 cut(s) 772
Bse1I ACTGG 3 cut(s) 106, 1214, 1222
BseBI CCWGG 3 cut(s) 222, 1307, 1479
BseDI CCNNGG 6 cut(s) 235, 437, 957, 1007, 1306, 1561
BseGI GGATG 3 cut(s) 505, 812, 1328
BseLI CCNNNNNNNGG 4 cut(s) 130, 572, 683, 1425
BseMII CTCAG 7 cut(s) 175, 318, 366, 564, 837, 1268, 1371
BseNI ACTGG 3 cut(s) 106, 1214, 1222
BseRI GAGGAG 1 cut(s) 335
BseXI GCAGC 6 cut(s) 370, 490, 829, 854, 877, 882
BsgI GTGCAG 3 cut(s) 426, 1558, 1587
Bsh1236I CGCG 1 cut(s) 1089
BshFI GGCC 2 cut(s) 123, 1131
BshNI GGYRCC 2 cut(s) 217, 788
BshTI ACCGGT 1 cut(s) 772
BsiHKAI GWGCWC 1 cut(s) 1407
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 2 cut(s) 773, 1419
BslFI GGGAC 1 cut(s) 1323
BslI CCNNNNNNNGG 4 cut(s) 130, 572, 683, 1425
BsmAI GTCTC 1 cut(s) 920
BsmFI GGGAC 1 cut(s) 1323
BsmI GAATGC 1 cut(s) 1074
BsnI GGCC 2 cut(s) 123, 1131
BsoBI CYCGRG 1 cut(s) 236
Bsp119I TTCGAA 1 cut(s) 9
Bsp1286I GDGCHC 1 cut(s) 1407
Bsp143I GATC 4 cut(s) 481, 942, 1282, 1483
Bsp1720I GCTNAGC 2 cut(s) 161, 846
Bsp19I CCATGG 1 cut(s) 1007
BspACI CCGC 3 cut(s) 365, 865, 1507
BspANI GGCC 2 cut(s) 123, 1131
BspCNI CTCAG 7 cut(s) 174, 319, 365, 563, 838, 1267, 1370
BspFNI CGCG 1 cut(s) 1089
BspHI TCATGA 1 cut(s) 1170
BspLI GGNNCC 3 cut(s) 219, 790, 1130
BspMAI CTGCAG 3 cut(s) 508, 872, 895
BspOI GCTAGC 1 cut(s) 1578
BspPI GGATC 1 cut(s) 1277
BspQI GCTCTTC 1 cut(s) 1408
BspT104I TTCGAA 1 cut(s) 9
BspT107I GGYRCC 2 cut(s) 217, 788
BsrFI RCCGGY 1 cut(s) 772
BsrI ACTGG 3 cut(s) 106, 1214, 1222
BssAI RCCGGY 1 cut(s) 772
BssECI CCNNGG 6 cut(s) 235, 437, 957, 1007, 1306, 1561
BssMI GATC 4 cut(s) 481, 942, 1282, 1483
BssT1I CCWWGG 2 cut(s) 1007, 1561
Bst2UI CCWGG 3 cut(s) 222, 1307, 1479
Bst4CI ACNGT 4 cut(s) 174, 977, 1385, 1438
Bst6I CTCTTC 2 cut(s) 415, 1408
BstBAI YACGTR 1 cut(s) 1028
BstBI TTCGAA 1 cut(s) 9
BstDSI CCRYGG 2 cut(s) 437, 1007
BstF5I GGATG 3 cut(s) 505, 812, 1328
BstFNI CGCG 1 cut(s) 1089
BstKTI GATC 4 cut(s) 484, 945, 1285, 1486
BstMAI GTCTC 1 cut(s) 920
BstMBI GATC 4 cut(s) 481, 942, 1282, 1483
BstMWI GCNNNNNNNGC 4 cut(s) 162, 226, 509, 1502
