AT4G39920

cofactor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011397
Physical Location & Seq
Forward (+)
18515693 .. 18517302
1610 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G39920.1

Sequence Viewer

Length: 1038 bp
ATGGAAGACGATGGTCAGAGCTCCGTCGCCGAAACCCTAGATCCGGCATTGCAGAAGAAGCACCATGATATGCTCGAGCGTCTCTCCGCTCGTCACCAAGCTCGAAAATCAGATTCACCTGACTCTTCCTCTTCGTCGTCCTCCACTCTTGAATCGACTTCCTCGTTTCTCGCTAAATTCTCCGATTCAAAGCGATCCATCGAGTCTCGGATCGCCGAGTCACGACTCGCTTCCTCCTCTACGGATTCGTCAAAGCTTAAGTCGGATCTTGCTGAGATCTCCGTAGCCATTGACAATCTCGAGAAGCTTCTCGCTGAGAACTCGTATTTTCTTCCTTCCTACGAGGTTCGATCCTCTCTGAAAATCGTATCCGATCTCAAACAGAGTCTCGACATTCTCTCCGGCGAGTTAGTCCCGAAGAAGAAATTCTCGTTCAAGAGCAAATCAACGACCAAAAAGCCGGAATCAAAACTCCCGGAGATACAGAAACCCGACGTCGTTTTACCTCCGAAACTCGTCCCCGTACGCGATTCTCCGGGATTGAGAAACAAACACGGAGAGACTCTTGTGAAAAGCTTCGAAGGCTCGTCGATCGGAGAATTCACATTGTCGGATCTTGATTCATGTCAAGTAAAATTAACAGGAACGGTCAACGCTCTGTTCCTTCACCGACTGAAGAAGTGTAGTGTCTACACAGGTCCAGTGATTGGTTCGATTCTGATTGATGACGTAGAAGATTGTGTTCTGGTATTGGCGTCGCATCAGATCAGAATCCATTGCGCTAGGAAGAGTGATTTCTACCTGAGAGTGAGGAGTCGTCCCATAATTGAAGACAGTAACGGTGTCAGATTTGCTCCTTATTGTTTGGATTACAAAGGGATTGATGAAGATTTGAAGACGGCTGGTTTGGAGGAGGAGACTAACAACTGGGCCAATGTGGATGATTTCCGGTGGCTGAGAGCTGTACAGTCGCCGAATTGGTCACTTTTGCCGGAAGAAGAAAGGGTCTCTTTGCTTACCATTTCCGGGGATTCTTGA

Protein Analysis

345

Amino Acids

38.31

Weight (kDa)

5.9

Isoelectric Point (pI)

