Rorug02G0216100

Belongs to the peptidase C19 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010504
Physical Location & Seq
Forward (+)
20736880 .. 20738307
1428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0216100.1

Sequence Viewer

Length: 1428 bp
ATGAGCTTTGAGACAGAGTCCAAGAAGCTTCACATAGCCTTCTTTCCATGGCTAGCTTTTGGTCACATAATCCCATTTCTCGAGTTTGCCAAACACATTGCTCAAAGAGGTCATCGTGTCTCCTTCATATCAACCCCAAGAAACATCCAACGCCTCCCAAAAATCCCTCAAAACTTAGCATCTTCGATCGATTTGGTCCAAATCCCACTTTCCCACGTCGAAAACCTTCCTGAAAACGCAGAGGCCACCATGGATGTAACAGTTGACCTAATCCCTTACCTCAAAATAGCTCACGATGGACTTGAAGCTGGTATTTCCAACTTCCTCGAGACTCACACTCCGGATTGGATAATTAACGACTTTACCCCTTACTGGCTACCAGCACTAGCTATCAAACTAGGCATCTCACGAGCCCAGTTCAGTATTCTCAACGCCTCAGCTCTATGTTTCTTTGGACCAACATCACCGGACCAAATAAACCGCTATGGTCTTAGAAAACTGCCCAAGCAATTCACTGTCACTCCCCAATGGATTCCCTTTCCTTCGAAACAGTTTATGAAGCCTTTCGAGACCAAGAGAATGTTCCATGCTGTGAAACCAAAGTATGCTTCTGACTCTGATTCCGGGGTTAACGATTGGGTTCGTATGACCTCAACTATTCAAGGCTGTCAGGTCTATTTTGTTCGAACCTGTAGAGAGATCGAAGGGGAGTGGCTTGATTTGCTCCAAGACCTCCACCAAAAACCTGTAGTGCTTCCGGCCGGTCTGCTCCCACCGCAGTTACAACAACAGAGGAGTGAAGATCAAGAAGACCCTAGAATCGCCGAGTGGTTGGATAAGCAGGAGAAGGGGACTGTGGTTTATGTGGCATTTGGAAGTGAGGTTAATCCAAGTCAAGAAGAATTCTCGGAATTGGCTCTTGGGTTAGAGCTTTCTGGGTTGCCTTTCTTTTGGGCATTGAGGAAATCACCACATAGTGAGGATGGTGACTCGGTGAAGTTACCGGATGGGTTTGTGGACCGAACAAATGGTCGTGGCGTTGTCTGGACAACTTGGGCTCCTCAGCTCAAAATATTGTCCCACGAGTCGATTGGCGGTTTCTTGACTCACTGTGGTTGGGGTTCAGTCATAGAAGGTCTGCATTATGGACGTCCACTTATCATGTTTCCAGTCTTATATGATCAAGGGCTTAATGCTAGGTTTTGGGACAAGAAGGTTGGGATTGAGGTACCGAGAGACGAAGAGAATGGATCGTTTACCAGGAACACGGTGGCTGAGTCAGTGCGTCTGGTTGTCAAGGATGAGGAGGGGAAGGCTTACAGAGATGGTGCCAAAGAGTACAGTGGGTTATTTGGAGACAAGGACCTCCATGACAGATACATGGACAAATGCGTGGAGTATTTGGAAAACAAAGTGACTAATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04137 map04137
Pfam Domains
Protein Families
UCH

Protein Analysis

475

Amino Acids

54.0

Weight (kDa)

5.74

Isoelectric Point (pI)