BstNI CCWGG 3 cut(s) 222, 1307, 1479
BstNSI RCATGY 2 cut(s) 711, 1559
BstSCI CCNGG 3 cut(s) 220, 1305, 1477
BstSFI CTRYAG 4 cut(s) 504, 579, 868, 891
BstUI CGCG 1 cut(s) 1089
BstV1I GCAGC 6 cut(s) 370, 490, 829, 854, 877, 882
BstV2I GAAGAC 2 cut(s) 77, 98
BstXI CCANNNNNNTGG 1 cut(s) 799
BsuI GTATCC 1 cut(s) 710
BsuRI GGCC 2 cut(s) 123, 1131
BtgI CCRYGG 2 cut(s) 437, 1007
BtgZI GCGATG 1 cut(s) 470
BtsCI GGATG 3 cut(s) 505, 812, 1328
BtsI GCAGTG 2 cut(s) 837, 1546
BtsIMutI CAGTG 4 cut(s) 179, 837, 1434, 1546
CaiI CAGNNNCTG 1 cut(s) 274
CciI TCATGA 1 cut(s) 1170
Cfr10I RCCGGY 1 cut(s) 772
Cfr13I GGNCC 3 cut(s) 674, 1129, 1156
CseI GACGC 1 cut(s) 1502
CsiI ACCWGGT 1 cut(s) 1477
Csp6I GTAC 3 cut(s) 810, 1029, 1381
CspAI ACCGGT 1 cut(s) 772
CspCI CAANNNNNGTGG 4 cut(s) 609, 644, 1164, 1199
CviAII CATG 6 cut(s) 53, 194, 708, 1008, 1171, 1556
CviQI GTAC 3 cut(s) 810, 1029, 1381
DpnI GATC 4 cut(s) 483, 944, 1284, 1485
DpnII GATC 4 cut(s) 481, 942, 1282, 1483
DraI TTTAAA 1 cut(s) 1035
Eam1104I CTCTTC 2 cut(s) 415, 1408
EarI CTCTTC 2 cut(s) 415, 1408
Eco130I CCWWGG 2 cut(s) 1007, 1561
Eco32I GATATC 1 cut(s) 732
Eco47I GGWCC 2 cut(s) 674, 1156
Eco57I CTGAAG 1 cut(s) 848
Eco88I CYCGRG 1 cut(s) 236
EcoRI GAATTC 3 cut(s) 545, 687, 1112
EcoRII CCWGG 3 cut(s) 220, 1305, 1477
EcoRV GATATC 1 cut(s) 732
EcoT14I CCWWGG 2 cut(s) 1007, 1561
ErhI CCWWGG 2 cut(s) 1007, 1561
FaeI CATG 6 cut(s) 56, 197, 711, 1011, 1174, 1559
FalI AAGNNNNNCTT 4 cut(s) 501, 533, 650, 682
FaqI GGGAC 1 cut(s) 1323
FatI CATG 6 cut(s) 52, 193, 707, 1007, 1170, 1555
FauI CCCGC 1 cut(s) 1514
FbaI TGATCA 1 cut(s) 1483
Fnu4HI GCNGC 7 cut(s) 365, 384, 504, 843, 868, 871, 891
FokI GGATG 3 cut(s) 512, 819, 1335
Fsp4HI GCNGC 7 cut(s) 365, 384, 504, 843, 868, 871, 891
FspBI CTAG 7 cut(s) 279, 489, 995, 1248, 1313, 1575, 1606
GluI GCNGC 7 cut(s) 365, 384, 504, 843, 868, 871, 891
HaeIII GGCC 2 cut(s) 123, 1131
HapII CCGG 2 cut(s) 773, 1419
HgaI GACGC 1 cut(s) 1502
Hin1II CATG 6 cut(s) 56, 197, 711, 1011, 1174, 1559
HinfI GANTC 8 cut(s) 45, 143, 323, 347, 433, 746, 1224, 1355
HpaII CCGG 2 cut(s) 773, 1419
