Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0010504

Physical Location & Seq

Genomic Coordinates Forward (+)

16712601 .. 16719175

Gene Structure 6575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G165900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1722 bp

ATGATCTTTGAAAAAGAGGTAACTTTGAAGTCCTTGATTCGCCAATTCGAACATGGGTTTAAGGCTCTTTCTCGTTCGAACTTGATTTCATCTTCTGGGTTTCACATATCTGTGGCTGGTCTTCTGGGTATTGCTGGTTTTGTTTTAGCTCTCAAAGACTCGAAATTGAGCAGGCTAAGCAGCTTAGACTGGCTGCCCAAGACTGACAATGGTTCTCCGAAGCTGCGCTTGGTACCTGGCTTGCAAAACCTTGGAAATAATTGTTTTCTTAATGTGATTTTACAGGCTCTGGCTAGCTGTTCATACTTTCAACCCTTTCTTCAAAAGGTTTTAGAGGAATATGAGTTCTCAGCAGTTGAGGATGAGGTTTCTGGCTTTCCTCTTGCAATAGCATTGGCTGCTTTATTAGAAGATTTACGTGTAGTTGGTGGAGGAAGAGTTGTATTAAGTCCACGAAGAGTCATGCTTGCAATGGCACATTATATTCAGAATTTCGATCTAACAAGCCAGCAGGATGCAGCAGAAGCATTTCTTCATCTTCTGTCCTCTTTAAGAGAAGAATTTTCAGATTGTTATCTTCCAAATCAATGTTCTTTAGTAGAAGTATTTGCTTCTAATTGTAGGATTATTACTCCAAAGAGAATGGAGAACCAGAGTGAACAGGCAAGATGGCAACAACACTACCTTGGACCATTTGATGGAATTCTGGGTAGCATCCTAACATGTCAAAGTTGTTCATCGCAGATATCATTGAATTTGGAATCTTTTCATAGTTTGCCTCTTTCGCCAGTTCTTGATGGTGGTGAGACAATTATGGTTGGATGTAACCTGGAGGATTGCCTGAAGCAGTTTACTATTGCTGAAAGAGTTGAGAATTACCATTGTAACCATTGTTGGCATATTGCTGCGGTCAAGTATTTATTTGCTAGAGGAGTAAATGAGGCAGATATTGAAAAGATTAAGAGATGCACTGAGCAAGATTCCTGTGACTGTCGAAGACTTTTTCATCTAGATAAGCTACCGTGGTCAAATAAATTTTCATGTACTCTCAAGCAAATAAGTGTTGCTCGTTGCCCAAAGATTCTGTGCATTCATCTTAAACGTGTTTCAATCAATGTATTTGGAGAACTTGTAAAACTTCAGGGCTGTATTTCTTTTCCATTGGTTTTGGACCTTTCACAGTTCACAACAAGTGGGTCAGAAATAAACAGTTGGGAAGACAACATGAGAAGAGGGCAAGCTCAGGGACAAAGTAGAAACCCAAGCACTCGTTCCAATCAGTTCACTATGCAGTATGATCAGAGAAAGCATAATAATGTCTATGGATTAACGAGAGGAGGAATATCAGAAGAATTAGCTTCAGATATATCTCGATTCGCTGCAAATGCACAAGATTTACCAGGAGAATCCAGCTTTCCCCAAACTGCAGGGTTTTCAAAAACCATGCACTCAGGAGGAGATCAGTGGTCTAAGAGTTGCGAAGATCCTTGTTTGTACCATCTTGTTGCTGTTGTTGAGCATTTTGGAAGAGCTGGAAGTGGGCATTACACTGTTTACAGAAGCGTGAGAGCTGATTTATGCGAGGAAGAATCTGATGATCAGTTTGAGGCTGCTGCTCCGTGCTGGTTTTCTATTTCAGATTCAGAAGTGTGTCGTGTCTCAAAGGAAGCTGTTCTTGCTGCAGAAGCTAGCTTGCTCTTCTATGAAAAAAATGAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

UCH

Protein Analysis

574

Amino Acids

63.93

Weight (kDa)

5.78

Isoelectric Point (pI)

