Rh2DG299100

Belongs to the peptidase C19 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0010504
Physical Location & Seq
Reverse (-)
35495818 .. 35501636
5819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG299100.1

Sequence Viewer

Length: 1380 bp
ATGAAGTTCGAGAGAGAGGTCACTCTAAAGTCATTGGCTCGCCAATTCCAACATGGGTTTAAGACGCTTTCTCGTTCTTCTGGACTTCACATATCTGTAGCTGGTCTTCTTGGTATTGCTGGTCTCGTTTTGGCTCTCAAAGACTCCAAATTGGGCAAGCTCAGCAGCTTACAGTGGCTACCCAAGAACGAACGTGGTGATCCCAACTTGCATTTGGTACCTGGGTTGCAAAACCTTGGGAACAATTGTTTCCTGAACGTGATTTTACAGGCTCTGGCTAGTTGTTCATACTTTCAACCTTTTCTTCAAAAGGTTTTAGAGGAGTCTGAGTTCTTAGCAGTTGAGGATTCCGCAGATTGCGTGCCGCTTACAATATCTTTAGCTGCATTGTTAGAAGACCTATGCGCAGTTGGTGGAGGAAGAGTTGTATTGAGTCCACGGCGAGTGATGCTTGCCATAACACATTACATTGAGAACTTTGATCTAACAAGCGAGCAGGATGCAGCAGAAGCATTTCTTCACCTTCTGTCCTCTTTAAGAGAAGAATTCTCAGATTTTTATTGTCCAACTCAAGGTTCTATAGTGGAAGTCTTAGCCTCTAATGGTAGGATTATTACTCCAAAGAGAACGGAGAGCCAAAGTGAGCAGGAAAGATGGCAGCAACGCTTCTTTGGACCATTTGATGGAATTCTTGGCAGTATCCTAACCTGTCGAAGTTGTTCATCGCAGATGGCTGGATGTACCTTAGAGGATTGCCTGAAGCAGTTTACTGCTGCTGAGCAAGTTGAGAATTACCACTGCAGCCATTGTTGGCATATTGCTGCAGTCAAATATTTATTATCTATGGGAGGAAATGAGGCAGCAATTGAAAAGATTGAGAGTTGCACTGAGCAAGATTCCTGTGACTGTCAAAGACTTTTTCATCTAGAATCACTACCATGGTCGAATAGGTTTTCACGCACTCTAAAGCAAATAAGTATTGCTCGCTGCCCAAAGATTTTGTGCATTCACCTAAAACGCGTTTCAATCAATGTATTTGGAGAACTTGTAAAACTACAGGGCCATATTTATTTTCCATTGGTTTTGGACCTTTTAAGTTTCATGACAAGTGGGGTGGGAATAAAGCATTGGGAGAAAAACCAGAAAACAGGGCGAGTCTGGCTACAAAGAGAAAACCCTCGGCCCAATCATTTCAATTTAGAGTGTGATCCAAGAAAGTTAAATATTGTCCGGGGACTAGCAAGAGGAAGCACCTTCCAAGAAGAATTAGCTTCAGATGTATCTCAGTTCACTGCAAATGCACAAGATTCAGCAGGAGAATTCAACTTTCCCCCAACTGGAGGCTTTCCAAAAACCATGCCTACAGGCACAAACCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04137 map04137
Pfam Domains
Protein Families
UCH

Protein Analysis

459

Amino Acids

51.2

Weight (kDa)

6.51

Isoelectric Point (pI)

