Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8118374.1

Orthogroup ID

OG0011397

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 617

Gene Structure 617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8118374.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 617 bp

tcgctgccacccatggaaaatgaaccaccaaaccctacccaagaagaagccctagattccgacccagctctccaaaagaagcaccaatccatgctcgaccgcctcacccaccgccaccaatcccgcctcgacaccaccctcacgcgccgcgccgccgccgactcctccgacccctccccttccttcgagtccacctccgccttcctctcccgcttctccacctccaagtcctccgtcgactcccaactcgcccagtgccgactcaccgatcccgctcacctcaaaccccacctcgaccaaatctccgcctccatctccgacctcgagaagctcgtcgccgagaactcctacttcctcccctcatacgaagtccgatcgtcgctcaaaacgatctccgatctgagacaaaccctagagaacctgagcgccgagttactgccgaagaagaaattctctttcagaaacaaaggcgccaagaaaaccgagccaaaggagaaggagaatgagaaagagccggagaaaatggagttcatagttccggcgtcgccggggatttggaacaagaaaggggagaccttagtgaggaagtttcagtgctcggaagtcggagaattcac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005929 GO:0006457 GO:0006996 GO:0007010 GO:0007017 GO:0007021 GO:0008150 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022607 GO:0032391 GO:0034622 GO:0035869 GO:0042995 GO:0043005 GO:0043226 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044441 GO:0044444 GO:0044463 GO:0044464 GO:0065003 GO:0071840 GO:0097458 GO:0097730 GO:0097731 GO:0097733 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TBCC TBCC_N

Protein Analysis

206

Amino Acids

23.2

Weight (kDa)

6.53

Isoelectric Point (pI)

