RLG00000018047

Tubulin-folding cofactor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0011397
Physical Location & Seq
Reverse (-)
24812758 .. 24813801
1044 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018047

Sequence Viewer

Length: 1044 bp
ATGGAAAATGAACCATCAAACCCTACCCAAGAAGAAGCCCTAGATTCCGATCCAGCTCTCAAAAAGAAGCACCAATCCATGCTCGACCGCCTCACCCACCGCCACCAATCCCGCCTCGACACCACCCTCACGCGCCGCGCCGCCGCCGACTCCTCCGACCCCTCCCCTTCCTTCGAGTCCACCTCCGCCTTCCTCTCCCGCTTCTCCACCTCCAAGTCCTCCGTCGACTCCCAACTCGCTCAGTGCCGACTCACCGATCCCGCTCACTTCAAACCCCACCTCGACCAAATCTCCGCCTCCATCTCCGACCTCGAGAAGCTCGTCGCCGAGAACTCCTACTTCCTCCCCTCGTACGAAGTCCGATCGTCGCTCAAAACGATCTCCGATCTGAGACAAACCCTAGAGAACCTGAGCGCAGAGTTATTGCCGAAGAAGAAATTCTCTTTCAGAAACAAAGGCGCCAAGAAAACCGAGCCAAAGGAGAAGGAGAACGAGAAAGAGCCGGAGAAAATGGAATTCATAGTTCCGACGTCGCCGGGGATTTGGAACAAGAAGGGGGAGACCTTAGTGAGGAAGTTTCAGTGCTCGGAAGTCGGAGAATTCACAATTTCGGACCTGGATTCCTGCGAGGTGAGGCTTATGGGGTCTGTGAGGGCTCTATTTGTTCATAGGTTGAGGAATTGTAGGGTTTATACTGGCCCTGTGACCGGTTCGGTTCTGATTGAAGGAGTTGAAGAGTGTGTATTTGTTATGGCTTCACATCAGATTCGAATTCATAATGCAAAAAGGTGTGATTTTTATCTGAGAGTGAGGAGCAGGCCTATAATTGAGGATAGCTGCAGCGTGAGGTTTGCGCCATACTGTTTGAGGTATAATGGGATTGAGGAAGAGCTTAGGGAGACTAGTCTTGATGAGGAGACGGAGAATTGGGCCAATGTGGATGACTTCTTGTGGTTGAGGGCAGTTCAGTCGCCGAATTGGTCTGTCTTGCCGAAGAATGAGAGAGTTGGTTTGATAGATATTTCGAGTTCGGAGGAAAGTTAA

Protein Analysis

348

Amino Acids

39.56

Weight (kDa)

5.87

Isoelectric Point (pI)