57.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UCH PF00443 75 - 373 2.6e-27 Ubiquitin carboxyl-terminal hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 406
Acc65I GGTACC 1 cut(s) 217
AccB1I GGYRCC 1 cut(s) 217
AccB7I CCANNNNNTGG 1 cut(s) 683
AccII CGCG 1 cut(s) 1020
AciI CCGC 2 cut(s) 351, 365
AclWI GGATC 2 cut(s) 194, 1202
AcsI RAATTY 3 cut(s) 545, 687, 1319
AcuI CTGAAG 2 cut(s) 779, 1257
AfaI GTAC 2 cut(s) 219, 742
AfiI CCNNNNNNNGG 4 cut(s) 572, 683, 1337, 1340
AflIII ACRYGT 1 cut(s) 1018
AgsI TTSAA 6 cut(s) 296, 308, 869, 1026, 1195, 1324
AjnI CCWGG 1 cut(s) 220
AjuI GAANNNNNNNTTGG 4 cut(s) 559, 591, 1111, 1143
AloI GAACNNNNNNTCC 2 cut(s) 314, 346
AluBI AGCT 5 cut(s) 101, 160, 168, 383, 1271
AluI AGCT 5 cut(s) 101, 160, 168, 383, 1271
Alw26I GTCTC 1 cut(s) 128
AlwI GGATC 2 cut(s) 194, 1202
AlwNI CAGNNNCTG 1 cut(s) 274
AoxI GGCC 2 cut(s) 1060, 1181
ApeKI GCWGC 9 cut(s) 165, 383, 503, 658, 773, 801, 821, 860, 987
ApoI RAATTY 3 cut(s) 545, 687, 1319
Asp700I GAANNNNTTC 2 cut(s) 513, 718
Asp718I GGTACC 1 cut(s) 217
AspLEI GCGC 1 cut(s) 407
AspS9I GGNCC 4 cut(s) 674, 1060, 1087, 1182
AsuC2I CCSGG 1 cut(s) 1232
AsuHPI GGTGA 3 cut(s) 209, 512, 1001
AvaII GGWCC 2 cut(s) 674, 1087
BaeI ACNNNNGTAYC 2 cut(s) 209, 242
BanI GGYRCC 1 cut(s) 217
BarI GAAGNNNNNNTAC 2 cut(s) 90, 122
BbsI GAAGAC 2 cut(s) 98, 402
BbvI GCAGC 9 cut(s) 177, 370, 515, 670, 760, 808, 813, 872, 974
BccI CCATC 3 cut(s) 648, 677, 724
BceAI ACGGC 1 cut(s) 455
BcgI CGANNNNNNTGC 2 cut(s) 482, 516
BciT130I CCWGG 1 cut(s) 222
BciVI GTATCC 1 cut(s) 710
BcnI CCSGG 1 cut(s) 1232
BcoDI GTCTC 1 cut(s) 128
BfaI CTAG 3 cut(s) 279, 926, 1238
BfmI CTRYAG 6 cut(s) 96, 579, 799, 822, 1055, 1362
BfuI GTATCC 1 cut(s) 710
BlpI GCTNAGC 2 cut(s) 161, 777
Bme1390I CCNGG 2 cut(s) 222, 1232
Bme18I GGWCC 2 cut(s) 674, 1087
BmgT120I GGNCC 4 cut(s) 674, 1060, 1087, 1182
BmiI GGNNCC 1 cut(s) 219
BmrFI CCNGG 2 cut(s) 222, 1232
BmsI GCATC 2 cut(s) 438, 490
BpiI GAAGAC 2 cut(s) 98, 402
BpmI CTGGAG 1 cut(s) 1359
Bpu1102I GCTNAGC 2 cut(s) 161, 777
BpuEI CTTGAG 1 cut(s) 555
BpuMI CCSGG 1 cut(s) 1232
BsaI GGTCTC 1 cut(s) 128
BsaJI CCNNGG 6 cut(s) 221, 235, 437, 938, 1178, 1231
BsaXI ACNNNNNCTCC 6 cut(s) 314, 344, 408, 438, 1032, 1062
Bsc4I CCNNNNNNNGG 4 cut(s) 572, 683, 1337, 1340
Bse1I ACTGG 2 cut(s) 1342, 1375