56.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TBCC_N PF16752 26 - 141 6.5e-29 Tubulin-specific chaperone C N-terminal domain
TBCC PF07986 200 - 316 6.9e-39 Tubulin binding cofactor C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011397)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39920
fragaria_vesca FvH4_1g20700 FvH4_1g20700 FvH4_1g20700
malus_domestica MD01G1031400.v1.1 MD05G1043000.v1.1
prunus_persica Prupe.6G188100_v2.0.a1
pyrus_communis pycom01g05900
rosa_chinensis RchiOBHm_Chr2g0113151
rosa_laevigata RLG00000018047
rosa_multiflora Rmu_co8118374.1_g000001 Rmu_co8398113.1_g000001
rosa_roxburghii Rroxscaffold_2G00129570 Rroxscaffold_2G00129740
rosa_rugosa Rorug02G0185800
rosa_samantha Rh2AG240100 Rh2BG254000 Rh2CG244100 Rh2DG248000
rosa_wichuraiana Rw2G018790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 498
AccB7I CCANNNNNTGG 1 cut(s) 707
AccBSI CCGCTC 1 cut(s) 89
AccI GTMKAC 1 cut(s) 690
AccII CGCG 1 cut(s) 528
AciI CCGC 1 cut(s) 87
AclWI GGATC 6 cut(s) 35, 189, 218, 273, 345, 621
AcsI RAATTY 3 cut(s) 176, 425, 599
AcuI CTGAAG 1 cut(s) 695
AcyI GRCGYC 2 cut(s) 495, 755
AfaI GTAC 2 cut(s) 525, 966
AfiI CCNNNNNNNGG 3 cut(s) 43, 707, 1026
AflII CTTAAG 1 cut(s) 257
AgsI TTSAA 5 cut(s) 152, 189, 436, 830, 895
AluBI AGCT 6 cut(s) 21, 101, 256, 307, 576, 962
AluI AGCT 6 cut(s) 21, 101, 256, 307, 576, 962
Alw21I GWGCWC 1 cut(s) 23
Alw26I GTCTC 6 cut(s) 86, 210, 392, 554, 911, 1012
AlwI GGATC 6 cut(s) 35, 189, 218, 273, 345, 621
Ama87I CYCGRG 2 cut(s) 74, 299
AoxI GGCC 1 cut(s) 930
ApoI RAATTY 3 cut(s) 176, 425, 599
ArsI GACNNNNNNTTYG 4 cut(s) 245, 277, 889, 921
Asp700I GAANNNNTTC 2 cut(s) 425, 575
AspLEI GCGC 1 cut(s) 782
AspS9I GGNCC 2 cut(s) 698, 930
AsuC2I CCSGG 3 cut(s) 476, 537, 1027
AsuHPI GGTGA 3 cut(s) 86, 108, 659
AsuII TTCGAA 1 cut(s) 579
AvaI CYCGRG 2 cut(s) 74, 299
AvaII GGWCC 1 cut(s) 698
BanII GRGCYC 1 cut(s) 23
BbsI GAAGAC 3 cut(s) 12, 837, 902
Bbv12I GWGCWC 1 cut(s) 23
BccI CCATC 2 cut(s) 5, 206
BceAI ACGGC 1 cut(s) 915
BciVI GTATCC 1 cut(s) 379
BcnI CCSGG 3 cut(s) 476, 537, 1027
BcoDI GTCTC 6 cut(s) 86, 210, 392, 554, 911, 1012
BfaI CTAG 2 cut(s) 38, 783
BfrI CTTAAG 1 cut(s) 257
BfuI GTATCC 1 cut(s) 379
BglII AGATCT 1 cut(s) 276
Bme1390I CCNGG 3 cut(s) 476, 537, 1027
Bme18I GGWCC 1 cut(s) 698
BmeT110I CYCGRG 2 cut(s) 74, 299
BmgT120I GGNCC 2 cut(s) 698, 930