39.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 282 - 456 9.5e-18 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1153
Acc65I GGTACC 1 cut(s) 1228
AccB1I GGYRCC 2 cut(s) 1228, 1328
AccIII TCCGGA 1 cut(s) 340
AciI CCGC 3 cut(s) 481, 776, 1095
AclWI GGATC 1 cut(s) 1258
AcoI YGGCCR 1 cut(s) 759
AcsI RAATTY 1 cut(s) 902
AcyI GRCGYC 1 cut(s) 1150
AdeI CACNNNGTG 1 cut(s) 977
AfaI GTAC 2 cut(s) 1230, 1340
AfiI CCNNNNNNNGG 1 cut(s) 372
AgsI TTSAA 2 cut(s) 305, 662
AjiI CACGTC 1 cut(s) 217
AjnI CCWGG 1 cut(s) 1259
AjuI GAANNNNNNNTTGG 6 cut(s) 566, 592, 598, 624, 903, 935
AluBI AGCT 9 cut(s) 6, 28, 56, 290, 308, 389, 440, 931, 1066
AluI AGCT 9 cut(s) 6, 28, 56, 290, 308, 389, 440, 931, 1066
Alw26I GTCTC 6 cut(s) 5, 124, 323, 563, 1230, 1350
AlwI GGATC 1 cut(s) 1258
Ama87I CYCGRG 2 cut(s) 80, 326
Aor13HI TCCGGA 1 cut(s) 340
AoxI GGCC 2 cut(s) 243, 759
ApoI RAATTY 1 cut(s) 902
ArsI GACNNNNNNTTYG 2 cut(s) 1015, 1047
Asp700I GAANNNNTTC 2 cut(s) 225, 563
Asp718I GGTACC 1 cut(s) 1228
AspS9I GGNCC 5 cut(s) 196, 455, 469, 1018, 1363
AsuC2I CCSGG 1 cut(s) 625
AsuHPI GGTGA 4 cut(s) 456, 960, 998, 1006
AsuII TTCGAA 2 cut(s) 545, 685
AsuNHI GCTAGC 1 cut(s) 52
AvaI CYCGRG 2 cut(s) 80, 326
AvaII GGWCC 5 cut(s) 196, 455, 469, 1018, 1363
BanI GGYRCC 2 cut(s) 1228, 1328
BanII GRGCYC 2 cut(s) 415, 1060
BauI CACGAG 2 cut(s) 408, 1082
BbsI GAAGAC 1 cut(s) 816
BbvCI CCTCAGC 2 cut(s) 436, 1062
BccI CCATC 4 cut(s) 290, 977, 1001, 1319
BciT130I CCWGG 1 cut(s) 1261
BclI TGATCA 1 cut(s) 1180
BcnI CCSGG 1 cut(s) 625
BcoDI GTCTC 6 cut(s) 5, 124, 323, 563, 1230, 1350
BfaI CTAG 5 cut(s) 53, 386, 398, 816, 1197
BfmI CTRYAG 2 cut(s) 691, 747
Bme1390I CCNGG 2 cut(s) 625, 1261
Bme18I GGWCC 5 cut(s) 196, 455, 469, 1018, 1363
BmeT110I CYCGRG 2 cut(s) 80, 326
BmgBI CACGTC 1 cut(s) 217
BmgT120I GGNCC 5 cut(s) 196, 455, 469, 1018, 1363
BmiI GGNNCC 3 cut(s) 1059, 1230, 1330
BmrFI CCNGG 2 cut(s) 625, 1261
BmrI ACTGGG 1 cut(s) 409
BmsI GCATC 2 cut(s) 188, 411
BmtI GCTAGC 1 cut(s) 56
BmuI ACTGGG 1 cut(s) 409
BpiI GAAGAC 1 cut(s) 816
Bpu10I CCTNAGC 2 cut(s) 436, 1062
Bpu14I TTCGAA 2 cut(s) 545, 685
BpuMI CCSGG 1 cut(s) 625