56.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010504)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39370 AT4G39370 AT4G39370
fragaria_vesca	FvH4_1g23260 FvH4_1g23260 FvH4_1g23260 FvH4_1g23260
malus_domestica	MD01G1015800.v1.1
prunus_persica	Prupe.6G165900_v2.0.a1 Prupe.6G165900_v2.0.a1
pyrus_communis	pycom15g29020
rosa_chinensis	RchiOBHm_Chr2g0118111
rosa_laevigata	RLG00000018391
rosa_roxburghii	Rroxscaffold_2G00125970
rosa_rugosa	Rorug02G0216000 Rorug02G0216100
rosa_samantha	Rh2AG273100 Rh2BG284900 Rh2DG280800 Rh2DG299100
rosa_wichuraiana	Rw2G021560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	232
AccB1I	GGYRCC	1 cut(s)	232
AccB7I	CCANNNNNTGG	1 cut(s)	698
AciI	CCGC	1 cut(s)	908
AclWI	GGATC	1 cut(s)	1478
AcsI	RAATTY	5 cut(s)	490, 560, 702, 754, 1034
AcuI	CTGAAG	3 cut(s)	863, 1124, 1344
AfaI	GTAC	3 cut(s)	234, 1045, 1496
AfiI	CCNNNNNNNGG	1 cut(s)	698
AflIII	ACRYGT	3 cut(s)	418, 722, 1102
AgsI	TTSAA	8 cut(s)	11, 28, 311, 323, 754, 953, 1110, 1437
AjnI	CCWGG	3 cut(s)	235, 828, 1399
AjuI	GAANNNNNNNTTGG	6 cut(s)	212, 244, 574, 606, 1255, 1287
AloI	GAACNNNNNNTCC	2 cut(s)	329, 361
Alw26I	GTCTC	2 cut(s)	800, 1663
AlwI	GGATC	1 cut(s)	1478
AlwNI	CAGNNNCTG	1 cut(s)	289
ApoI	RAATTY	5 cut(s)	490, 560, 702, 754, 1034
Asp700I	GAANNNNTTC	3 cut(s)	528, 765, 1671
Asp718I	GGTACC	1 cut(s)	232
AspLEI	GCGC	1 cut(s)	228
AspS9I	GGNCC	2 cut(s)	689, 1171
AsuHPI	GGTGA	1 cut(s)	815
AsuII	TTCGAA	2 cut(s)	48, 77
AsuNHI	GCTAGC	2 cut(s)	293, 1688
AvaII	GGWCC	2 cut(s)	689, 1171
BanI	GGYRCC	1 cut(s)	232
BbsI	GAAGAC	3 cut(s)	113, 1003, 1224
BccI	CCATC	4 cut(s)	663, 692, 791, 1506
BciT130I	CCWGG	3 cut(s)	237, 830, 1401
BclI	TGATCA	2 cut(s)	1297, 1597
BcoDI	GTCTC	2 cut(s)	800, 1663
BfaI	CTAG	4 cut(s)	294, 927, 1010, 1689
BfmI	CTRYAG	2 cut(s)	1425, 1680
BlpI	GCTNAGC	1 cut(s)	176
Bme1390I	CCNGG	3 cut(s)	237, 830, 1401
Bme18I	GGWCC	2 cut(s)	689, 1171
BmgT120I	GGNCC	2 cut(s)	689, 1171
BmiI	GGNNCC	1 cut(s)	234
BmrFI	CCNGG	3 cut(s)	237, 830, 1401
BmsI	GCATC	3 cut(s)	505, 723, 956
BmtI	GCTAGC	2 cut(s)	297, 1692
BpiI	GAAGAC	3 cut(s)	113, 1003, 1224
BpmI	CTGGAG	1 cut(s)	851
Bpu10I	CCTNAGC	1 cut(s)	1242
Bpu1102I	GCTNAGC	1 cut(s)	176
Bpu14I	TTCGAA	2 cut(s)	48, 77
BpuEI	CTTGAG	1 cut(s)	1034
BsaAI	YACGTR	1 cut(s)	419
BsaBI	GATNNNNATC	1 cut(s)	573
BsaJI	CCNNGG	3 cut(s)	250, 685, 1022
BsaXI	ACNNNNNCTCC	4 cut(s)	423, 453, 1116, 1146
Bsc4I	CCNNNNNNNGG	1 cut(s)	698