58.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TBCC_N PF16752 29 - 145 4.4e-31 Tubulin-specific chaperone C N-terminal domain
TBCC PF07986 200 - 316 5.7e-39 Tubulin binding cofactor C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011397)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39920
fragaria_vesca FvH4_1g20700 FvH4_1g20700 FvH4_1g20700
malus_domestica MD01G1031400.v1.1 MD05G1043000.v1.1
prunus_persica Prupe.6G188100_v2.0.a1
pyrus_communis pycom01g05900
rosa_chinensis RchiOBHm_Chr2g0113151
rosa_laevigata RLG00000018047
rosa_multiflora Rmu_co8118374.1_g000001 Rmu_co8398113.1_g000001
rosa_roxburghii Rroxscaffold_2G00129570 Rroxscaffold_2G00129740
rosa_rugosa Rorug02G0185800
rosa_samantha Rh2AG240100 Rh2BG254000 Rh2CG244100 Rh2DG248000
rosa_wichuraiana Rw2G018790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 533
AccB1I GGYRCC 1 cut(s) 458
AccBSI CCGCTC 1 cut(s) 263
AccI GTMKAC 1 cut(s) 225
AccII CGCG 2 cut(s) 133, 138
AclWI GGATC 2 cut(s) 44, 251
AcsI RAATTY 4 cut(s) 437, 515, 599, 771
AcyI GRCGYC 2 cut(s) 459, 530
AfaI GTAC 1 cut(s) 353
AfiI CCNNNNNNNGG 2 cut(s) 570, 707
AgeI ACCGGT 1 cut(s) 707
AgsI TTSAA 3 cut(s) 271, 725, 734
AhlI ACTAGT 1 cut(s) 902
AjnI CCWGG 1 cut(s) 615
AluBI AGCT 4 cut(s) 56, 319, 837, 892
AluI AGCT 4 cut(s) 56, 319, 837, 892
Alw21I GWGCWC 1 cut(s) 587
Alw26I GTCTC 4 cut(s) 385, 554, 893, 911
AlwI GGATC 2 cut(s) 44, 251
Ama87I CYCGRG 1 cut(s) 311
AoxI GGCC 3 cut(s) 697, 818, 930
ApeKI GCWGC 2 cut(s) 837, 840
ApoI RAATTY 4 cut(s) 437, 515, 599, 771
AsiGI ACCGGT 1 cut(s) 707
Asp700I GAANNNNTTC 1 cut(s) 437
AspLEI GCGC 5 cut(s) 135, 140, 416, 461, 856
AspS9I GGNCC 3 cut(s) 613, 698, 930
AsuC2I CCSGG 1 cut(s) 537
AsuHPI GGTGA 3 cut(s) 85, 244, 643
AsuII TTCGAA 1 cut(s) 769
AvaI CYCGRG 1 cut(s) 311
AvaII GGWCC 1 cut(s) 613
BanI GGYRCC 1 cut(s) 458
BanII GRGCYC 1 cut(s) 658
Bbv12I GWGCWC 1 cut(s) 587
BbvI GCAGC 2 cut(s) 824, 852
BccI CCATC 2 cut(s) 22, 308
BcgI CGANNNNNNTGC 2 cut(s) 951, 985
BciT130I CCWGG 1 cut(s) 617
BcnI CCSGG 1 cut(s) 537
BcoDI GTCTC 4 cut(s) 385, 554, 893, 911
BcuI ACTAGT 1 cut(s) 902
BfaI CTAG 3 cut(s) 41, 401, 903
BfmI CTRYAG 1 cut(s) 838
BfoI RGCGCY 1 cut(s) 462
BisI GCNGC 5 cut(s) 136, 141, 144, 838, 841
BlsI GCNGC 5 cut(s) 137, 142, 145, 839, 842
Bme1390I CCNGG 2 cut(s) 537, 617
Bme18I GGWCC 1 cut(s) 613
BmeT110I CYCGRG 1 cut(s) 311
BmgT120I GGNCC 3 cut(s) 613, 698, 930
BmiI GGNNCC 1 cut(s) 460
BmrFI CCNGG 2 cut(s) 537, 617
BplI GAGNNNNNCTC 2 cut(s) 167, 199
Bpu10I CCTNAGC 2 cut(s) 410, 893
Bpu14I TTCGAA 1 cut(s) 769
BpuMI CCSGG 1 cut(s) 537
