Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0011397

Physical Location & Seq

Genomic Coordinates Reverse (-)

26257197 .. 26272902

Gene Structure 15706 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG254000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGCTCGACCGCCTCACCCACCGCCACCAATCCCGCCTCGACACCACCCTCACGCGCCGCGCCGCCGCCGACTCCTCCGATCCCTCCCCTTCCTTCGAGTCCACTTCCACCTTCCTCTCCCGCTTCTCCACCTCCAAGTCCTCCGTCGACTCCCAACTCGCCCAGTGCCGACTCACCGATCCCGCTCACCTCAAACCCCTCCTCGACCAAATCTCCGCCTCCATCTCCGACCTCGAGAAGCTCGTCGCCGAGAACTCCTACTTCCTCCCCTCGTACGAAGTCCGATCGTCGCTCAAAACGATCTCCGATCTCAGACAAACCCTAGAGAACCTGAGCGCCGAGTTACTGCCGAAGAAGAAATTCTCTTTCAGAAACAAAGGCGCCAAGAAAACCGAGCCAAAGGAGAAGGAGAATGAGAAAGAGCCGGAGAAAATGGAGTTCATAGTTCCGGCGTCGCCGGGGATTTGGAACAAGAAAGGGGAGACCTTAGTGAGGAAGTTTCAGTGCTCGGAAGTCGGAGAATTCACGATTTCGGACCTGGATTCCTGCGAGATTCGAATTCACAATGCAAAGAGGTGTGATTTTTATCTGAGAGTGAGGAGCAGGCCTATAATTGAGGATAGCTGCGGGGTGAGGTTTGCCCCGTACTGTTTGAGTTATAATGGGATTGAGGAAGAGCTTAGGGAGACTAGTCTTGATGAGGAGACGGAGAATTGGGCCAATGTGGATGACTTCTTGTGGTTGAGGGCAGTTCAGTCGCCGAATTGTGAGAGTACTGTCAAAGTTGGAGATGGCTGCTTGAACTTTCTGTGCCATTTTCACATTGCAGAAGTCATAATGTGGAAGCCTGCAAAGCGTCGCATTCGTTTTGCTTGTGGAAAGTTGAAAAGATCAAGGTGTGAACTTCTTAAGGACAAAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005929 GO:0006457 GO:0006996 GO:0007010 GO:0007017 GO:0007021 GO:0008150 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022607 GO:0032391 GO:0034622 GO:0035869 GO:0042995 GO:0043005 GO:0043226 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044441 GO:0044444 GO:0044463 GO:0044464 GO:0065003 GO:0071840 GO:0097458 GO:0097730 GO:0097731 GO:0097733 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TBCC TBCC_N

Protein Analysis

307

Amino Acids

35.14

Weight (kDa)

8.23

Isoelectric Point (pI)