Bse1I	ACTGG	2 cut(s)	194, 788
Bse3DI	GCAATG	1 cut(s)	477
Bse8I	GATNNNNATC	1 cut(s)	573
BseBI	CCWGG	3 cut(s)	237, 830, 1401
BseDI	CCNNGG	3 cut(s)	250, 685, 1022
BseGI	GGATG	4 cut(s)	367, 520, 714, 827
BseJI	GATNNNNATC	1 cut(s)	573
BseLI	CCNNNNNNNGG	1 cut(s)	698
BseMI	GCAATG	1 cut(s)	477
BseMII	CTCAG	4 cut(s)	363, 963, 1256, 1464
BseNI	ACTGG	2 cut(s)	194, 788
BseRI	GAGGAG	3 cut(s)	945, 1350, 1470
BshNI	GGYRCC	1 cut(s)	232
BslFI	GGGAC	1 cut(s)	1260
BslI	CCNNNNNNNGG	1 cut(s)	698
BsmAI	GTCTC	2 cut(s)	800, 1663
BsmFI	GGGAC	1 cut(s)	1260
BsmI	GAATGC	1 cut(s)	1089
Bsp119I	TTCGAA	2 cut(s)	48, 77
Bsp143I	GATC	6 cut(s)	3, 496, 1297, 1459, 1483, 1597
Bsp1720I	GCTNAGC	1 cut(s)	176
BspACI	CCGC	1 cut(s)	908
BspCNI	CTCAG	4 cut(s)	362, 964, 1255, 1463
BspLI	GGNNCC	1 cut(s)	234
BspMAI	CTGCAG	2 cut(s)	1429, 1684
BspOI	GCTAGC	2 cut(s)	297, 1692
BspPI	GGATC	1 cut(s)	1478
BspQI	GCTCTTC	2 cut(s)	1522, 1703
BspT104I	TTCGAA	2 cut(s)	48, 77
BspT107I	GGYRCC	1 cut(s)	232
BsrDI	GCAATG	1 cut(s)	477
BsrI	ACTGG	2 cut(s)	194, 788
BssECI	CCNNGG	3 cut(s)	250, 685, 1022
BssMI	GATC	6 cut(s)	3, 496, 1297, 1459, 1483, 1597
BssT1I	CCWWGG	2 cut(s)	250, 685
Bst2UI	CCWGG	3 cut(s)	237, 830, 1401
Bst4CI	ACNGT	5 cut(s)	992, 1023, 1182, 1211, 1552
Bst6I	CTCTTC	5 cut(s)	430, 451, 1225, 1522, 1703
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstBAI	YACGTR	1 cut(s)	419
BstBI	TTCGAA	2 cut(s)	48, 77
BstC8I	GCNNGC	8 cut(s)	173, 242, 295, 468, 509, 1239, 1690, 1694
BstDEI	CTNAG	7 cut(s)	176, 184, 349, 972, 1242, 1450, 1470
BstDSI	CCRYGG	1 cut(s)	1022
BstF5I	GGATG	4 cut(s)	367, 520, 714, 827
BstHHI	GCGC	1 cut(s)	228
BstKTI	GATC	6 cut(s)	6, 499, 1300, 1462, 1486, 1600
BstMAI	GTCTC	2 cut(s)	800, 1663
BstMBI	GATC	6 cut(s)	3, 496, 1297, 1459, 1483, 1597
BstMWI	GCNNNNNNNGC	7 cut(s)	177, 398, 524, 784, 1385, 1676, 1685
BstNI	CCWGG	3 cut(s)	237, 830, 1401
BstNSI	RCATGY	1 cut(s)	726
BstSCI	CCNGG	3 cut(s)	235, 828, 1399
BstSFI	CTRYAG	2 cut(s)	1425, 1680
BstV2I	GAAGAC	3 cut(s)	113, 1003, 1224
BstX2I	RGATCY	1 cut(s)	1483
BstYI	RGATCY	1 cut(s)	1483
BtgI	CCRYGG	1 cut(s)	1022
BtgZI	GCGATG	1 cut(s)	723
BtsCI	GGATG	4 cut(s)	367, 520, 714, 827
BtsIMutI	CAGTG	3 cut(s)	969, 1469, 1548
Cac8I	GCNNGC	8 cut(s)	173, 242, 295, 468, 509, 1239, 1690, 1694
CaiI	CAGNNNCTG	1 cut(s)	289
CfoI	GCGC	1 cut(s)	228
Cfr13I	GGNCC	2 cut(s)	689, 1171
Csp6I	GTAC	3 cut(s)	233, 1044, 1495
