Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0011397

Physical Location & Seq

Genomic Coordinates Forward (+)

19635808 .. 19637029

Gene Structure 1222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G188100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGAAAATGAAGAAGAAGCAGCTCTCTCGTCTAGCCCTAATCCCCTAGATGTGGACCCAGCCCTCCAAAAGAAGCACCAATCAATGCTCGACCGTCTCACCAACCGTCACCAAACTCGCTTAGGCAGCTCACTCACCCGCCGATCCGCGGAGTCCGACTCGTCCTCTTCTCCTTCCTTTGAGTCCACATCAACCTTCCTTTCCCGTTTTTCCAACTCCAAGAGCTCCATCGAGTCTCAACTCGCTCAATGTCGATTCGGACTCTCCGAGTCGACTCAAGTCAAACCCCAGCTCGACCAAATCTCCTCCTCCATCTCCGATCTCGAGAAGCTCGTCGCCGAGAACTCGTATTTTTTACCCTCGTACGAAGTTCGGTCCTCGCTCAAAACGATATCAGATTTGAGGCAAAGTCTCGAGATTTTGAGCTCCGAGTTATTACCCAAGAAGAAATTCGCTTTCAAGAACAAACCCACCAGAAAAGACCCAATCTTCGAATCCAAAGAGCAGGAGGAAGAGAAGAAACCTGAGAAACCCGGTTTCAGGGTTCCGGAGTCCCCGGGTTTTTGGAACAAGAAAGGCGAGATTTTGGTGCATAAATTTAAGGGATCGGAATTGGGAGAATTTACGATTGCGGACCTTGATTCCTGTGAGGTGAGGCTAACAGGTTCTGTGAGAGCGCTTTTTGTTCATAGATTAAGGAACTGTAAGGTTTATACAGGCCCTGTAACGGGTTCGGTTCTAATTGATGGGGTTGAAAGATGTGTTTTTATAATGGCGTCGCATCAAATTCGGATTCACAATGCAAAAAGGAGTGATTTTTATCTGAGGGTGAGGAGCCGGCCTATAATTGAGGACAGTTGCGGCGTGAGGTTTGCGCCATACTGTTTGAGCTATCAAGGGATTGAGGACGAGCTTAGGGAGGCCAGTCTTGATGGGGAGACGAAGAATTGGAGCAATGTGGATGATTTCCTCTGGTTGCGGGCGGTTCAGTCGCCAAATTGGTCAATTTTGCCGGAGGATGAGAGAGTTGGTCTAGTTGATATTTCAAATTCCGAGGAGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005929 GO:0006457 GO:0006996 GO:0007010 GO:0007017 GO:0007021 GO:0008150 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022607 GO:0032391 GO:0034622 GO:0035869 GO:0042995 GO:0043005 GO:0043226 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044441 GO:0044444 GO:0044463 GO:0044464 GO:0065003 GO:0071840 GO:0097458 GO:0097730 GO:0097731 GO:0097733 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TBCC TBCC_N

Protein Analysis

355

Amino Acids

40.05

Weight (kDa)

5.85

Isoelectric Point (pI)