BseBI CCWGG 1 cut(s) 222
BseDI CCNNGG 6 cut(s) 221, 235, 437, 938, 1178, 1231
BseGI GGATG 2 cut(s) 505, 743
BseLI CCNNNNNNNGG 4 cut(s) 572, 683, 1337, 1340
BseMII CTCAG 6 cut(s) 175, 318, 564, 768, 879, 1298
BseNI ACTGG 2 cut(s) 1342, 1375
BseRI GAGGAG 1 cut(s) 335
BseXI GCAGC 9 cut(s) 177, 370, 515, 670, 760, 808, 813, 872, 974
Bsh1236I CGCG 1 cut(s) 1020
BshFI GGCC 2 cut(s) 1062, 1183
BshNI GGYRCC 1 cut(s) 217
BsiSI CCGG 1 cut(s) 1231
BslFI GGGAC 1 cut(s) 1248
BslI CCNNNNNNNGG 4 cut(s) 572, 683, 1337, 1340
BsmAI GTCTC 1 cut(s) 128
BsmFI GGGAC 1 cut(s) 1248
BsmI GAATGC 1 cut(s) 1005
BsnI GGCC 2 cut(s) 1062, 1183
Bso31I GGTCTC 1 cut(s) 128
Bsp143I GATC 3 cut(s) 199, 481, 1207
Bsp1720I GCTNAGC 2 cut(s) 161, 777
Bsp19I CCATGG 1 cut(s) 938
BspACI CCGC 2 cut(s) 351, 365
BspANI GGCC 2 cut(s) 1062, 1183
BspCNI CTCAG 6 cut(s) 174, 319, 563, 769, 880, 1297
BspFNI CGCG 1 cut(s) 1020
BspHI TCATGA 1 cut(s) 1101
BspLI GGNNCC 1 cut(s) 219
BspMAI CTGCAG 2 cut(s) 803, 826
BspPI GGATC 2 cut(s) 194, 1202
BspT107I GGYRCC 1 cut(s) 217
BspTNI GGTCTC 1 cut(s) 128
BsrI ACTGG 2 cut(s) 1342, 1375
BssECI CCNNGG 6 cut(s) 221, 235, 437, 938, 1178, 1231
BssMI GATC 3 cut(s) 199, 481, 1207
BssT1I CCWWGG 2 cut(s) 235, 938
Bst2UI CCWGG 1 cut(s) 222
Bst4CI ACNGT 2 cut(s) 174, 908
Bst6I CTCTTC 1 cut(s) 415
BstC8I GCNNGC 6 cut(s) 40, 158, 362, 453, 494, 985
BstDEI CTNAG 9 cut(s) 161, 327, 334, 550, 592, 745, 777, 888, 1284
BstDSI CCRYGG 2 cut(s) 437, 938
BstF5I GGATG 2 cut(s) 505, 743
BstFNI CGCG 1 cut(s) 1020
BstHHI GCGC 1 cut(s) 407
BstKTI GATC 3 cut(s) 202, 484, 1210
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 3 cut(s) 199, 481, 1207
BstMWI GCNNNNNNNGC 4 cut(s) 162, 448, 509, 1159
BstNI CCWGG 1 cut(s) 222
BstSCI CCNGG 2 cut(s) 220, 1230
BstSFI CTRYAG 6 cut(s) 96, 579, 799, 822, 1055, 1362
BstUI CGCG 1 cut(s) 1020
BstV1I GCAGC 9 cut(s) 177, 370, 515, 670, 760, 808, 813, 872, 974
BstV2I GAAGAC 2 cut(s) 98, 402
BsuI GTATCC 1 cut(s) 710
BsuRI GGCC 2 cut(s) 1062, 1183
BtgI CCRYGG 2 cut(s) 437, 938
BtgZI GCGATG 1 cut(s) 708
BtsCI GGATG 2 cut(s) 505, 743
BtsI GCAGTG 2 cut(s) 796, 1290
BtsIMutI CAGTG 4 cut(s) 179, 796, 885, 1290
Cac8I GCNNGC 6 cut(s) 40, 158, 362, 453, 494, 985
CaiI CAGNNNCTG 1 cut(s) 274
CciI TCATGA 1 cut(s) 1101
CfoI GCGC 1 cut(s) 407