Bsa29I ATCGAT 1 cut(s) 189
BsaHI GRCGYC 1 cut(s) 1150
BsaI GGTCTC 1 cut(s) 563
BsaJI CCNNGG 3 cut(s) 47, 249, 624
BsaWI WCCGGW 3 cut(s) 340, 466, 1003
BsaXI ACNNNNNCTCC 6 cut(s) 322, 352, 505, 535, 1042, 1072
Bsc4I CCNNNNNNNGG 1 cut(s) 372
Bse118I RCCGGY 1 cut(s) 761
Bse1I ACTGG 3 cut(s) 377, 415, 1169
Bse3DI GCAATG 1 cut(s) 96
BseAI TCCGGA 1 cut(s) 340
BseBI CCWGG 1 cut(s) 1261
BseCI ATCGAT 1 cut(s) 189
BseDI CCNNGG 3 cut(s) 47, 249, 624
BseGI GGATG 5 cut(s) 144, 259, 988, 1012, 1306
BseLI CCNNNNNNNGG 1 cut(s) 372
BseMI GCAATG 1 cut(s) 96
BseMII CTCAG 3 cut(s) 450, 1076, 1266
BseNI ACTGG 3 cut(s) 377, 415, 1169
BseRI GAGGAG 3 cut(s) 808, 1050, 1319
BseX3I CGGCCG 1 cut(s) 759
Bsh1285I CGRYCG 2 cut(s) 189, 762
BshFI GGCC 2 cut(s) 245, 761
BshNI GGYRCC 2 cut(s) 1228, 1328
BshVI ATCGAT 1 cut(s) 189
BsiEI CGRYCG 2 cut(s) 189, 762
BsiHKCI CYCGRG 2 cut(s) 80, 326
BsiSI CCGG 6 cut(s) 341, 467, 624, 758, 762, 1004
BslFI GGGAC 3 cut(s) 865, 1063, 1220
BslI CCNNNNNNNGG 1 cut(s) 372
BsmAI GTCTC 6 cut(s) 5, 124, 323, 563, 1230, 1350
BsmBI CGTCTC 1 cut(s) 1230
BsmFI GGGAC 3 cut(s) 865, 1063, 1220
BsnI GGCC 2 cut(s) 245, 761
Bso31I GGTCTC 1 cut(s) 563
BsoBI CYCGRG 2 cut(s) 80, 326
Bsp119I TTCGAA 2 cut(s) 545, 685
Bsp1286I GDGCHC 2 cut(s) 415, 1060
Bsp13I TCCGGA 1 cut(s) 340
Bsp143I GATC 5 cut(s) 186, 699, 802, 1180, 1250
Bsp19I CCATGG 2 cut(s) 47, 249
BspACI CCGC 3 cut(s) 481, 776, 1095
BspANI GGCC 2 cut(s) 245, 761
BspCNI CTCAG 3 cut(s) 449, 1075, 1267
BspDI ATCGAT 1 cut(s) 189
BspEI TCCGGA 1 cut(s) 340
BspLI GGNNCC 3 cut(s) 1059, 1230, 1330
BspOI GCTAGC 1 cut(s) 56
BspPI GGATC 1 cut(s) 1258
BspT104I TTCGAA 2 cut(s) 545, 685
BspT107I GGYRCC 2 cut(s) 1228, 1328
BspTNI GGTCTC 1 cut(s) 563
BsrDI GCAATG 1 cut(s) 96
BsrFI RCCGGY 1 cut(s) 761
BsrI ACTGG 3 cut(s) 377, 415, 1169
BssAI RCCGGY 1 cut(s) 761
BssECI CCNNGG 3 cut(s) 47, 249, 624
BssMI GATC 5 cut(s) 186, 699, 802, 1180, 1250
BssNI GRCGYC 1 cut(s) 1150
BssSI CACGAG 2 cut(s) 408, 1082
BssT1I CCWWGG 2 cut(s) 47, 249
Bst2BI CACGAG 2 cut(s) 408, 1082
Bst2UI CCWGG 1 cut(s) 1261
Bst4CI ACNGT 7 cut(s) 262, 517, 552, 856, 1112, 1270, 1343
Bst6I CTCTTC 1 cut(s) 1236