66.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39920
fragaria_vesca	FvH4_1g20700 FvH4_1g20700 FvH4_1g20700
malus_domestica	MD01G1031400.v1.1 MD05G1043000.v1.1
prunus_persica	Prupe.6G188100_v2.0.a1
pyrus_communis	pycom01g05900
rosa_chinensis	RchiOBHm_Chr2g0113151
rosa_laevigata	RLG00000018047
rosa_multiflora	Rmu_co8118374.1_g000001 Rmu_co8398113.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129570 Rroxscaffold_2G00129740
rosa_rugosa	Rorug02G0185800
rosa_samantha	Rh2AG240100 Rh2BG254000 Rh2CG244100 Rh2DG248000
rosa_wichuraiana	Rw2G018790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	770
AccI	GTMKAC	1 cut(s)	272
AccII	CGCG	1 cut(s)	149
AccIII	TCCGGA	1 cut(s)	547
AciI	CCGC	7 cut(s)	139, 147, 149, 632, 861, 979, 983
AclWI	GGATC	2 cut(s)	138, 613
AcsI	RAATTY	5 cut(s)	449, 596, 620, 786, 1048
AcyI	GRCGYC	1 cut(s)	776
AfaI	GTAC	1 cut(s)	365
AfeI	AGCGCT	1 cut(s)	678
AfiI	CCNNNNNNNGG	5 cut(s)	52, 148, 540, 727, 728
AgsI	TTSAA	3 cut(s)	460, 755, 1047
AjuI	GAANNNNNNNTTGG	2 cut(s)	434, 466
AluBI	AGCT	8 cut(s)	23, 129, 225, 292, 331, 426, 891, 913
AluI	AGCT	8 cut(s)	23, 129, 225, 292, 331, 426, 891, 913
Alw21I	GWGCWC	2 cut(s)	227, 428
Alw26I	GTCTC	4 cut(s)	101, 240, 416, 932
AlwI	GGATC	2 cut(s)	138, 613
AlwNI	CAGNNNCTG	2 cut(s)	668, 722
Ama87I	CYCGRG	3 cut(s)	323, 413, 556
Aor13HI	TCCGGA	1 cut(s)	547
Aor51HI	AGCGCT	1 cut(s)	678
AoxI	GGCC	3 cut(s)	718, 839, 921
ApeKI	GCWGC	2 cut(s)	20, 126
ApoI	RAATTY	5 cut(s)	449, 596, 620, 786, 1048
ArsI	GACNNNNNNTTYG	2 cut(s)	473, 505
Asp700I	GAANNNNTTC	1 cut(s)	449
AspLEI	GCGC	2 cut(s)	679, 877
AspS9I	GGNCC	4 cut(s)	55, 375, 634, 719
AsuC2I	CCSGG	3 cut(s)	534, 557, 558
AsuHPI	GGTGA	5 cut(s)	91, 101, 127, 664, 841
AsuII	TTCGAA	1 cut(s)	492
AvaI	CYCGRG	3 cut(s)	323, 413, 556
AvaII	GGWCC	3 cut(s)	55, 375, 634
BanII	GRGCYC	2 cut(s)	227, 428
Bbv12I	GWGCWC	2 cut(s)	227, 428
BbvI	GCAGC	2 cut(s)	32, 138
BccI	CCATC	4 cut(s)	236, 320, 740, 926
BcgI	CGANNNNNNTGC	4 cut(s)	9, 43, 770, 804
BcnI	CCSGG	3 cut(s)	534, 557, 558
BcoDI	GTCTC	4 cut(s)	101, 240, 416, 932
BfaI	CTAG	3 cut(s)	33, 47, 1034
BfoI	RGCGCY	1 cut(s)	680
BisI	GCNGC	3 cut(s)	21, 127, 862
BlsI	GCNGC	3 cut(s)	22, 128, 863
Bme1390I	CCNGG	3 cut(s)	534, 557, 558
Bme18I	GGWCC	3 cut(s)	55, 375, 634
BmeT110I	CYCGRG	3 cut(s)	323, 413, 556
BmgT120I	GGNCC	4 cut(s)	55, 375, 634, 719
BmiI	GGNNCC	3 cut(s)	57, 546, 836
BmrFI	CCNGG	3 cut(s)	534, 557, 558
BmsI	GCATC	1 cut(s)	790
BoxI	GACNNNNGTC	1 cut(s)	278
BplI	GAGNNNNNCTC	2 cut(s)	143, 175
Bpu10I	CCTNAGC	2 cut(s)	121, 914
Bpu14I	TTCGAA	1 cut(s)	492
BpuEI	CTTGAG	1 cut(s)	261
BpuMI	CCSGG	3 cut(s)	534, 557, 558