62.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TBCC_N	PF16752	3 - 119	1.1e-30	Tubulin-specific chaperone C N-terminal domain
TBCC	PF07986	184 - 245	4.4e-18	Tubulin binding cofactor C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39920
fragaria_vesca	FvH4_1g20700 FvH4_1g20700 FvH4_1g20700
malus_domestica	MD01G1031400.v1.1 MD05G1043000.v1.1
prunus_persica	Prupe.6G188100_v2.0.a1
pyrus_communis	pycom01g05900
rosa_chinensis	RchiOBHm_Chr2g0113151
rosa_laevigata	RLG00000018047
rosa_multiflora	Rmu_co8118374.1_g000001 Rmu_co8398113.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129570 Rroxscaffold_2G00129740
rosa_rugosa	Rorug02G0185800
rosa_samantha	Rh2AG240100 Rh2BG254000 Rh2CG244100 Rh2DG248000
rosa_wichuraiana	Rw2G018790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	660
AccB1I	GGYRCC	1 cut(s)	380
AccBSI	CCGCTC	1 cut(s)	185
AccI	GTMKAC	1 cut(s)	147
AccII	CGCG	2 cut(s)	55, 60
AclWI	GGATC	2 cut(s)	74, 173
AcsI	RAATTY	3 cut(s)	359, 521, 558
AcyI	GRCGYC	2 cut(s)	381, 452
AfaI	GTAC	3 cut(s)	275, 647, 775
AfiI	CCNNNNNNNGG	1 cut(s)	492
AflII	CTTAAG	1 cut(s)	908
AgsI	TTSAA	2 cut(s)	802, 886
AhlI	ACTAGT	1 cut(s)	689
AjnI	CCWGG	1 cut(s)	537
AluBI	AGCT	3 cut(s)	241, 624, 679
AluI	AGCT	3 cut(s)	241, 624, 679
Alw21I	GWGCWC	1 cut(s)	509
Alw26I	GTCTC	3 cut(s)	476, 680, 698
AlwI	GGATC	2 cut(s)	74, 173
Ama87I	CYCGRG	1 cut(s)	233
AoxI	GGCC	2 cut(s)	605, 717
ApeKI	GCWGC	2 cut(s)	624, 795
ApoI	RAATTY	3 cut(s)	359, 521, 558
Asp700I	GAANNNNTTC	1 cut(s)	359
AspLEI	GCGC	4 cut(s)	57, 62, 338, 383
AspS9I	GGNCC	2 cut(s)	535, 717
AsuC2I	CCSGG	1 cut(s)	459
AsuHPI	GGTGA	4 cut(s)	7, 166, 179, 643
AsuII	TTCGAA	1 cut(s)	556
AvaI	CYCGRG	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	535
BanI	GGYRCC	1 cut(s)	380
Bbv12I	GWGCWC	1 cut(s)	509
BbvI	GCAGC	2 cut(s)	611, 782
BccI	CCATC	2 cut(s)	230, 785
BcgI	CGANNNNNNTGC	2 cut(s)	738, 772
BciT130I	CCWGG	1 cut(s)	539
BcnI	CCSGG	1 cut(s)	459
BcoDI	GTCTC	3 cut(s)	476, 680, 698
BcuI	ACTAGT	1 cut(s)	689
BfaI	CTAG	2 cut(s)	323, 690
BfoI	RGCGCY	2 cut(s)	339, 384
BfrI	CTTAAG	1 cut(s)	908
BisI	GCNGC	5 cut(s)	58, 63, 66, 625, 796
BlsI	GCNGC	5 cut(s)	59, 64, 67, 626, 797
BmcAI	AGTACT	1 cut(s)	775
Bme1390I	CCNGG	2 cut(s)	459, 539
Bme18I	GGWCC	1 cut(s)	535
BmeT110I	CYCGRG	1 cut(s)	233
BmgT120I	GGNCC	2 cut(s)	535, 717
BmiI	GGNNCC	1 cut(s)	382
BmrFI	CCNGG	2 cut(s)	459, 539
BmrI	ACTGGG	1 cut(s)	157
BmuI	ACTGGG	1 cut(s)	157
Bpu10I	CCTNAGC	2 cut(s)	332, 680
Bpu14I	TTCGAA	1 cut(s)	556
BpuMI	CCSGG	1 cut(s)	459
BsaBI	GATNNNNATC	1 cut(s)	585