BstACI GRCGYC 1 cut(s) 1150
BstBI TTCGAA 2 cut(s) 545, 685
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 5 cut(s) 175, 436, 491, 1062, 1275
BstDSI CCRYGG 2 cut(s) 47, 249
BstF5I GGATG 5 cut(s) 144, 259, 988, 1012, 1306
BstKTI GATC 5 cut(s) 189, 702, 805, 1183, 1253
BstMAI GTCTC 6 cut(s) 5, 124, 323, 563, 1230, 1350
BstMBI GATC 5 cut(s) 186, 699, 802, 1180, 1250
BstMCI CGRYCG 2 cut(s) 189, 762
BstMWI GCNNNNNNNGC 2 cut(s) 721, 775
BstNI CCWGG 1 cut(s) 1261
BstSCI CCNGG 2 cut(s) 623, 1259
BstSFI CTRYAG 2 cut(s) 691, 747
BstV2I GAAGAC 1 cut(s) 816
BstZI CGGCCG 1 cut(s) 759
Bsu15I ATCGAT 1 cut(s) 189
BsuRI GGCC 2 cut(s) 245, 761
BsuTUI ATCGAT 1 cut(s) 189
BtgI CCRYGG 2 cut(s) 47, 249
BtrI CACGTC 1 cut(s) 217
BtsCI GGATG 5 cut(s) 144, 259, 988, 1012, 1306
BtsIMutI CAGTG 4 cut(s) 513, 1108, 1287, 1348
Cac8I GCNNGC 1 cut(s) 54
Cfr10I RCCGGY 1 cut(s) 761
Cfr13I GGNCC 5 cut(s) 196, 455, 469, 1018, 1363
ClaI ATCGAT 1 cut(s) 189
CseI GACGC 1 cut(s) 1274
Csp6I GTAC 2 cut(s) 1229, 1339
CviAII CATG 6 cut(s) 48, 250, 587, 1162, 1370, 1381
CviQI GTAC 2 cut(s) 1229, 1339
DdeI CTNAG 5 cut(s) 175, 436, 491, 1062, 1275
DpnI GATC 5 cut(s) 188, 701, 804, 1182, 1252
DpnII GATC 5 cut(s) 186, 699, 802, 1180, 1250
DraIII CACNNNGTG 1 cut(s) 977
EaeI YGGCCR 1 cut(s) 759
EagI CGGCCG 1 cut(s) 759
Eam1104I CTCTTC 1 cut(s) 1236
EarI CTCTTC 1 cut(s) 1236
EclXI CGGCCG 1 cut(s) 759
Eco130I CCWWGG 2 cut(s) 47, 249
Eco24I GRGCYC 2 cut(s) 415, 1060
Eco31I GGTCTC 1 cut(s) 563
Eco47I GGWCC 5 cut(s) 196, 455, 469, 1018, 1363
Eco52I CGGCCG 1 cut(s) 759
Eco88I CYCGRG 2 cut(s) 80, 326
EcoO109I RGGNCCY 1 cut(s) 1363
EcoRI GAATTC 1 cut(s) 902
EcoRII CCWGG 1 cut(s) 1259
EcoT14I CCWWGG 2 cut(s) 47, 249
EcoT38I GRGCYC 2 cut(s) 415, 1060
ErhI CCWWGG 2 cut(s) 47, 249
Esp3I CGTCTC 1 cut(s) 1230
FaeI CATG 6 cut(s) 51, 253, 590, 1165, 1373, 1384
FaqI GGGAC 3 cut(s) 865, 1063, 1220
FatI CATG 6 cut(s) 47, 249, 586, 1161, 1369, 1380
FbaI TGATCA 1 cut(s) 1180
FokI GGATG 5 cut(s) 131, 266, 995, 1019, 1313
FriOI GRGCYC 2 cut(s) 415, 1060
FspBI CTAG 5 cut(s) 53, 386, 398, 816, 1197
HaeIII GGCC 2 cut(s) 245, 761