BsaBI GATNNNNATC 2 cut(s) 48, 798
BsaHI GRCGYC 2 cut(s) 459, 530
BsaI GGTCTC 1 cut(s) 554
BsaJI CCNNGG 1 cut(s) 536
BsaWI WCCGGW 1 cut(s) 707
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bsc4I CCNNNNNNNGG 2 cut(s) 570, 707
Bse118I RCCGGY 1 cut(s) 707
Bse1I ACTGG 1 cut(s) 700
Bse8I GATNNNNATC 2 cut(s) 48, 798
BseBI CCWGG 1 cut(s) 617
BseDI CCNNGG 1 cut(s) 536
BseGI GGATG 1 cut(s) 946
BseJI GATNNNNATC 2 cut(s) 48, 798
BseLI CCNNNNNNNGG 2 cut(s) 570, 707
BseMII CTCAG 4 cut(s) 254, 380, 401, 794
BseNI ACTGG 1 cut(s) 700
BseRI GAGGAG 3 cut(s) 142, 826, 929
BseXI GCAGC 2 cut(s) 824, 852
Bsh1236I CGCG 2 cut(s) 133, 138
Bsh1285I CGRYCG 2 cut(s) 88, 365
BshFI GGCC 3 cut(s) 699, 820, 932
BshNI GGYRCC 1 cut(s) 458
BshTI ACCGGT 1 cut(s) 707
BsiEI CGRYCG 2 cut(s) 88, 365
BsiHKAI GWGCWC 1 cut(s) 587
BsiHKCI CYCGRG 1 cut(s) 311
BsiSI CCGG 3 cut(s) 503, 536, 708
BsiWI CGTACG 1 cut(s) 351
BslI CCNNNNNNNGG 2 cut(s) 570, 707
BsmAI GTCTC 4 cut(s) 385, 554, 893, 911
BsmBI CGTCTC 1 cut(s) 911
BsnI GGCC 3 cut(s) 699, 820, 932
Bso31I GGTCTC 1 cut(s) 554
BsoBI CYCGRG 1 cut(s) 311
Bsp119I TTCGAA 1 cut(s) 769
Bsp1286I GDGCHC 2 cut(s) 587, 658
Bsp143I GATC 5 cut(s) 49, 256, 362, 378, 385
BspANI GGCC 3 cut(s) 699, 820, 932
BspCNI CTCAG 4 cut(s) 253, 381, 402, 795
BspFNI CGCG 2 cut(s) 133, 138
BspLI GGNNCC 1 cut(s) 460
BspMAI CTGCAG 1 cut(s) 842
BspPI GGATC 2 cut(s) 44, 251
BspQI GCTCTTC 1 cut(s) 882
BspT104I TTCGAA 1 cut(s) 769
BspT107I GGYRCC 1 cut(s) 458
BspTNI GGTCTC 1 cut(s) 554
BsrBI CCGCTC 1 cut(s) 263
BsrFI RCCGGY 1 cut(s) 707
BsrI ACTGG 1 cut(s) 700
BssAI RCCGGY 1 cut(s) 707
BssECI CCNNGG 1 cut(s) 536
BssMI GATC 5 cut(s) 49, 256, 362, 378, 385
BssNI GRCGYC 2 cut(s) 459, 530
Bst2UI CCWGG 1 cut(s) 617
Bst4CI ACNGT 1 cut(s) 863
Bst6I CTCTTC 2 cut(s) 729, 882
BstACI GRCGYC 2 cut(s) 459, 530
BstBI TTCGAA 1 cut(s) 769
BstC8I GCNNGC 1 cut(s) 818
BstDEI CTNAG 6 cut(s) 240, 389, 410, 565, 803, 893
BstENI CCTNNNNNAGG 1 cut(s) 568
BstF5I GGATG 1 cut(s) 946
BstFNI CGCG 2 cut(s) 133, 138
BstH2I RGCGCY 1 cut(s) 462
BstHHI GCGC 5 cut(s) 135, 140, 416, 461, 856
BstKTI GATC 5 cut(s) 52, 259, 365, 381, 388
BstMAI GTCTC 4 cut(s) 385, 554, 893, 911
BstMBI GATC 5 cut(s) 49, 256, 362, 378, 385
BstMCI CGRYCG 2 cut(s) 88, 365
BstNI CCWGG 1 cut(s) 617
BstSCI CCNGG 2 cut(s) 535, 615
BstSFI CTRYAG 1 cut(s) 838
BstUI CGCG 2 cut(s) 133, 138
BstV1I GCAGC 2 cut(s) 824, 852
BsuRI GGCC 3 cut(s) 699, 820, 932
BtsCI GGATG 1 cut(s) 946
BtsIMutI CAGTG 2 cut(s) 248, 587
Cac8I GCNNGC 1 cut(s) 818
CfoI GCGC 5 cut(s) 135, 140, 416, 461, 856
Cfr10I RCCGGY 1 cut(s) 707
Cfr13I GGNCC 3 cut(s) 613, 698, 930