BmrFI CCNGG 3 cut(s) 476, 537, 1027
BmrI ACTGGG 1 cut(s) 937
BmsI GCATC 1 cut(s) 769
BmuI ACTGGG 1 cut(s) 937
BoxI GACNNNNGTC 1 cut(s) 12
BpiI GAAGAC 3 cut(s) 12, 837, 902
BplI GAGNNNNNCTC 2 cut(s) 68, 100
Bpu14I TTCGAA 1 cut(s) 579
BpuMI CCSGG 3 cut(s) 476, 537, 1027
BsaBI GATNNNNATC 1 cut(s) 770
BsaHI GRCGYC 2 cut(s) 495, 755
BsaI GGTCTC 1 cut(s) 1012
BsaJI CCNNGG 1 cut(s) 1026
BsaWI WCCGGW 1 cut(s) 948
BsaXI ACNNNNNCTCC 2 cut(s) 383, 413
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 707, 1026
Bse1I ACTGG 2 cut(s) 701, 932
Bse3DI GCAATG 2 cut(s) 47, 775
Bse8I GATNNNNATC 1 cut(s) 770
BseDI CCNNGG 1 cut(s) 1026
BseGI GGATG 1 cut(s) 946
BseJI GATNNNNATC 1 cut(s) 770
BseLI CCNNNNNNNGG 3 cut(s) 43, 707, 1026
BseMI GCAATG 2 cut(s) 47, 775
BseMII CTCAG 4 cut(s) 264, 306, 794, 947
BseNI ACTGG 2 cut(s) 701, 932
BseRI GAGGAG 4 cut(s) 226, 826, 926, 929
Bsh1236I CGCG 1 cut(s) 528
Bsh1285I CGRYCG 1 cut(s) 594
BshFI GGCC 1 cut(s) 932
BsiEI CGRYCG 1 cut(s) 594
BsiHKAI GWGCWC 1 cut(s) 23
BsiHKCI CYCGRG 2 cut(s) 74, 299
BsiSI CCGG 8 cut(s) 44, 402, 461, 476, 536, 949, 992, 1026
BsiWI CGTACG 1 cut(s) 523
BslFI GGGAC 3 cut(s) 398, 503, 804
BslI CCNNNNNNNGG 3 cut(s) 43, 707, 1026
BsmAI GTCTC 6 cut(s) 86, 210, 392, 554, 911, 1012
BsmBI CGTCTC 1 cut(s) 86
BsmFI GGGAC 3 cut(s) 398, 503, 804
BsnI GGCC 1 cut(s) 932
Bso31I GGTCTC 1 cut(s) 1012
BsoBI CYCGRG 2 cut(s) 74, 299
Bsp119I TTCGAA 1 cut(s) 579
Bsp1286I GDGCHC 1 cut(s) 23
Bsp1407I TGTACA 1 cut(s) 964
BspACI CCGC 1 cut(s) 87
BspANI GGCC 1 cut(s) 932
BspCNI CTCAG 4 cut(s) 265, 307, 795, 948
BspFNI CGCG 1 cut(s) 528
BspPI GGATC 6 cut(s) 35, 189, 218, 273, 345, 621
BspT104I TTCGAA 1 cut(s) 579
BspTI CTTAAG 1 cut(s) 257
BspTNI GGTCTC 1 cut(s) 1012
BsrBI CCGCTC 1 cut(s) 89
BsrDI GCAATG 2 cut(s) 47, 775
BsrGI TGTACA 1 cut(s) 964
BsrI ACTGG 2 cut(s) 701, 932
BssECI CCNNGG 1 cut(s) 1026
BssNI GRCGYC 2 cut(s) 495, 755
Bst4CI ACNGT 4 cut(s) 649, 836, 842, 969
Bst6I CTCTTC 3 cut(s) 130, 136, 782
BstACI GRCGYC 2 cut(s) 495, 755
BstAFI CTTAAG 1 cut(s) 257
BstAUI TGTACA 1 cut(s) 964
BstBI TTCGAA 1 cut(s) 579
BstDEI CTNAG 4 cut(s) 273, 315, 803, 956
BstF5I GGATG 1 cut(s) 946
BstFNI CGCG 1 cut(s) 528
BstHHI GCGC 1 cut(s) 782
BstMAI GTCTC 6 cut(s) 86, 210, 392, 554, 911, 1012
BstMCI CGRYCG 1 cut(s) 594
BstMWI GCNNNNNNNGC 2 cut(s) 58, 582
BstPAI GACNNNNGTC 1 cut(s) 12