BsaHI	GRCGYC	2 cut(s)	381, 452
BsaI	GGTCTC	1 cut(s)	476
BsaJI	CCNNGG	1 cut(s)	458
BsaXI	ACNNNNNCTCC	2 cut(s)	197, 227
Bsc4I	CCNNNNNNNGG	1 cut(s)	492
Bse1I	ACTGG	1 cut(s)	163
Bse3DI	GCAATG	1 cut(s)	822
Bse8I	GATNNNNATC	1 cut(s)	585
BseBI	CCWGG	1 cut(s)	539
BseDI	CCNNGG	1 cut(s)	458
BseGI	GGATG	1 cut(s)	733
BseJI	GATNNNNATC	1 cut(s)	585
BseLI	CCNNNNNNNGG	1 cut(s)	492
BseMI	GCAATG	1 cut(s)	822
BseMII	CTCAG	3 cut(s)	323, 325, 581
BseNI	ACTGG	1 cut(s)	163
BseRI	GAGGAG	4 cut(s)	64, 191, 613, 716
BseXI	GCAGC	2 cut(s)	611, 782
Bsh1236I	CGCG	2 cut(s)	55, 60
Bsh1285I	CGRYCG	2 cut(s)	10, 287
BshFI	GGCC	2 cut(s)	607, 719
BshNI	GGYRCC	1 cut(s)	380
BsiEI	CGRYCG	2 cut(s)	10, 287
BsiHKAI	GWGCWC	1 cut(s)	509
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	3 cut(s)	425, 449, 458
BsiWI	CGTACG	1 cut(s)	273
BslI	CCNNNNNNNGG	1 cut(s)	492
BsmAI	GTCTC	3 cut(s)	476, 680, 698
BsmBI	CGTCTC	1 cut(s)	698
BsmI	GAATGC	1 cut(s)	861
BsnI	GGCC	2 cut(s)	607, 719
Bso31I	GGTCTC	1 cut(s)	476
BsoBI	CYCGRG	1 cut(s)	233
Bsp119I	TTCGAA	1 cut(s)	556
Bsp1286I	GDGCHC	1 cut(s)	509
Bsp143I	GATC	6 cut(s)	79, 178, 284, 300, 307, 890
BspANI	GGCC	2 cut(s)	607, 719
BspCNI	CTCAG	3 cut(s)	324, 324, 582
BspFNI	CGCG	2 cut(s)	55, 60
BspLI	GGNNCC	1 cut(s)	382
BspPI	GGATC	2 cut(s)	74, 173
BspQI	GCTCTTC	1 cut(s)	669
BspT104I	TTCGAA	1 cut(s)	556
BspT107I	GGYRCC	1 cut(s)	380
BspTI	CTTAAG	1 cut(s)	908
BspTNI	GGTCTC	1 cut(s)	476
BsrBI	CCGCTC	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	822
BsrI	ACTGG	1 cut(s)	163
BssECI	CCNNGG	1 cut(s)	458
BssMI	GATC	6 cut(s)	79, 178, 284, 300, 307, 890
BssNI	GRCGYC	2 cut(s)	381, 452
Bst2UI	CCWGG	1 cut(s)	539
Bst4CI	ACNGT	2 cut(s)	650, 778
Bst6I	CTCTTC	1 cut(s)	669
BstACI	GRCGYC	2 cut(s)	381, 452
BstAFI	CTTAAG	1 cut(s)	908
BstBI	TTCGAA	1 cut(s)	556
BstC8I	GCNNGC	2 cut(s)	605, 849
BstDEI	CTNAG	5 cut(s)	311, 332, 487, 590, 680
BstENI	CCTNNNNNAGG	1 cut(s)	490
BstF5I	GGATG	1 cut(s)	733
BstFNI	CGCG	2 cut(s)	55, 60
BstH2I	RGCGCY	2 cut(s)	339, 384
BstHHI	GCGC	4 cut(s)	57, 62, 338, 383
BstKTI	GATC	6 cut(s)	82, 181, 287, 303, 310, 893
BstMAI	GTCTC	3 cut(s)	476, 680, 698
BstMBI	GATC	6 cut(s)	79, 178, 284, 300, 307, 890
BstMCI	CGRYCG	2 cut(s)	10, 287
BstMWI	GCNNNNNNNGC	1 cut(s)	853
BstNI	CCWGG	1 cut(s)	539
BstSCI	CCNGG	2 cut(s)	457, 537
BstUI	CGCG	2 cut(s)	55, 60
BstV1I	GCAGC	2 cut(s)	611, 782
BsuRI	GGCC	2 cut(s)	607, 719
BtsCI	GGATG	1 cut(s)	733
BtsIMutI	CAGTG	2 cut(s)	170, 509
Cac8I	GCNNGC	2 cut(s)	605, 849
CfoI	GCGC	4 cut(s)	57, 62, 338, 383
Cfr13I	GGNCC	2 cut(s)	535, 717