Cfr13I GGNCC 4 cut(s) 674, 1060, 1087, 1182
CseI GACGC 1 cut(s) 73
Csp6I GTAC 2 cut(s) 218, 741
CspCI CAANNNNNGTGG 2 cut(s) 1095, 1130
CviAII CATG 4 cut(s) 53, 939, 1102, 1357
CviQI GTAC 2 cut(s) 218, 741
DdeI CTNAG 9 cut(s) 161, 327, 334, 550, 592, 745, 777, 888, 1284
DpnI GATC 3 cut(s) 201, 483, 1209
DpnII GATC 3 cut(s) 199, 481, 1207
Eam1104I CTCTTC 1 cut(s) 415
EarI CTCTTC 1 cut(s) 415
Eco130I CCWWGG 2 cut(s) 235, 938
Eco31I GGTCTC 1 cut(s) 128
Eco47I GGWCC 2 cut(s) 674, 1087
Eco57I CTGAAG 2 cut(s) 779, 1257
EcoRI GAATTC 3 cut(s) 545, 687, 1319
EcoRII CCWGG 1 cut(s) 220
EcoT14I CCWWGG 2 cut(s) 235, 938
ErhI CCWWGG 2 cut(s) 235, 938
FaeI CATG 4 cut(s) 56, 942, 1105, 1360
FalI AAGNNNNNCTT 2 cut(s) 501, 533
FaqI GGGAC 1 cut(s) 1248
FatI CATG 4 cut(s) 52, 938, 1101, 1356
FokI GGATG 2 cut(s) 512, 750
FspBI CTAG 3 cut(s) 279, 926, 1238
FspI TGCGCA 1 cut(s) 406
GlaI GCGC 1 cut(s) 406
GsuI CTGGAG 1 cut(s) 1359
HaeIII GGCC 2 cut(s) 1062, 1183
HapII CCGG 1 cut(s) 1231
HgaI GACGC 1 cut(s) 73
HhaI GCGC 1 cut(s) 407
Hin1II CATG 4 cut(s) 56, 942, 1105, 1360
Hin6I GCGC 1 cut(s) 405
HinP1I GCGC 1 cut(s) 405
HinfI GANTC 8 cut(s) 143, 323, 347, 433, 896, 929, 1155, 1307
HpaII CCGG 1 cut(s) 1231
HphI GGTGA 3 cut(s) 209, 512, 1001
Hpy166II GTNNAC 3 cut(s) 437, 768, 1290
Hpy188I TCNGA 3 cut(s) 328, 553, 1276
Hpy188III TCNNGA 5 cut(s) 10, 81, 253, 926, 1102
Hpy8I GTNNAC 3 cut(s) 437, 768, 1290
HpyAV CCTTC 2 cut(s) 533, 1264
HpyCH4III ACNGT 2 cut(s) 174, 908
HpyCH4IV ACGT 2 cut(s) 193, 258
HpyF10VI GCNNNNNNNGC 4 cut(s) 162, 448, 509, 1159
HpyF3I CTNAG 9 cut(s) 161, 327, 334, 550, 592, 745, 777, 888, 1284
HpySE526I ACGT 2 cut(s) 193, 258
Hsp92II CATG 4 cut(s) 56, 942, 1105, 1360
HspAI GCGC 1 cut(s) 405
KpnI GGTACC 1 cut(s) 221
Kzo9I GATC 3 cut(s) 199, 481, 1207
Lsp1109I GCAGC 9 cut(s) 177, 370, 515, 670, 760, 808, 813, 872, 974
LweI GCATC 2 cut(s) 438, 490
MaeI CTAG 3 cut(s) 279, 926, 1238
MaeII ACGT 2 cut(s) 193, 258
MaeIII GTNAC 2 cut(s) 19, 902
MalI GATC 3 cut(s) 201, 483, 1209
MboI GATC 3 cut(s) 199, 481, 1207
MboII GAAGA 8 cut(s) 69, 98, 296, 407, 432, 509, 554, 1274
MfeI CAATTG 2 cut(s) 244, 864
MluI ACGCGT 1 cut(s) 1018
MlyI GAGTC 4 cut(s) 137, 332, 442, 1164
MmeI TCCRAC 2 cut(s) 73, 590
MroXI GAANNNNTTC 2 cut(s) 513, 718
MseI TTAA 4 cut(s) 60, 536, 1094, 1220
MslI CAYNNNNRTG 1 cut(s) 937