HapII CCGG 6 cut(s) 341, 467, 624, 758, 762, 1004
HgaI GACGC 1 cut(s) 1274
Hin1I GRCGYC 1 cut(s) 1150
Hin1II CATG 6 cut(s) 51, 253, 590, 1165, 1373, 1384
HincII GTYRAC 2 cut(s) 265, 631
HindII GTYRAC 2 cut(s) 265, 631
HindIII AAGCTT 1 cut(s) 26
HpaI GTTAAC 1 cut(s) 631
HpaII CCGG 6 cut(s) 341, 467, 624, 758, 762, 1004
HphI GGTGA 4 cut(s) 456, 960, 998, 1006
Hpy166II GTNNAC 5 cut(s) 265, 631, 1018, 1154, 1257
Hpy188I TCNGA 3 cut(s) 613, 619, 910
Hpy8I GTNNAC 5 cut(s) 265, 631, 1018, 1154, 1257
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 9 cut(s) 49, 133, 236, 552, 698, 841, 1127, 1207, 1306
HpyCH4III ACNGT 7 cut(s) 262, 517, 552, 856, 1112, 1270, 1343
HpyCH4IV ACGT 2 cut(s) 216, 1150
HpyCH4V TGCA 1 cut(s) 1141
HpyF10VI GCNNNNNNNGC 2 cut(s) 721, 775
HpyF3I CTNAG 5 cut(s) 175, 436, 491, 1062, 1275
HpySE526I ACGT 2 cut(s) 216, 1150
Hsp92I GRCGYC 1 cut(s) 1150
Hsp92II CATG 6 cut(s) 51, 253, 590, 1165, 1373, 1384
Kpn2I TCCGGA 1 cut(s) 340
KpnI GGTACC 1 cut(s) 1232
Ksp22I TGATCA 1 cut(s) 1180
KspAI GTTAAC 1 cut(s) 631
Kzo9I GATC 5 cut(s) 186, 699, 802, 1180, 1250
LmnI GCTCC 3 cut(s) 729, 774, 1063
LweI GCATC 2 cut(s) 188, 411
MaeI CTAG 5 cut(s) 53, 386, 398, 816, 1197
MaeII ACGT 2 cut(s) 216, 1150
MaeIII GTNAC 7 cut(s) 62, 256, 517, 780, 986, 999, 1414
MalI GATC 5 cut(s) 188, 701, 804, 1182, 1252
MboI GATC 5 cut(s) 186, 699, 802, 1180, 1250
MboII GAAGA 5 cut(s) 174, 812, 821, 911, 1253
MhlI GDGCHC 2 cut(s) 415, 1060
MluCI AATT 4 cut(s) 351, 509, 902, 911
MlyI GAGTC 7 cut(s) 26, 325, 608, 983, 1094, 1099, 1286
MmeI TCCRAC 3 cut(s) 172, 342, 813
MroI TCCGGA 1 cut(s) 340
MroXI GAANNNNTTC 2 cut(s) 225, 563
MseI TTAA 4 cut(s) 354, 630, 885, 1191
MspI CCGG 6 cut(s) 341, 467, 624, 758, 762, 1004
MspR9I CCNGG 2 cut(s) 625, 1261
MvaI CCWGG 1 cut(s) 1261
MwoI GCNNNNNNNGC 2 cut(s) 721, 775
NciI CCSGG 1 cut(s) 625
NcoI CCATGG 2 cut(s) 47, 249
NdeII GATC 5 cut(s) 186, 699, 802, 1180, 1250
NheI GCTAGC 1 cut(s) 52
NlaIII CATG 6 cut(s) 51, 253, 590, 1165, 1373, 1384
NlaIV GGNNCC 3 cut(s) 1059, 1230, 1330
NmeAIII GCCGAG 1 cut(s) 850
NmuCI GTSAC 4 cut(s) 62, 517, 986, 1414
NspV TTCGAA 2 cut(s) 545, 685