CviAII	CATG	6 cut(s)	53, 463, 723, 1041, 1225, 1444
CviQI	GTAC	3 cut(s)	233, 1044, 1495
DdeI	CTNAG	7 cut(s)	176, 184, 349, 972, 1242, 1450, 1470
DpnI	GATC	6 cut(s)	5, 498, 1299, 1461, 1485, 1599
DpnII	GATC	6 cut(s)	3, 496, 1297, 1459, 1483, 1597
Eam1104I	CTCTTC	5 cut(s)	430, 451, 1225, 1522, 1703
EarI	CTCTTC	5 cut(s)	430, 451, 1225, 1522, 1703
Eco130I	CCWWGG	2 cut(s)	250, 685
Eco32I	GATATC	1 cut(s)	747
Eco47I	GGWCC	2 cut(s)	689, 1171
Eco57I	CTGAAG	3 cut(s)	863, 1124, 1344
EcoRI	GAATTC	1 cut(s)	702
EcoRII	CCWGG	3 cut(s)	235, 828, 1399
EcoRV	GATATC	1 cut(s)	747
EcoT14I	CCWWGG	2 cut(s)	250, 685
ErhI	CCWWGG	2 cut(s)	250, 685
FaeI	CATG	6 cut(s)	56, 466, 726, 1044, 1228, 1447
FalI	AAGNNNNNCTT	6 cut(s)	212, 244, 516, 548, 1659, 1691
FaqI	GGGAC	1 cut(s)	1260
FatI	CATG	6 cut(s)	52, 462, 722, 1040, 1224, 1443
FbaI	TGATCA	2 cut(s)	1297, 1597
FokI	GGATG	4 cut(s)	374, 527, 701, 834
FspBI	CTAG	4 cut(s)	294, 927, 1010, 1689
GlaI	GCGC	1 cut(s)	227
GsuI	CTGGAG	1 cut(s)	851
HhaI	GCGC	1 cut(s)	228
Hin1II	CATG	6 cut(s)	56, 466, 726, 1044, 1228, 1447
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HphI	GGTGA	1 cut(s)	815
Hpy166II	GTNNAC	6 cut(s)	452, 659, 852, 1185, 1284, 1555
Hpy188III	TCNNGA	4 cut(s)	794, 1010, 1371, 1452
Hpy8I	GTNNAC	6 cut(s)	452, 659, 852, 1185, 1284, 1555
HpyAV	CCTTC	1 cut(s)	1709
HpyCH4III	ACNGT	5 cut(s)	992, 1023, 1182, 1211, 1552
HpyCH4IV	ACGT	2 cut(s)	418, 1102
HpyF10VI	GCNNNNNNNGC	7 cut(s)	177, 398, 524, 784, 1385, 1676, 1685
HpyF3I	CTNAG	7 cut(s)	176, 184, 349, 972, 1242, 1450, 1470
HpySE526I	ACGT	2 cut(s)	418, 1102
Hsp92II	CATG	6 cut(s)	56, 466, 726, 1044, 1228, 1447
HspAI	GCGC	1 cut(s)	226
KpnI	GGTACC	1 cut(s)	236
Ksp22I	TGATCA	2 cut(s)	1297, 1597
Kzo9I	GATC	6 cut(s)	3, 496, 1297, 1459, 1483, 1597
LguI	GCTCTTC	2 cut(s)	1522, 1703
LmnI	GCTCC	1 cut(s)	1621
LweI	GCATC	3 cut(s)	505, 723, 956
MaeI	CTAG	4 cut(s)	294, 927, 1010, 1689
MaeII	ACGT	2 cut(s)	418, 1102
MaeIII	GTNAC	4 cut(s)	19, 824, 884, 986
MalI	GATC	6 cut(s)	5, 498, 1299, 1461, 1485, 1599
MboI	GATC	6 cut(s)	3, 496, 1297, 1459, 1483, 1597
MflI	RGATCY	1 cut(s)	1483
MlyI	GAGTC	2 cut(s)	152, 468
MmeI	TCCRAC	1 cut(s)	799
MroXI	GAANNNNTTC	3 cut(s)	528, 765, 1671
MseI	TTAA	7 cut(s)	60, 270, 446, 551, 960, 1098, 1328
MslI	CAYNNNNRTG	2 cut(s)	110, 1314
MspR9I	CCNGG	3 cut(s)	237, 830, 1401
Mva1269I	GAATGC	1 cut(s)	1089
MvaI	CCWGG	3 cut(s)	237, 830, 1401
MwoI	GCNNNNNNNGC	7 cut(s)	177, 398, 524, 784, 1385, 1676, 1685