52.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39920
fragaria_vesca	FvH4_1g20700 FvH4_1g20700 FvH4_1g20700
malus_domestica	MD01G1031400.v1.1 MD05G1043000.v1.1
prunus_persica	Prupe.6G188100_v2.0.a1
pyrus_communis	pycom01g05900
rosa_chinensis	RchiOBHm_Chr2g0113151
rosa_laevigata	RLG00000018047
rosa_multiflora	Rmu_co8118374.1_g000001 Rmu_co8398113.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129570 Rroxscaffold_2G00129740
rosa_rugosa	Rorug02G0185800
rosa_samantha	Rh2AG240100 Rh2BG254000 Rh2CG244100 Rh2DG248000
rosa_wichuraiana	Rw2G018790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	470
AccBSI	CCGCTC	1 cut(s)	275
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	2 cut(s)	145, 150
AclWI	GGATC	1 cut(s)	263
AcsI	RAATTY	2 cut(s)	449, 611
AcyI	GRCGYC	2 cut(s)	471, 542
AfiI	CCNNNNNNNGG	1 cut(s)	582
AluBI	AGCT	2 cut(s)	68, 331
AluI	AGCT	2 cut(s)	68, 331
Alw21I	GWGCWC	1 cut(s)	599
Alw26I	GTCTC	2 cut(s)	397, 566
AlwI	GGATC	1 cut(s)	263
Ama87I	CYCGRG	1 cut(s)	323
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	2 cut(s)	449, 611
Asp700I	GAANNNNTTC	1 cut(s)	449
AspLEI	GCGC	4 cut(s)	147, 152, 428, 473
AsuC2I	CCSGG	1 cut(s)	549
AsuHPI	GGTGA	3 cut(s)	97, 256, 269
AvaI	CYCGRG	1 cut(s)	323
BanI	GGYRCC	1 cut(s)	470
Bbv12I	GWGCWC	1 cut(s)	599
BccI	CCATC	1 cut(s)	320
BcnI	CCSGG	1 cut(s)	549
BcoDI	GTCTC	2 cut(s)	397, 566
BfaI	CTAG	2 cut(s)	53, 413
BfoI	RGCGCY	2 cut(s)	429, 474
BisI	GCNGC	4 cut(s)	5, 148, 153, 156
BlsI	GCNGC	4 cut(s)	6, 149, 154, 157
Bme1390I	CCNGG	1 cut(s)	549
BmeT110I	CYCGRG	1 cut(s)	323
BmiI	GGNNCC	1 cut(s)	472
BmrFI	CCNGG	1 cut(s)	549
BmrI	ACTGGG	1 cut(s)	247
BmuI	ACTGGG	1 cut(s)	247
BplI	GAGNNNNNCTC	2 cut(s)	179, 211
Bpu10I	CCTNAGC	1 cut(s)	422
BpuMI	CCSGG	1 cut(s)	549
BsaHI	GRCGYC	2 cut(s)	471, 542
BsaI	GGTCTC	1 cut(s)	566
BsaJI	CCNNGG	2 cut(s)	12, 548
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bsc4I	CCNNNNNNNGG	1 cut(s)	582
Bse1I	ACTGG	1 cut(s)	253
BseDI	CCNNGG	2 cut(s)	12, 548
BseLI	CCNNNNNNNGG	1 cut(s)	582
BseMII	CTCAG	2 cut(s)	392, 413
BseNI	ACTGG	1 cut(s)	253
BseRI	GAGGAG	1 cut(s)	154
BseYI	CCCAGC	1 cut(s)	64
Bsh1236I	CGCG	2 cut(s)	145, 150
Bsh1285I	CGRYCG	2 cut(s)	100, 377
BshNI	GGYRCC	1 cut(s)	470
BsiEI	CGRYCG	2 cut(s)	100, 377
BsiHKAI	GWGCWC	1 cut(s)	599
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	3 cut(s)	515, 539, 548
BslI	CCNNNNNNNGG	1 cut(s)	582
BsmAI	GTCTC	2 cut(s)	397, 566
Bso31I	GGTCTC	1 cut(s)	566
BsoBI	CYCGRG	1 cut(s)	323
Bsp1286I	GDGCHC	1 cut(s)	599
Bsp143I	GATC	4 cut(s)	268, 374, 390, 397
Bsp19I	CCATGG	1 cut(s)	12
BspCNI	CTCAG	2 cut(s)	393, 414
BspFNI	CGCG	2 cut(s)	145, 150
BspLI	GGNNCC	1 cut(s)	472
BspPI	GGATC	1 cut(s)	263
BspT107I	GGYRCC	1 cut(s)	470
BspTNI	GGTCTC	1 cut(s)	566
BsrBI	CCGCTC	1 cut(s)	275
BsrI	ACTGG	1 cut(s)	253
BssECI	CCNNGG	2 cut(s)	12, 548
BssMI	GATC	4 cut(s)	268, 374, 390, 397
BssNI	GRCGYC	2 cut(s)	471, 542
BssT1I	CCWWGG	1 cut(s)	12
BstACI	GRCGYC	2 cut(s)	471, 542
BstDEI	CTNAG	3 cut(s)	401, 422, 577
BstDSI	CCRYGG	1 cut(s)	12
BstENI	CCTNNNNNAGG	1 cut(s)	580
BstFNI	CGCG	2 cut(s)	145, 150
BstH2I	RGCGCY	2 cut(s)	429, 474
BstHHI	GCGC	4 cut(s)	147, 152, 428, 473
BstKTI	GATC	4 cut(s)	271, 377, 393, 400
BstMAI	GTCTC	2 cut(s)	397, 566
BstMBI	GATC	4 cut(s)	268, 374, 390, 397
BstMCI	CGRYCG	2 cut(s)	100, 377
BstSCI	CCNGG	1 cut(s)	547
BstUI	CGCG	2 cut(s)	145, 150
BtgI	CCRYGG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	260, 599
CfoI	GCGC	4 cut(s)	147, 152, 428, 473
CseI	GACGC	1 cut(s)	531
CviAII	CATG	2 cut(s)	13, 91
CviJI	RGCY	5 cut(s)	50, 68, 331, 487, 514
CviKI_1	RGCY	5 cut(s)	50, 68, 331, 487, 514
DdeI	CTNAG	3 cut(s)	401, 422, 577
DinI	GGCGCC	1 cut(s)	472
DpnI	GATC	4 cut(s)	270, 376, 392, 399