MspI CCGG 1 cut(s) 1231
MspR9I CCNGG 2 cut(s) 222, 1232
MunI CAATTG 2 cut(s) 244, 864
Mva1269I GAATGC 1 cut(s) 1005
MvaI CCWGG 1 cut(s) 222
MvnI CGCG 1 cut(s) 1020
MwoI GCNNNNNNNGC 4 cut(s) 162, 448, 509, 1159
NciI CCSGG 1 cut(s) 1232
NcoI CCATGG 1 cut(s) 938
NdeII GATC 3 cut(s) 199, 481, 1207
NlaIII CATG 4 cut(s) 56, 942, 1105, 1360
NlaIV GGNNCC 1 cut(s) 219
NmeAIII GCCGAG 1 cut(s) 1159
NmuCI GTSAC 2 cut(s) 19, 902
NsbI TGCGCA 1 cut(s) 406
PagI TCATGA 1 cut(s) 1101
PctI GAATGC 1 cut(s) 1005
PdmI GAANNNNTTC 2 cut(s) 513, 718
PfeI GAWTC 4 cut(s) 347, 896, 929, 1307
PflMI CCANNNNNTGG 1 cut(s) 683
PleI GAGTC 4 cut(s) 137, 331, 441, 1163
PpsI GAGTC 4 cut(s) 137, 331, 441, 1163
Psp6I CCWGG 1 cut(s) 220
PspGI CCWGG 1 cut(s) 220
PspN4I GGNNCC 1 cut(s) 219
PspPI GGNCC 4 cut(s) 674, 1060, 1087, 1182
PstI CTGCAG 2 cut(s) 803, 826
PstNI CAGNNNCTG 1 cut(s) 274
RsaI GTAC 2 cut(s) 219, 742
RsaNI GTAC 2 cut(s) 218, 741
RseI CAYNNNNRTG 1 cut(s) 937
SaqAI TTAA 4 cut(s) 60, 536, 1094, 1220
Sau3AI GATC 3 cut(s) 199, 481, 1207
Sau96I GGNCC 4 cut(s) 674, 1060, 1087, 1182
SchI GAGTC 4 cut(s) 137, 332, 442, 1164
ScrFI CCNGG 2 cut(s) 222, 1232
SfaNI GCATC 2 cut(s) 438, 490
SfcI CTRYAG 6 cut(s) 96, 579, 799, 822, 1055, 1362
SinI GGWCC 2 cut(s) 674, 1087
SmiMI CAYNNNNRTG 1 cut(s) 937
SmlI CTYRAG 1 cut(s) 570
SmoI CTYRAG 1 cut(s) 570
SsiI CCGC 2 cut(s) 351, 365
SspI AATATT 2 cut(s) 833, 1225
SspMI CTAG 3 cut(s) 279, 926, 1238
StyD4I CCNGG 2 cut(s) 220, 1230
StyI CCWWGG 2 cut(s) 235, 938
TaaI ACNGT 2 cut(s) 174, 908
TaiI ACGT 2 cut(s) 196, 261
TaqI TCGA 3 cut(s) 9, 712, 944
TauI GCSGC 1 cut(s) 367
TfiI GAWTC 4 cut(s) 347, 896, 929, 1307
Tru1I TTAA 4 cut(s) 60, 536, 1094, 1220
Tru9I TTAA 4 cut(s) 60, 536, 1094, 1220
TscAI CASTG 4 cut(s) 179, 803, 892, 1297
TseFI GTSAC 2 cut(s) 19, 902
TseI GCWGC 9 cut(s) 165, 383, 503, 658, 773, 801, 821, 860, 987
Tsp45I GTSAC 2 cut(s) 19, 902
TspDTI ATGAA 5 cut(s) 17, 276, 711, 911, 1090
TspGWI ACGGA 1 cut(s) 644
TspRI CASTG 4 cut(s) 179, 803, 892, 1297
Van91I CCANNNNNTGG 1 cut(s) 683
VpaK11BI GGWCC 2 cut(s) 674, 1087
XapI RAATTY 3 cut(s) 545, 687, 1319
XbaI TCTAGA 1 cut(s) 925
XcmI CCANNNNNNNNNTGG 2 cut(s) 50, 211
XmnI GAANNNNTTC 2 cut(s) 513, 718
XspI CTAG 3 cut(s) 279, 926, 1238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.