NdeII	GATC	6 cut(s)	3, 496, 1297, 1459, 1483, 1597
NheI	GCTAGC	2 cut(s)	293, 1688
NlaIII	CATG	6 cut(s)	56, 466, 726, 1044, 1228, 1447
NlaIV	GGNNCC	1 cut(s)	234
NmuCI	GTSAC	1 cut(s)	986
NspI	RCATGY	1 cut(s)	726
NspV	TTCGAA	2 cut(s)	48, 77
PciI	ACATGT	1 cut(s)	722
PciSI	GCTCTTC	2 cut(s)	1522, 1703
PctI	GAATGC	1 cut(s)	1089
PdmI	GAANNNNTTC	3 cut(s)	528, 765, 1671
PfeI	GAWTC	8 cut(s)	37, 761, 980, 1081, 1374, 1406, 1589, 1640
PflMI	CCANNNNNTGG	1 cut(s)	698
PleI	GAGTC	2 cut(s)	152, 467
PpsI	GAGTC	2 cut(s)	152, 467
Ppu21I	YACGTR	1 cut(s)	419
PscI	ACATGT	1 cut(s)	722
Psp6I	CCWGG	3 cut(s)	235, 828, 1399
PspGI	CCWGG	3 cut(s)	235, 828, 1399
PspN4I	GGNNCC	1 cut(s)	234
PspPI	GGNCC	2 cut(s)	689, 1171
PstI	CTGCAG	2 cut(s)	1429, 1684
PstNI	CAGNNNCTG	1 cut(s)	289
PsuI	RGATCY	1 cut(s)	1483
RsaI	GTAC	3 cut(s)	234, 1045, 1496
RsaNI	GTAC	3 cut(s)	233, 1044, 1495
RseI	CAYNNNNRTG	2 cut(s)	110, 1314
SapI	GCTCTTC	2 cut(s)	1522, 1703
SaqAI	TTAA	7 cut(s)	60, 270, 446, 551, 960, 1098, 1328
Sau3AI	GATC	6 cut(s)	3, 496, 1297, 1459, 1483, 1597
Sau96I	GGNCC	2 cut(s)	689, 1171
SchI	GAGTC	2 cut(s)	152, 468
ScrFI	CCNGG	3 cut(s)	237, 830, 1401
SfaNI	GCATC	3 cut(s)	505, 723, 956
SfcI	CTRYAG	2 cut(s)	1425, 1680
SfuI	TTCGAA	2 cut(s)	48, 77
SinI	GGWCC	2 cut(s)	689, 1171
SmiMI	CAYNNNNRTG	2 cut(s)	110, 1314
SmlI	CTYRAG	1 cut(s)	1049
SmoI	CTYRAG	1 cut(s)	1049
SsiI	CCGC	1 cut(s)	908
SspMI	CTAG	4 cut(s)	294, 927, 1010, 1689
StyD4I	CCNGG	3 cut(s)	235, 828, 1399
StyI	CCWWGG	2 cut(s)	250, 685
TaaI	ACNGT	5 cut(s)	992, 1023, 1182, 1211, 1552
TaiI	ACGT	2 cut(s)	421, 1105
TaqI	TCGA	6 cut(s)	48, 77, 161, 495, 994, 1372
TatI	WGTACW	1 cut(s)	1043
TfiI	GAWTC	8 cut(s)	37, 761, 980, 1081, 1374, 1406, 1589, 1640
Tru1I	TTAA	7 cut(s)	60, 270, 446, 551, 960, 1098, 1328
Tru9I	TTAA	7 cut(s)	60, 270, 446, 551, 960, 1098, 1328
TscAI	CASTG	3 cut(s)	976, 1469, 1555
TseFI	GTSAC	1 cut(s)	986
Tsp45I	GTSAC	1 cut(s)	986
TspDTI	ATGAA	9 cut(s)	78, 291, 524, 726, 758, 995, 1029, 1082, 1719
TspGWI	ACGGA	1 cut(s)	1608
TspRI	CASTG	3 cut(s)	976, 1469, 1555
Van91I	CCANNNNNTGG	1 cut(s)	698
VpaK11BI	GGWCC	2 cut(s)	689, 1171
XapI	RAATTY	5 cut(s)	490, 560, 702, 754, 1034
XbaI	TCTAGA	1 cut(s)	1009
XceI	RCATGY	1 cut(s)	726
XcmI	CCANNNNNNNNNTGG	1 cut(s)	50
XmnI	GAANNNNTTC	3 cut(s)	528, 765, 1671
XspI	CTAG	4 cut(s)	294, 927, 1010, 1689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.