BsaBI	GATNNNNATC	1 cut(s)	819
BsaHI	GRCGYC	1 cut(s)	776
BsaJI	CCNNGG	4 cut(s)	147, 555, 556, 1053
BsaWI	WCCGGW	1 cut(s)	547
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bsc4I	CCNNNNNNNGG	5 cut(s)	52, 148, 540, 727, 728
Bse118I	RCCGGY	1 cut(s)	837
Bse1I	ACTGG	1 cut(s)	924
Bse3DI	GCAATG	1 cut(s)	961
Bse8I	GATNNNNATC	1 cut(s)	819
BseAI	TCCGGA	1 cut(s)	547
BseDI	CCNNGG	4 cut(s)	147, 555, 556, 1053
BseGI	GGATG	2 cut(s)	967, 1024
BseJI	GATNNNNATC	1 cut(s)	819
BseLI	CCNNNNNNNGG	5 cut(s)	52, 148, 540, 727, 728
BseMI	GCAATG	1 cut(s)	961
BseMII	CTCAG	2 cut(s)	516, 815
BseNI	ACTGG	1 cut(s)	924
BseRI	GAGGAG	3 cut(s)	295, 298, 847
BseXI	GCAGC	2 cut(s)	32, 138
BseYI	CCCAGC	2 cut(s)	58, 288
Bsh1236I	CGCG	1 cut(s)	149
Bsh1285I	CGRYCG	1 cut(s)	94
BshFI	GGCC	3 cut(s)	720, 841, 923
BsiEI	CGRYCG	1 cut(s)	94
BsiHKAI	GWGCWC	2 cut(s)	227, 428
BsiHKCI	CYCGRG	3 cut(s)	323, 413, 556
BsiSI	CCGG	5 cut(s)	534, 548, 557, 838, 1013
BsiWI	CGTACG	1 cut(s)	363
BslFI	GGGAC	1 cut(s)	538
BslI	CCNNNNNNNGG	5 cut(s)	52, 148, 540, 727, 728
BsmAI	GTCTC	4 cut(s)	101, 240, 416, 932
BsmBI	CGTCTC	2 cut(s)	101, 932
BsmFI	GGGAC	1 cut(s)	538
BsnI	GGCC	3 cut(s)	720, 841, 923
BsoBI	CYCGRG	3 cut(s)	323, 413, 556
Bsp119I	TTCGAA	1 cut(s)	492
Bsp1286I	GDGCHC	2 cut(s)	227, 428
Bsp13I	TCCGGA	1 cut(s)	547
Bsp143I	GATC	3 cut(s)	143, 319, 605
BspACI	CCGC	7 cut(s)	139, 147, 149, 632, 861, 979, 983
BspANI	GGCC	3 cut(s)	720, 841, 923
BspCNI	CTCAG	2 cut(s)	517, 816
BspEI	TCCGGA	1 cut(s)	547
BspFNI	CGCG	1 cut(s)	149
BspLI	GGNNCC	3 cut(s)	57, 546, 836
BspPI	GGATC	2 cut(s)	138, 613
BspT104I	TTCGAA	1 cut(s)	492
BsrDI	GCAATG	1 cut(s)	961
BsrFI	RCCGGY	1 cut(s)	837
BsrI	ACTGG	1 cut(s)	924
BssAI	RCCGGY	1 cut(s)	837
BssECI	CCNNGG	4 cut(s)	147, 555, 556, 1053
BssMI	GATC	3 cut(s)	143, 319, 605
BssNI	GRCGYC	1 cut(s)	776
Bst4CI	ACNGT	5 cut(s)	95, 107, 704, 857, 884
Bst6I	CTCTTC	2 cut(s)	172, 507
BstACI	GRCGYC	1 cut(s)	776
BstBI	TTCGAA	1 cut(s)	492
BstC8I	GCNNGC	2 cut(s)	839, 981
BstDEI	CTNAG	4 cut(s)	121, 525, 824, 914
BstDSI	CCRYGG	1 cut(s)	147
BstF5I	GGATG	2 cut(s)	967, 1024
BstFNI	CGCG	1 cut(s)	149
BstH2I	RGCGCY	1 cut(s)	680
BstHHI	GCGC	2 cut(s)	679, 877
BstKTI	GATC	3 cut(s)	146, 322, 608
BstMAI	GTCTC	4 cut(s)	101, 240, 416, 932
BstMBI	GATC	3 cut(s)	143, 319, 605
BstMCI	CGRYCG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstPAI	GACNNNNGTC	1 cut(s)	278
BstSCI	CCNGG	3 cut(s)	532, 555, 556
BstUI	CGCG	1 cut(s)	149
BstV1I	GCAGC	2 cut(s)	32, 138
BsuRI	GGCC	3 cut(s)	720, 841, 923
BtgI	CCRYGG	1 cut(s)	147
BtsCI	GGATG	2 cut(s)	967, 1024
Cac8I	GCNNGC	2 cut(s)	839, 981
CaiI	CAGNNNCTG	2 cut(s)	668, 722