DpnII	GATC	4 cut(s)	268, 374, 390, 397
EciI	GGCGGA	2 cut(s)	187, 295
Eco130I	CCWWGG	1 cut(s)	12
Eco31I	GGTCTC	1 cut(s)	566
Eco88I	CYCGRG	1 cut(s)	323
EcoNI	CCTNNNNNAGG	1 cut(s)	580
EcoRI	GAATTC	1 cut(s)	611
EcoT14I	CCWWGG	1 cut(s)	12
EgeI	GGCGCC	1 cut(s)	472
EheI	GGCGCC	1 cut(s)	472
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	2 cut(s)	16, 94
FaiI	YATR	4 cut(s)	14, 92, 364, 533
FatI	CATG	2 cut(s)	12, 90
FauI	CCCGC	3 cut(s)	131, 218, 280
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	4 cut(s)	5, 148, 153, 156
Fsp4HI	GCNGC	4 cut(s)	5, 148, 153, 156
FspBI	CTAG	2 cut(s)	53, 413
GlaI	GCGC	4 cut(s)	146, 151, 427, 472
GluI	GCNGC	4 cut(s)	5, 148, 153, 156
GsaI	CCCAGC	1 cut(s)	68
HaeII	RGCGCY	2 cut(s)	429, 474
HapII	CCGG	3 cut(s)	515, 539, 548
HgaI	GACGC	1 cut(s)	531
HhaI	GCGC	4 cut(s)	147, 152, 428, 473
Hin1I	GRCGYC	2 cut(s)	471, 542
Hin1II	CATG	2 cut(s)	16, 94
Hin6I	GCGC	4 cut(s)	145, 150, 426, 471
HinP1I	GCGC	4 cut(s)	145, 150, 426, 471
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HinfI	GANTC	5 cut(s)	56, 161, 188, 239, 261
HpaII	CCGG	3 cut(s)	515, 539, 548
HphI	GGTGA	3 cut(s)	97, 256, 269
Hpy166II	GTNNAC	2 cut(s)	192, 238
Hpy188I	TCNGA	9 cut(s)	61, 169, 319, 374, 397, 402, 461, 601, 608
Hpy188III	TCNNGA	1 cut(s)	325
Hpy8I	GTNNAC	2 cut(s)	192, 238
Hpy99I	CGWCG	4 cut(s)	239, 338, 382, 547
HpyAV	CCTTC	4 cut(s)	189, 193, 211, 490
HpyF3I	CTNAG	3 cut(s)	401, 422, 577
Hsp92I	GRCGYC	2 cut(s)	471, 542
Hsp92II	CATG	2 cut(s)	16, 94
HspAI	GCGC	4 cut(s)	145, 150, 426, 471
KasI	GGCGCC	1 cut(s)	470
Kzo9I	GATC	4 cut(s)	268, 374, 390, 397
LpnPI	CCDG	6 cut(s)	78, 266, 434, 528, 552, 561
MaeI	CTAG	2 cut(s)	53, 413
MaeIII	GTNAC	1 cut(s)	432
MalI	GATC	4 cut(s)	270, 376, 392, 399
MbiI	CCGCTC	1 cut(s)	275
MboI	GATC	4 cut(s)	268, 374, 390, 397
MboII	GAAGA	3 cut(s)	56, 454, 457
MhlI	GDGCHC	1 cut(s)	599
MluCI	AATT	2 cut(s)	449, 611
Mly113I	GGCGCC	1 cut(s)	471
MlyI	GAGTC	4 cut(s)	155, 197, 233, 255
MmeI	TCCRAC	4 cut(s)	84, 192, 342, 586
MroXI	GAANNNNTTC	1 cut(s)	449
MspI	CCGG	3 cut(s)	515, 539, 548
MspR9I	CCNGG	1 cut(s)	549
MteI	GCGCNGCGC	1 cut(s)	148
MvnI	CGCG	2 cut(s)	145, 150
NarI	GGCGCC	1 cut(s)	471
NciI	CCSGG	1 cut(s)	549
NcoI	CCATGG	1 cut(s)	12
NdeII	GATC	4 cut(s)	268, 374, 390, 397
NlaIII	CATG	2 cut(s)	16, 94
NlaIV	GGNNCC	1 cut(s)	472
NmeAIII	GCCGAG	2 cut(s)	364, 454
PaeR7I	CTCGAG	1 cut(s)	323
PcsI	WCGNNNNNNNCGW	2 cut(s)	330, 386
PdmI	GAANNNNTTC	1 cut(s)	449
PfeI	GAWTC	1 cut(s)	56
PkrI	GCNGC	4 cut(s)	6, 149, 154, 157
Ple19I	CGATCG	1 cut(s)	377
PleI	GAGTC	4 cut(s)	155, 196, 233, 255
PluTI	GGCGCC	1 cut(s)	474
PpsI	GAGTC	4 cut(s)	155, 196, 233, 255
PspFI	CCCAGC	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	472
PvuI	CGATCG	1 cut(s)	377
SalI	GTCGAC	1 cut(s)	236
SatI	GCNGC	4 cut(s)	5, 148, 153, 156
Sau3AI	GATC	4 cut(s)	268, 374, 390, 397
SchI	GAGTC	4 cut(s)	155, 197, 233, 255
ScrFI	CCNGG	1 cut(s)	549
SduI	GDGCHC	1 cut(s)	599
SetI	ASST	9 cut(s)	70, 197, 224, 282, 294, 324, 333, 423, 578
SfoI	GGCGCC	1 cut(s)	472
Sfr274I	CTCGAG	1 cut(s)	323
SlaI	CTCGAG	1 cut(s)	323
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	2 cut(s)	449, 611
SspDI	GGCGCC	1 cut(s)	470
SspMI	CTAG	2 cut(s)	53, 413
StyD4I	CCNGG	1 cut(s)	547
StyI	CCWWGG	1 cut(s)	12
TaqI	TCGA	6 cut(s)	96, 129, 186, 237, 294, 324
TasI	AATT	2 cut(s)	449, 611
TauI	GCSGC	3 cut(s)	150, 155, 158
TfiI	GAWTC	1 cut(s)	56
TscAI	CASTG	2 cut(s)	260, 599
TseI	GCWGC	1 cut(s)	4
TspDTI	ATGAA	2 cut(s)	36, 520
TspGWI	ACGGA	1 cut(s)	223
TspRI	CASTG	2 cut(s)	260, 599
XagI	CCTNNNNNAGG	1 cut(s)	580
XapI	RAATTY	2 cut(s)	449, 611
XhoI	CTCGAG	1 cut(s)	323
XmiI	GTMKAC	1 cut(s)	237
XmnI	GAANNNNTTC	1 cut(s)	449
XspI	CTAG	2 cut(s)	53, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.