CseI	GACGC	2 cut(s)	441, 845
Csp6I	GTAC	3 cut(s)	274, 646, 774
CviJI	RGCY	9 cut(s)	241, 397, 424, 607, 624, 679, 719, 795, 847
CviKI_1	RGCY	9 cut(s)	241, 397, 424, 607, 624, 679, 719, 795, 847
CviQI	GTAC	3 cut(s)	274, 646, 774
DdeI	CTNAG	5 cut(s)	311, 332, 487, 590, 680
DinI	GGCGCC	1 cut(s)	382
DpnI	GATC	6 cut(s)	81, 180, 286, 302, 309, 892
DpnII	GATC	6 cut(s)	79, 178, 284, 300, 307, 890
Eam1104I	CTCTTC	1 cut(s)	669
EarI	CTCTTC	1 cut(s)	669
EciI	GGCGGA	1 cut(s)	205
Eco147I	AGGCCT	1 cut(s)	607
Eco31I	GGTCTC	1 cut(s)	476
Eco47I	GGWCC	1 cut(s)	535
Eco88I	CYCGRG	1 cut(s)	233
EcoNI	CCTNNNNNAGG	1 cut(s)	490
EcoRI	GAATTC	2 cut(s)	521, 558
EcoRII	CCWGG	1 cut(s)	537
EgeI	GGCGCC	1 cut(s)	382
EheI	GGCGCC	1 cut(s)	382
Esp3I	CGTCTC	1 cut(s)	698
FaiI	YATR	4 cut(s)	443, 611, 660, 836
FauI	CCCGC	4 cut(s)	41, 128, 190, 620
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	5 cut(s)	58, 63, 66, 625, 796
FokI	GGATG	1 cut(s)	740
Fsp4HI	GCNGC	5 cut(s)	58, 63, 66, 625, 796
FspBI	CTAG	2 cut(s)	323, 690
GlaI	GCGC	4 cut(s)	56, 61, 337, 382
GluI	GCNGC	5 cut(s)	58, 63, 66, 625, 796
HaeII	RGCGCY	2 cut(s)	339, 384
HaeIII	GGCC	2 cut(s)	607, 719
HapII	CCGG	3 cut(s)	425, 449, 458
HgaI	GACGC	2 cut(s)	441, 845
HhaI	GCGC	4 cut(s)	57, 62, 338, 383
Hin1I	GRCGYC	2 cut(s)	381, 452
Hin6I	GCGC	4 cut(s)	55, 60, 336, 381
HinP1I	GCGC	4 cut(s)	55, 60, 336, 381
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	6 cut(s)	71, 98, 149, 171, 542, 553
HpaII	CCGG	3 cut(s)	425, 449, 458
HphI	GGTGA	4 cut(s)	7, 166, 179, 643
Hpy166II	GTNNAC	3 cut(s)	102, 148, 902
Hpy188III	TCNNGA	3 cut(s)	235, 526, 695
Hpy8I	GTNNAC	3 cut(s)	102, 148, 902
Hpy99I	CGWCG	5 cut(s)	149, 248, 292, 457, 861
HpyAV	CCTTC	4 cut(s)	99, 103, 121, 400
HpyCH4III	ACNGT	2 cut(s)	650, 778
HpyCH4V	TGCA	3 cut(s)	569, 827, 851
HpyF10VI	GCNNNNNNNGC	1 cut(s)	853
HpyF3I	CTNAG	5 cut(s)	311, 332, 487, 590, 680
Hsp92I	GRCGYC	2 cut(s)	381, 452
HspAI	GCGC	4 cut(s)	55, 60, 336, 381
KasI	GGCGCC	1 cut(s)	380
Kzo9I	GATC	6 cut(s)	79, 178, 284, 300, 307, 890
LguI	GCTCTTC	1 cut(s)	669
LmnI	GCTCC	1 cut(s)	600
Lsp1109I	GCAGC	2 cut(s)	611, 782
MaeI	CTAG	2 cut(s)	323, 690
MaeIII	GTNAC	1 cut(s)	342
MalI	GATC	6 cut(s)	81, 180, 286, 302, 309, 892
MbiI	CCGCTC	1 cut(s)	185
MboI	GATC	6 cut(s)	79, 178, 284, 300, 307, 890
MboII	GAAGA	3 cut(s)	364, 367, 686
MhlI	GDGCHC	1 cut(s)	509
MluCI	AATT	6 cut(s)	359, 521, 558, 612, 712, 763
Mly113I	GGCGCC	1 cut(s)	381
MlyI	GAGTC	4 cut(s)	65, 107, 143, 165
MmeI	TCCRAC	3 cut(s)	252, 496, 766
MroXI	GAANNNNTTC	1 cut(s)	359