CfoI	GCGC	2 cut(s)	679, 877
Cfr10I	RCCGGY	1 cut(s)	837
Cfr13I	GGNCC	4 cut(s)	55, 375, 634, 719
Cfr42I	CCGCGG	1 cut(s)	150
Cfr9I	CCCGGG	1 cut(s)	556
CseI	GACGC	1 cut(s)	765
Csp6I	GTAC	1 cut(s)	364
CviQI	GTAC	1 cut(s)	364
DdeI	CTNAG	4 cut(s)	121, 525, 824, 914
DpnI	GATC	3 cut(s)	145, 321, 607
DpnII	GATC	3 cut(s)	143, 319, 605
Eam1104I	CTCTTC	2 cut(s)	172, 507
EarI	CTCTTC	2 cut(s)	172, 507
Ecl136II	GAGCTC	2 cut(s)	225, 426
Eco24I	GRGCYC	2 cut(s)	227, 428
Eco32I	GATATC	1 cut(s)	393
Eco47I	GGWCC	3 cut(s)	55, 375, 634
Eco47III	AGCGCT	1 cut(s)	678
Eco53kI	GAGCTC	2 cut(s)	225, 426
Eco88I	CYCGRG	3 cut(s)	323, 413, 556
EcoICRI	GAGCTC	2 cut(s)	225, 426
EcoO109I	RGGNCCY	1 cut(s)	719
EcoRV	GATATC	1 cut(s)	393
EcoT38I	GRGCYC	2 cut(s)	227, 428
Esp3I	CGTCTC	2 cut(s)	101, 932
FaiI	YATR	6 cut(s)	594, 690, 714, 770, 845, 880
FaqI	GGGAC	1 cut(s)	538
FauI	CCCGC	2 cut(s)	146, 972
FblI	GTMKAC	1 cut(s)	272
Fnu4HI	GCNGC	3 cut(s)	21, 127, 862
FokI	GGATG	2 cut(s)	974, 1031
FriOI	GRGCYC	2 cut(s)	227, 428
Fsp4HI	GCNGC	3 cut(s)	21, 127, 862
FspBI	CTAG	3 cut(s)	33, 47, 1034
GlaI	GCGC	2 cut(s)	678, 876
GluI	GCNGC	3 cut(s)	21, 127, 862
GsaI	CCCAGC	2 cut(s)	62, 292
HaeII	RGCGCY	1 cut(s)	680
HaeIII	GGCC	3 cut(s)	720, 841, 923
HapII	CCGG	5 cut(s)	534, 548, 557, 838, 1013
HgaI	GACGC	1 cut(s)	765
HhaI	GCGC	2 cut(s)	679, 877
Hin1I	GRCGYC	1 cut(s)	776
Hin6I	GCGC	2 cut(s)	677, 875
HinP1I	GCGC	2 cut(s)	677, 875
HincII	GTYRAC	1 cut(s)	273
HindII	GTYRAC	1 cut(s)	273
HpaII	CCGG	5 cut(s)	534, 548, 557, 838, 1013
HphI	GGTGA	5 cut(s)	91, 101, 127, 664, 841
Hpy166II	GTNNAC	3 cut(s)	55, 186, 273
Hpy188III	TCNNGA	7 cut(s)	323, 325, 413, 415, 460, 548, 929
Hpy8I	GTNNAC	3 cut(s)	55, 186, 273
Hpy99I	CGWCG	2 cut(s)	338, 781
HpyAV	CCTTC	2 cut(s)	183, 205
HpyCH4III	ACNGT	5 cut(s)	95, 107, 704, 857, 884
HpyCH4V	TGCA	2 cut(s)	592, 803
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	4 cut(s)	121, 525, 824, 914
Hsp92I	GRCGYC	1 cut(s)	776
HspAI	GCGC	2 cut(s)	677, 875
Kpn2I	TCCGGA	1 cut(s)	547
KroI	GCCGGC	1 cut(s)	837
KroNI	GCCGGC	1 cut(s)	839
KspI	CCGCGG	1 cut(s)	150
Kzo9I	GATC	3 cut(s)	143, 319, 605
LmnI	GCTCC	4 cut(s)	230, 431, 834, 951
Lsp1109I	GCAGC	2 cut(s)	32, 138
LweI	GCATC	1 cut(s)	790
MaeI	CTAG	3 cut(s)	33, 47, 1034
MaeIII	GTNAC	2 cut(s)	107, 724
MalI	GATC	3 cut(s)	145, 321, 607
MboI	GATC	3 cut(s)	143, 319, 605
MboII	GAAGA	8 cut(s)	23, 26, 159, 457, 481, 524, 529, 955
MhlI	GDGCHC	2 cut(s)	227, 428
MlyI	GAGTC	8 cut(s)	152, 161, 191, 242, 255, 268, 278, 560
MmeI	TCCRAC	2 cut(s)	180, 237
MroI	TCCGGA	1 cut(s)	547
MroNI	GCCGGC	1 cut(s)	837
MroXI	GAANNNNTTC	1 cut(s)	449