Csp6I GTAC 1 cut(s) 352
CspAI ACCGGT 1 cut(s) 707
CviAII CATG 1 cut(s) 79
CviQI GTAC 1 cut(s) 352
DdeI CTNAG 6 cut(s) 240, 389, 410, 565, 803, 893
DinI GGCGCC 1 cut(s) 460
DpnI GATC 5 cut(s) 51, 258, 364, 380, 387
DpnII GATC 5 cut(s) 49, 256, 362, 378, 385
Eam1104I CTCTTC 2 cut(s) 729, 882
EarI CTCTTC 2 cut(s) 729, 882
EciI GGCGGA 2 cut(s) 175, 283
Eco147I AGGCCT 1 cut(s) 820
Eco24I GRGCYC 1 cut(s) 658
Eco31I GGTCTC 1 cut(s) 554
Eco47I GGWCC 1 cut(s) 613
Eco88I CYCGRG 1 cut(s) 311
EcoNI CCTNNNNNAGG 1 cut(s) 568
EcoRI GAATTC 3 cut(s) 515, 599, 771
EcoRII CCWGG 1 cut(s) 615
EcoT38I GRGCYC 1 cut(s) 658
EgeI GGCGCC 1 cut(s) 460
EheI GGCGCC 1 cut(s) 460
Esp3I CGTCTC 1 cut(s) 911
FaeI CATG 1 cut(s) 82
FatI CATG 1 cut(s) 78
FauI CCCGC 3 cut(s) 119, 206, 268
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 5 cut(s) 136, 141, 144, 838, 841
FokI GGATG 1 cut(s) 953
FriOI GRGCYC 1 cut(s) 658
Fsp4HI GCNGC 5 cut(s) 136, 141, 144, 838, 841
FspBI CTAG 3 cut(s) 41, 401, 903
GlaI GCGC 5 cut(s) 134, 139, 415, 460, 855
GluI GCNGC 5 cut(s) 136, 141, 144, 838, 841
HaeII RGCGCY 1 cut(s) 462
HaeIII GGCC 3 cut(s) 699, 820, 932
HapII CCGG 3 cut(s) 503, 536, 708
HhaI GCGC 5 cut(s) 135, 140, 416, 461, 856
Hin1I GRCGYC 2 cut(s) 459, 530
Hin1II CATG 1 cut(s) 82
Hin6I GCGC 5 cut(s) 133, 138, 414, 459, 854
HinP1I GCGC 5 cut(s) 133, 138, 414, 459, 854
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HinfI GANTC 7 cut(s) 44, 149, 176, 227, 249, 620, 766
HpaII CCGG 3 cut(s) 503, 536, 708
HphI GGTGA 3 cut(s) 85, 244, 643
Hpy166II GTNNAC 2 cut(s) 180, 226
Hpy188III TCNNGA 2 cut(s) 313, 908
Hpy8I GTNNAC 2 cut(s) 180, 226
Hpy99I CGWCG 5 cut(s) 227, 326, 370, 532, 535
HpyAV CCTTC 6 cut(s) 177, 181, 199, 478, 547, 719
HpyCH4III ACNGT 1 cut(s) 863
HpyCH4IV ACGT 1 cut(s) 530
HpyCH4V TGCA 2 cut(s) 782, 840
HpyF3I CTNAG 6 cut(s) 240, 389, 410, 565, 803, 893
HpySE526I ACGT 1 cut(s) 530
Hsp92I GRCGYC 2 cut(s) 459, 530
Hsp92II CATG 1 cut(s) 82
HspAI GCGC 5 cut(s) 133, 138, 414, 459, 854
KasI GGCGCC 1 cut(s) 458
Kzo9I GATC 5 cut(s) 49, 256, 362, 378, 385
LguI GCTCTTC 1 cut(s) 882
LmnI GCTCC 1 cut(s) 813
Lsp1109I GCAGC 2 cut(s) 824, 852
MaeI CTAG 3 cut(s) 41, 401, 903
MaeII ACGT 1 cut(s) 530
MaeIII GTNAC 1 cut(s) 703
MalI GATC 5 cut(s) 51, 258, 364, 380, 387
MbiI CCGCTC 1 cut(s) 263
MboI GATC 5 cut(s) 49, 256, 362, 378, 385
MboII GAAGA 6 cut(s) 44, 442, 445, 746, 899, 1006
MhlI GDGCHC 2 cut(s) 587, 658
MluCI AATT 9 cut(s) 437, 515, 599, 606, 679, 771, 825, 925, 976
Mly113I GGCGCC 1 cut(s) 459
MlyI GAGTC 4 cut(s) 143, 185, 221, 243
MmeI TCCRAC 4 cut(s) 180, 330, 551, 574