BstSCI CCNGG 3 cut(s) 474, 535, 1025
BstUI CGCG 1 cut(s) 528
BstV2I GAAGAC 3 cut(s) 12, 837, 902
BstX2I RGATCY 4 cut(s) 40, 265, 276, 613
BstYI RGATCY 4 cut(s) 40, 265, 276, 613
BsuI GTATCC 1 cut(s) 379
BsuRI GGCC 1 cut(s) 932
BtsCI GGATG 1 cut(s) 946
BtsIMutI CAGTG 1 cut(s) 708
CfoI GCGC 1 cut(s) 782
Cfr13I GGNCC 2 cut(s) 698, 930
CseI GACGC 2 cut(s) 68, 744
Csp6I GTAC 2 cut(s) 524, 965
CviAII CATG 2 cut(s) 65, 624
CviQI GTAC 2 cut(s) 524, 965
DdeI CTNAG 4 cut(s) 273, 315, 803, 956
Eam1104I CTCTTC 3 cut(s) 130, 136, 782
EarI CTCTTC 3 cut(s) 130, 136, 782
Ecl136II GAGCTC 1 cut(s) 21
Eco24I GRGCYC 1 cut(s) 23
Eco31I GGTCTC 1 cut(s) 1012
Eco47I GGWCC 1 cut(s) 698
Eco53kI GAGCTC 1 cut(s) 21
Eco57I CTGAAG 1 cut(s) 695
Eco88I CYCGRG 2 cut(s) 74, 299
EcoICRI GAGCTC 1 cut(s) 21
EcoRI GAATTC 1 cut(s) 599
EcoT38I GRGCYC 1 cut(s) 23
Esp3I CGTCTC 1 cut(s) 86
FaeI CATG 2 cut(s) 68, 627
FaiI YATR 4 cut(s) 66, 71, 625, 824
FalI AAGNNNNNCTT 2 cut(s) 994, 1026
FaqI GGGAC 3 cut(s) 398, 503, 804
FatI CATG 2 cut(s) 64, 623
FblI GTMKAC 1 cut(s) 690
FokI GGATG 1 cut(s) 953
FriOI GRGCYC 1 cut(s) 23
FspBI CTAG 2 cut(s) 38, 783
GlaI GCGC 1 cut(s) 781
HaeIII GGCC 1 cut(s) 932
HapII CCGG 8 cut(s) 44, 402, 461, 476, 536, 949, 992, 1026
HgaI GACGC 2 cut(s) 68, 744
HhaI GCGC 1 cut(s) 782
Hin1I GRCGYC 2 cut(s) 495, 755
Hin1II CATG 2 cut(s) 68, 627
Hin6I GCGC 1 cut(s) 780
HinP1I GCGC 1 cut(s) 780
HincII GTYRAC 1 cut(s) 652
HindII GTYRAC 1 cut(s) 652
HindIII AAGCTT 3 cut(s) 254, 305, 574
HpaII CCGG 8 cut(s) 44, 402, 461, 476, 536, 949, 992, 1026
HphI GGTGA 3 cut(s) 86, 108, 659
Hpy166II GTNNAC 2 cut(s) 652, 691
Hpy188III TCNNGA 9 cut(s) 149, 222, 299, 301, 389, 415, 436, 617, 1035
Hpy8I GTNNAC 2 cut(s) 652, 691
Hpy99I CGWCG 6 cut(s) 29, 139, 497, 500, 592, 760
HpyAV CCTTC 3 cut(s) 345, 575, 674
HpyCH4III ACNGT 4 cut(s) 649, 836, 842, 969
HpyCH4IV ACGT 2 cut(s) 495, 729
HpyCH4V TGCA 1 cut(s) 52
HpyF10VI GCNNNNNNNGC 2 cut(s) 58, 582
HpyF3I CTNAG 4 cut(s) 273, 315, 803, 956
HpySE526I ACGT 2 cut(s) 495, 729
Hsp92I GRCGYC 2 cut(s) 495, 755
Hsp92II CATG 2 cut(s) 68, 627
HspAI GCGC 1 cut(s) 780
LmnI GCTCC 2 cut(s) 26, 859
LweI GCATC 1 cut(s) 769
MaeI CTAG 2 cut(s) 38, 783
MaeII ACGT 2 cut(s) 495, 729
MaeIII GTNAC 4 cut(s) 92, 219, 836, 981
MbiI CCGCTC 1 cut(s) 89
MflI RGATCY 4 cut(s) 40, 265, 276, 613
MhlI GDGCHC 1 cut(s) 23