HphI GGTGA 5 cut(s) 209, 512, 762, 1070, 1493
Hpy166II GTNNAC 3 cut(s) 60, 200, 437
Hpy188I TCNGA 6 cut(s) 328, 355, 553, 727, 858, 1525
Hpy188III TCNNGA 5 cut(s) 238, 253, 305, 995, 1171
Hpy8I GTNNAC 3 cut(s) 60, 200, 437
HpyAV CCTTC 3 cut(s) 5, 533, 1284
HpyCH4III ACNGT 4 cut(s) 174, 977, 1385, 1438
HpyCH4IV ACGT 1 cut(s) 1027
HpyF10VI GCNNNNNNNGC 4 cut(s) 162, 226, 509, 1502
HpySE526I ACGT 1 cut(s) 1027
Hsp92II CATG 6 cut(s) 56, 197, 711, 1011, 1174, 1559
Ksp22I TGATCA 1 cut(s) 1483
Kzo9I GATC 4 cut(s) 481, 942, 1282, 1483
LguI GCTCTTC 1 cut(s) 1408
LmnI GCTCC 1 cut(s) 1402
Lsp1109I GCAGC 6 cut(s) 370, 490, 829, 854, 877, 882
LweI GCATC 3 cut(s) 490, 1313, 1516
MabI ACCWGGT 1 cut(s) 1477
MaeI CTAG 7 cut(s) 279, 489, 995, 1248, 1313, 1575, 1606
MaeII ACGT 1 cut(s) 1027
MaeIII GTNAC 4 cut(s) 19, 97, 971, 1352
MalI GATC 4 cut(s) 483, 944, 1284, 1485
MboI GATC 4 cut(s) 481, 942, 1282, 1483
MboII GAAGA 8 cut(s) 69, 77, 98, 407, 432, 509, 554, 1425
MhlI GDGCHC 1 cut(s) 1407
MluI ACGCGT 1 cut(s) 1087
MlyI GAGTC 5 cut(s) 137, 332, 442, 1233, 1349
MmeI TCCRAC 2 cut(s) 73, 1252
MroXI GAANNNNTTC 4 cut(s) 513, 718, 750, 833
MseI TTAA 4 cut(s) 536, 780, 1034, 1295
MslI CAYNNNNRTG 3 cut(s) 195, 797, 1006
MspA1I CMGCKG 2 cut(s) 867, 1509
MspI CCGG 2 cut(s) 773, 1419
MspR9I CCNGG 3 cut(s) 222, 1307, 1479
Mva1269I GAATGC 1 cut(s) 1074
MvaI CCWGG 3 cut(s) 222, 1307, 1479
MvnI CGCG 1 cut(s) 1089
MwoI GCNNNNNNNGC 4 cut(s) 162, 226, 509, 1502
NcoI CCATGG 1 cut(s) 1007
NdeII GATC 4 cut(s) 481, 942, 1282, 1483
NheI GCTAGC 1 cut(s) 1574
NlaIII CATG 6 cut(s) 56, 197, 711, 1011, 1174, 1559
NlaIV GGNNCC 3 cut(s) 219, 790, 1130
NmuCI GTSAC 4 cut(s) 19, 97, 971, 1352
NspI RCATGY 2 cut(s) 711, 1559
NspV TTCGAA 1 cut(s) 9
PagI TCATGA 1 cut(s) 1170
PciI ACATGT 2 cut(s) 707, 1555
PciSI GCTCTTC 1 cut(s) 1408
PctI GAATGC 1 cut(s) 1074
PdmI GAANNNNTTC 4 cut(s) 513, 718, 750, 833
PfeI GAWTC 3 cut(s) 45, 347, 746
PflMI CCANNNNNTGG 1 cut(s) 683
PinAI ACCGGT 1 cut(s) 772
PkrI GCNGC 7 cut(s) 366, 385, 505, 844, 869, 872, 892
PleI GAGTC 5 cut(s) 137, 331, 441, 1232, 1349