MroXI GAANNNNTTC 1 cut(s) 437
MseI TTAA 1 cut(s) 1042
MspI CCGG 3 cut(s) 503, 536, 708
MspR9I CCNGG 2 cut(s) 537, 617
MteI GCGCNGCGC 1 cut(s) 136
MvaI CCWGG 1 cut(s) 617
MvnI CGCG 2 cut(s) 133, 138
NarI GGCGCC 1 cut(s) 459
NciI CCSGG 1 cut(s) 537
NdeII GATC 5 cut(s) 49, 256, 362, 378, 385
NlaIII CATG 1 cut(s) 82
NlaIV GGNNCC 1 cut(s) 460
NmeAIII GCCGAG 1 cut(s) 352
NmuCI GTSAC 1 cut(s) 703
NspV TTCGAA 1 cut(s) 769
PaeR7I CTCGAG 1 cut(s) 311
PceI AGGCCT 1 cut(s) 820
PciSI GCTCTTC 1 cut(s) 882
PcsI WCGNNNNNNNCGW 2 cut(s) 318, 374
PdmI GAANNNNTTC 1 cut(s) 437
PfeI GAWTC 3 cut(s) 44, 620, 766
Pfl23II CGTACG 1 cut(s) 351
PinAI ACCGGT 1 cut(s) 707
PkrI GCNGC 5 cut(s) 137, 142, 145, 839, 842
Ple19I CGATCG 1 cut(s) 365
PleI GAGTC 4 cut(s) 143, 184, 221, 243
PluTI GGCGCC 1 cut(s) 462
PpsI GAGTC 4 cut(s) 143, 184, 221, 243
Psp6I CCWGG 1 cut(s) 615
PspGI CCWGG 1 cut(s) 615
PspLI CGTACG 1 cut(s) 351
PspN4I GGNNCC 1 cut(s) 460
PspPI GGNCC 3 cut(s) 613, 698, 930
PstI CTGCAG 1 cut(s) 842
PvuI CGATCG 1 cut(s) 365
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
SalI GTCGAC 1 cut(s) 224
SapI GCTCTTC 1 cut(s) 882
SaqAI TTAA 1 cut(s) 1042
SatI GCNGC 5 cut(s) 136, 141, 144, 838, 841
Sau3AI GATC 5 cut(s) 49, 256, 362, 378, 385
Sau96I GGNCC 3 cut(s) 613, 698, 930
SchI GAGTC 4 cut(s) 143, 185, 221, 243
ScrFI CCNGG 2 cut(s) 537, 617
SduI GDGCHC 2 cut(s) 587, 658
SfcI CTRYAG 1 cut(s) 838
SfoI GGCGCC 1 cut(s) 460
Sfr274I CTCGAG 1 cut(s) 311
SfuI TTCGAA 1 cut(s) 769
SinI GGWCC 1 cut(s) 613
SlaI CTCGAG 1 cut(s) 311
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
SpeI ACTAGT 1 cut(s) 902
Sse9I AATT 9 cut(s) 437, 515, 599, 606, 679, 771, 825, 925, 976
SseBI AGGCCT 1 cut(s) 820
SspDI GGCGCC 1 cut(s) 458
SspMI CTAG 3 cut(s) 41, 401, 903
StuI AGGCCT 1 cut(s) 820
StyD4I CCNGG 2 cut(s) 535, 615
TaaI ACNGT 1 cut(s) 863
TaiI ACGT 1 cut(s) 533
TaqI TCGA 8 cut(s) 84, 117, 174, 225, 282, 312, 769, 1025
TasI AATT 9 cut(s) 437, 515, 599, 606, 679, 771, 825, 925, 976
TauI GCSGC 3 cut(s) 138, 143, 146
TfiI GAWTC 3 cut(s) 44, 620, 766
Tru1I TTAA 1 cut(s) 1042
Tru9I TTAA 1 cut(s) 1042
TscAI CASTG 2 cut(s) 248, 587
TseFI GTSAC 1 cut(s) 703
TseI GCWGC 2 cut(s) 837, 840
Tsp45I GTSAC 1 cut(s) 703
TspDTI ATGAA 4 cut(s) 24, 508, 656, 764
TspGWI ACGGA 2 cut(s) 211, 935
TspRI CASTG 2 cut(s) 248, 587
VpaK11BI GGWCC 1 cut(s) 613
XagI CCTNNNNNAGG 1 cut(s) 568
XapI RAATTY 4 cut(s) 437, 515, 599, 771
XhoI CTCGAG 1 cut(s) 311
XmiI GTMKAC 1 cut(s) 225
XmnI GAANNNNTTC 1 cut(s) 437
XspI CTAG 3 cut(s) 41, 401, 903
ZraI GACGTC 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.