MluCI AATT 6 cut(s) 176, 425, 599, 635, 825, 976
MlyI GAGTC 7 cut(s) 116, 212, 219, 227, 394, 556, 823
MmeI TCCRAC 2 cut(s) 243, 591
MroXI GAANNNNTTC 2 cut(s) 425, 575
MseI TTAA 2 cut(s) 258, 638
MspCI CTTAAG 1 cut(s) 257
MspI CCGG 8 cut(s) 44, 402, 461, 476, 536, 949, 992, 1026
MspR9I CCNGG 3 cut(s) 476, 537, 1027
MvnI CGCG 1 cut(s) 528
MwoI GCNNNNNNNGC 2 cut(s) 58, 582
NciI CCSGG 3 cut(s) 476, 537, 1027
NlaIII CATG 2 cut(s) 68, 627
NmeAIII GCCGAG 1 cut(s) 241
NmuCI GTSAC 3 cut(s) 92, 219, 981
NspV TTCGAA 1 cut(s) 579
PaeR7I CTCGAG 2 cut(s) 74, 299
PcsI WCGNNNNNNNCGW 1 cut(s) 161
PdmI GAANNNNTTC 2 cut(s) 425, 575
Pfl23II CGTACG 1 cut(s) 523
PflMI CCANNNNNTGG 1 cut(s) 707
PfoI TCCNGGA 2 cut(s) 474, 535
Ple19I CGATCG 1 cut(s) 594
PleI GAGTC 7 cut(s) 116, 211, 219, 226, 393, 556, 822
PpsI GAGTC 7 cut(s) 116, 211, 219, 226, 393, 556, 822
PshAI GACNNNNGTC 1 cut(s) 12
Psp124BI GAGCTC 1 cut(s) 23
PspLI CGTACG 1 cut(s) 523
PspPI GGNCC 2 cut(s) 698, 930
PspXI VCTCGAGB 1 cut(s) 74
PsuI RGATCY 4 cut(s) 40, 265, 276, 613
PvuI CGATCG 1 cut(s) 594
RsaI GTAC 2 cut(s) 525, 966
RsaNI GTAC 2 cut(s) 524, 965
SacI GAGCTC 1 cut(s) 23
SaqAI TTAA 2 cut(s) 258, 638
Sau96I GGNCC 2 cut(s) 698, 930
SchI GAGTC 7 cut(s) 116, 212, 219, 227, 394, 556, 823
ScrFI CCNGG 3 cut(s) 476, 537, 1027
SduI GDGCHC 1 cut(s) 23
SfaNI GCATC 1 cut(s) 769
Sfr274I CTCGAG 2 cut(s) 74, 299
SfuI TTCGAA 1 cut(s) 579
SinI GGWCC 1 cut(s) 698
SlaI CTCGAG 2 cut(s) 74, 299
SmlI CTYRAG 3 cut(s) 74, 257, 299
SmoI CTYRAG 3 cut(s) 74, 257, 299
Sse9I AATT 6 cut(s) 176, 425, 599, 635, 825, 976
SsiI CCGC 1 cut(s) 87
SspMI CTAG 2 cut(s) 38, 783
SstI GAGCTC 1 cut(s) 23
StyD4I CCNGG 3 cut(s) 474, 535, 1025
TaaI ACNGT 4 cut(s) 649, 836, 842, 969
TaiI ACGT 2 cut(s) 498, 732
TasI AATT 6 cut(s) 176, 425, 599, 635, 825, 976
TatI WGTACW 1 cut(s) 964
Tru1I TTAA 2 cut(s) 258, 638
Tru9I TTAA 2 cut(s) 258, 638
TscAI CASTG 1 cut(s) 708
TseFI GTSAC 3 cut(s) 92, 219, 981
Tsp45I GTSAC 3 cut(s) 92, 219, 981
TspDTI ATGAA 2 cut(s) 612, 900
TspGWI ACGGA 4 cut(s) 13, 257, 271, 570
TspRI CASTG 1 cut(s) 708
Van91I CCANNNNNTGG 1 cut(s) 707
Vha464I CTTAAG 1 cut(s) 257
VpaK11BI GGWCC 1 cut(s) 698
XapI RAATTY 3 cut(s) 176, 425, 599
XhoI CTCGAG 2 cut(s) 74, 299
XmiI GTMKAC 1 cut(s) 690
XmnI GAANNNNTTC 2 cut(s) 425, 575
XspI CTAG 2 cut(s) 38, 783
ZraI GACGTC 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.