MseI	TTAA	1 cut(s)	909
MspCI	CTTAAG	1 cut(s)	908
MspI	CCGG	3 cut(s)	425, 449, 458
MspR9I	CCNGG	2 cut(s)	459, 539
MteI	GCGCNGCGC	1 cut(s)	58
Mva1269I	GAATGC	1 cut(s)	861
MvaI	CCWGG	1 cut(s)	539
MvnI	CGCG	2 cut(s)	55, 60
MwoI	GCNNNNNNNGC	1 cut(s)	853
NarI	GGCGCC	1 cut(s)	381
NciI	CCSGG	1 cut(s)	459
NdeII	GATC	6 cut(s)	79, 178, 284, 300, 307, 890
NlaIV	GGNNCC	1 cut(s)	382
NmeAIII	GCCGAG	2 cut(s)	274, 364
NspV	TTCGAA	1 cut(s)	556
PaeR7I	CTCGAG	1 cut(s)	233
PceI	AGGCCT	1 cut(s)	607
PciSI	GCTCTTC	1 cut(s)	669
PcsI	WCGNNNNNNNCGW	2 cut(s)	240, 296
PctI	GAATGC	1 cut(s)	861
PdmI	GAANNNNTTC	1 cut(s)	359
PfeI	GAWTC	2 cut(s)	542, 553
Pfl23II	CGTACG	1 cut(s)	273
PkrI	GCNGC	5 cut(s)	59, 64, 67, 626, 797
Ple19I	CGATCG	1 cut(s)	287
PleI	GAGTC	4 cut(s)	65, 106, 143, 165
PluTI	GGCGCC	1 cut(s)	384
PpsI	GAGTC	4 cut(s)	65, 106, 143, 165
PsiI	TTATAA	1 cut(s)	660
Psp6I	CCWGG	1 cut(s)	537
PspGI	CCWGG	1 cut(s)	537
PspLI	CGTACG	1 cut(s)	273
PspN4I	GGNNCC	1 cut(s)	382
PspPI	GGNCC	2 cut(s)	535, 717
PvuI	CGATCG	1 cut(s)	287
RsaI	GTAC	3 cut(s)	275, 647, 775
RsaNI	GTAC	3 cut(s)	274, 646, 774
SalI	GTCGAC	1 cut(s)	146
SapI	GCTCTTC	1 cut(s)	669
SaqAI	TTAA	1 cut(s)	909
SatI	GCNGC	5 cut(s)	58, 63, 66, 625, 796
Sau3AI	GATC	6 cut(s)	79, 178, 284, 300, 307, 890
Sau96I	GGNCC	2 cut(s)	535, 717
ScaI	AGTACT	1 cut(s)	775
SchI	GAGTC	4 cut(s)	65, 107, 143, 165
ScrFI	CCNGG	2 cut(s)	459, 539
SduI	GDGCHC	1 cut(s)	509
SfoI	GGCGCC	1 cut(s)	382
Sfr274I	CTCGAG	1 cut(s)	233
SfuI	TTCGAA	1 cut(s)	556
SinI	GGWCC	1 cut(s)	535
SlaI	CTCGAG	1 cut(s)	233
SmlI	CTYRAG	2 cut(s)	233, 908
SmoI	CTYRAG	2 cut(s)	233, 908
SpeI	ACTAGT	1 cut(s)	689
Sse9I	AATT	6 cut(s)	359, 521, 558, 612, 712, 763
SseBI	AGGCCT	1 cut(s)	607
SspDI	GGCGCC	1 cut(s)	380
SspMI	CTAG	2 cut(s)	323, 690
StuI	AGGCCT	1 cut(s)	607
StyD4I	CCNGG	2 cut(s)	457, 537
TaaI	ACNGT	2 cut(s)	650, 778
TaqI	TCGA	7 cut(s)	6, 39, 96, 147, 204, 234, 556
TasI	AATT	6 cut(s)	359, 521, 558, 612, 712, 763
TatI	WGTACW	1 cut(s)	773
TauI	GCSGC	3 cut(s)	60, 65, 68
TfiI	GAWTC	2 cut(s)	542, 553
Tru1I	TTAA	1 cut(s)	909
Tru9I	TTAA	1 cut(s)	909
TscAI	CASTG	2 cut(s)	170, 509
TseI	GCWGC	2 cut(s)	624, 795
TspDTI	ATGAA	1 cut(s)	430
TspGWI	ACGGA	2 cut(s)	133, 722
TspRI	CASTG	2 cut(s)	170, 509
Vha464I	CTTAAG	1 cut(s)	908
VpaK11BI	GGWCC	1 cut(s)	535
XagI	CCTNNNNNAGG	1 cut(s)	490
XapI	RAATTY	3 cut(s)	359, 521, 558
XhoI	CTCGAG	1 cut(s)	233
XmiI	GTMKAC	1 cut(s)	147
XmnI	GAANNNNTTC	1 cut(s)	359
XspI	CTAG	2 cut(s)	323, 690
ZrmI	AGTACT	1 cut(s)	775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.