MseI	TTAA	2 cut(s)	600, 695
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	5 cut(s)	534, 548, 557, 838, 1013
MspR9I	CCNGG	3 cut(s)	534, 557, 558
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	1 cut(s)	126
NaeI	GCCGGC	1 cut(s)	839
NciI	CCSGG	3 cut(s)	534, 557, 558
NdeII	GATC	3 cut(s)	143, 319, 605
NgoMIV	GCCGGC	1 cut(s)	837
NlaIV	GGNNCC	3 cut(s)	57, 546, 836
NmeAIII	GCCGAG	1 cut(s)	364
NmuCI	GTSAC	1 cut(s)	107
NspV	TTCGAA	1 cut(s)	492
PaeR7I	CTCGAG	2 cut(s)	323, 413
PcsI	WCGNNNNNNNCGW	3 cut(s)	264, 330, 386
PdiI	GCCGGC	1 cut(s)	839
PdmI	GAANNNNTTC	1 cut(s)	449
PfeI	GAWTC	4 cut(s)	255, 494, 641, 793
Pfl23II	CGTACG	1 cut(s)	363
PkrI	GCNGC	3 cut(s)	22, 128, 863
PleI	GAGTC	8 cut(s)	152, 160, 190, 241, 255, 268, 277, 559
PpsI	GAGTC	8 cut(s)	152, 160, 190, 241, 255, 268, 277, 559
PshAI	GACNNNNGTC	1 cut(s)	278
PsiI	TTATAA	1 cut(s)	770
Psp124BI	GAGCTC	2 cut(s)	227, 428
PspFI	CCCAGC	2 cut(s)	58, 288
PspLI	CGTACG	1 cut(s)	363
PspN4I	GGNNCC	3 cut(s)	57, 546, 836
PspPI	GGNCC	4 cut(s)	55, 375, 634, 719
PstNI	CAGNNNCTG	2 cut(s)	668, 722
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
SacI	GAGCTC	2 cut(s)	227, 428
SacII	CCGCGG	1 cut(s)	150
SalI	GTCGAC	1 cut(s)	271
SaqAI	TTAA	2 cut(s)	600, 695
SatI	GCNGC	3 cut(s)	21, 127, 862
Sau3AI	GATC	3 cut(s)	143, 319, 605
Sau96I	GGNCC	4 cut(s)	55, 375, 634, 719
SchI	GAGTC	8 cut(s)	152, 161, 191, 242, 255, 268, 278, 560
ScrFI	CCNGG	3 cut(s)	534, 557, 558
SduI	GDGCHC	2 cut(s)	227, 428
SfaNI	GCATC	1 cut(s)	790
Sfr274I	CTCGAG	2 cut(s)	323, 413
Sfr303I	CCGCGG	1 cut(s)	150
SfuI	TTCGAA	1 cut(s)	492
SgrBI	CCGCGG	1 cut(s)	150
SinI	GGWCC	3 cut(s)	55, 375, 634
SlaI	CTCGAG	2 cut(s)	323, 413
SmaI	CCCGGG	1 cut(s)	558
SmlI	CTYRAG	3 cut(s)	276, 323, 413
SmoI	CTYRAG	3 cut(s)	276, 323, 413
SsiI	CCGC	7 cut(s)	139, 147, 149, 632, 861, 979, 983
SspMI	CTAG	3 cut(s)	33, 47, 1034
SstI	GAGCTC	2 cut(s)	227, 428
StyD4I	CCNGG	3 cut(s)	532, 555, 556
TaaI	ACNGT	5 cut(s)	95, 107, 704, 857, 884
TaqI	TCGA	8 cut(s)	90, 231, 253, 272, 294, 324, 414, 492
TaqII	GACCGA	1 cut(s)	363
TauI	GCSGC	1 cut(s)	864
TfiI	GAWTC	4 cut(s)	255, 494, 641, 793
Tru1I	TTAA	2 cut(s)	600, 695
Tru9I	TTAA	2 cut(s)	600, 695
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	2 cut(s)	20, 126
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	2 cut(s)	24, 677
TspMI	CCCGGG	1 cut(s)	556
VpaK11BI	GGWCC	3 cut(s)	55, 375, 634
XapI	RAATTY	5 cut(s)	449, 596, 620, 786, 1048
XhoI	CTCGAG	2 cut(s)	323, 413
XmaI	CCCGGG	1 cut(s)	556
XmiI	GTMKAC	1 cut(s)	272
XmnI	GAANNNNTTC	1 cut(s)	449
XspI	CTAG	3 cut(s)	33, 47, 1034

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.