PpsI GAGTC 5 cut(s) 137, 331, 441, 1232, 1349
Ppu21I YACGTR 1 cut(s) 1028
PscI ACATGT 2 cut(s) 707, 1555
Psp6I CCWGG 3 cut(s) 220, 1305, 1477
PspGI CCWGG 3 cut(s) 220, 1305, 1477
PspN4I GGNNCC 3 cut(s) 219, 790, 1130
PspPI GGNCC 3 cut(s) 674, 1129, 1156
PstI CTGCAG 3 cut(s) 508, 872, 895
PstNI CAGNNNCTG 1 cut(s) 274
RsaI GTAC 3 cut(s) 811, 1030, 1382
RsaNI GTAC 3 cut(s) 810, 1029, 1381
RseI CAYNNNNRTG 3 cut(s) 195, 797, 1006
SapI GCTCTTC 1 cut(s) 1408
SaqAI TTAA 4 cut(s) 536, 780, 1034, 1295
SatI GCNGC 7 cut(s) 365, 384, 504, 843, 868, 871, 891
Sau3AI GATC 4 cut(s) 481, 942, 1282, 1483
Sau96I GGNCC 3 cut(s) 674, 1129, 1156
SchI GAGTC 5 cut(s) 137, 332, 442, 1233, 1349
ScrFI CCNGG 3 cut(s) 222, 1307, 1479
SduI GDGCHC 1 cut(s) 1407
SexAI ACCWGGT 1 cut(s) 1477
SfaNI GCATC 3 cut(s) 490, 1313, 1516
SfcI CTRYAG 4 cut(s) 504, 579, 868, 891
SfuI TTCGAA 1 cut(s) 9
SgrAI CRCCGGYG 1 cut(s) 772
SinI GGWCC 2 cut(s) 674, 1156
SmiMI CAYNNNNRTG 3 cut(s) 195, 797, 1006
SpeI ACTAGT 1 cut(s) 488
SsiI CCGC 3 cut(s) 365, 865, 1507
SspI AATATT 2 cut(s) 902, 1300
SspMI CTAG 7 cut(s) 279, 489, 995, 1248, 1313, 1575, 1606
StyD4I CCNGG 3 cut(s) 220, 1305, 1477
StyI CCWWGG 2 cut(s) 1007, 1561
TaaI ACNGT 4 cut(s) 174, 977, 1385, 1438
TaiI ACGT 1 cut(s) 1030
TaqI TCGA 3 cut(s) 9, 712, 945
TauI GCSGC 1 cut(s) 367
TfiI GAWTC 3 cut(s) 45, 347, 746
Tru1I TTAA 4 cut(s) 536, 780, 1034, 1295
Tru9I TTAA 4 cut(s) 536, 780, 1034, 1295
TscAI CASTG 4 cut(s) 179, 844, 1441, 1546
TseFI GTSAC 4 cut(s) 19, 97, 971, 1352
TseI GCWGC 6 cut(s) 383, 503, 842, 867, 870, 890
Tsp45I GTSAC 4 cut(s) 19, 97, 971, 1352
TspDTI ATGAA 6 cut(s) 17, 276, 711, 980, 1159, 1605
TspRI CASTG 4 cut(s) 179, 844, 1441, 1546
Van91I CCANNNNNTGG 1 cut(s) 683
VpaK11BI GGWCC 2 cut(s) 674, 1156
XapI RAATTY 4 cut(s) 545, 687, 964, 1112
XbaI TCTAGA 1 cut(s) 994
XceI RCATGY 2 cut(s) 711, 1559
XcmI CCANNNNNNNNNTGG 1 cut(s) 211
XmnI GAANNNNTTC 4 cut(s) 513, 718, 750, 833
XspI CTAG 7 cut(s) 279, 489, 995, 1248, 1313, 1575, 1606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.