PaeR7I CTCGAG 2 cut(s) 80, 326
PdmI GAANNNNTTC 2 cut(s) 225, 563
PfeI GAWTC 3 cut(s) 532, 620, 819
PflFI GACNNNGTC 1 cut(s) 16
Ple19I CGATCG 1 cut(s) 189
PleI GAGTC 7 cut(s) 25, 325, 608, 983, 1093, 1099, 1285
PpsI GAGTC 7 cut(s) 25, 325, 608, 983, 1093, 1099, 1285
PpuMI RGGWCCY 1 cut(s) 1363
Psp5II RGGWCCY 1 cut(s) 1363
Psp6I CCWGG 1 cut(s) 1259
PspGI CCWGG 1 cut(s) 1259
PspN4I GGNNCC 3 cut(s) 1059, 1230, 1330
PspPI GGNCC 5 cut(s) 196, 455, 469, 1018, 1363
PspPPI RGGWCCY 1 cut(s) 1363
PsyI GACNNNGTC 1 cut(s) 16
PvuI CGATCG 1 cut(s) 189
RsaI GTAC 2 cut(s) 1230, 1340
RsaNI GTAC 2 cut(s) 1229, 1339
SaqAI TTAA 4 cut(s) 354, 630, 885, 1191
Sau3AI GATC 5 cut(s) 186, 699, 802, 1180, 1250
Sau96I GGNCC 5 cut(s) 196, 455, 469, 1018, 1363
SchI GAGTC 7 cut(s) 26, 325, 608, 983, 1094, 1099, 1286
ScrFI CCNGG 2 cut(s) 625, 1261
SduI GDGCHC 2 cut(s) 415, 1060
SfaNI GCATC 2 cut(s) 188, 411
SfcI CTRYAG 2 cut(s) 691, 747
Sfr274I CTCGAG 2 cut(s) 80, 326
SfuI TTCGAA 2 cut(s) 545, 685
SinI GGWCC 5 cut(s) 196, 455, 469, 1018, 1363
SlaI CTCGAG 2 cut(s) 80, 326
SmlI CTYRAG 2 cut(s) 80, 326
SmoI CTYRAG 2 cut(s) 80, 326
Sse9I AATT 4 cut(s) 351, 509, 902, 911
SsiI CCGC 3 cut(s) 481, 776, 1095
SspI AATATT 1 cut(s) 1074
SspMI CTAG 5 cut(s) 53, 386, 398, 816, 1197
StyD4I CCNGG 2 cut(s) 623, 1259
StyI CCWWGG 2 cut(s) 47, 249
TaaI ACNGT 7 cut(s) 262, 517, 552, 856, 1112, 1270, 1343
TaiI ACGT 2 cut(s) 219, 1153
TaqII GACCGA 1 cut(s) 1035
TasI AATT 4 cut(s) 351, 509, 902, 911
TatI WGTACW 1 cut(s) 1338
TfiI GAWTC 3 cut(s) 532, 620, 819
Tru1I TTAA 4 cut(s) 354, 630, 885, 1191
Tru9I TTAA 4 cut(s) 354, 630, 885, 1191
TscAI CASTG 4 cut(s) 520, 1115, 1287, 1348
TseFI GTSAC 4 cut(s) 62, 517, 986, 1414
Tsp45I GTSAC 4 cut(s) 62, 517, 986, 1414
TspDTI ATGAA 2 cut(s) 115, 572
TspRI CASTG 4 cut(s) 520, 1115, 1287, 1348
Tth111I GACNNNGTC 1 cut(s) 16
VpaK11BI GGWCC 5 cut(s) 196, 455, 469, 1018, 1363
XapI RAATTY 1 cut(s) 902
XcmI CCANNNNNNNNNTGG 2 cut(s) 1088, 1267
XhoI CTCGAG 2 cut(s) 80, 326
XmnI GAANNNNTTC 2 cut(s) 225, 563
XspI CTAG 5 cut(s) 53, 386, 398, 816, 1197
ZraI GACGTC 1 cut(s) 1151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.