MD01G1031400.v1.1

Tubulin-folding cofactor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0011397
Physical Location & Seq
Forward (+)
11116053 .. 11116448
396 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1031400.v1.1.491

Sequence Viewer

Length: 396 bp
ATGGGCTCCGTGAGAGCACTTTTTGTTCACAGATTAAGGAATTGCAGGGTTTATACTGGCCGTGTGATAGGTTCAGTTTCGGTTGATGGTGTTGAAAGGTGTGTTTTTGTGATGGCCTCGCATCAAATTCGGATTCACAATGCAAAAACGAGTGATTTTTATCTGAGGGTGAAGAGCTGGCCAATAATTAAGGATAGTTGTGGGGTGAGGTTTGCGCCGTATTATTTGACCTATAAAGGAATTGAGAAAGAGCTTAGGGAGGCCAGTCTTGACGAAGAGACAGAGAAATGGAGCAACGTGGATGATTTCCTATGGTTGCGGGCAATTCAGTCACCCAATTGGTTTGTTTTGCCGGAGAATGAGAGCCTTGGTTTGATTGATATTTCAAAGTCCTAG

Protein Analysis

132

Amino Acids

15.16

Weight (kDa)

8.48

Isoelectric Point (pI)

41.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TBCC PF07986 3 - 103 9.3e-31 Tubulin binding cofactor C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011397)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G39920
fragaria_vesca FvH4_1g20700 FvH4_1g20700 FvH4_1g20700
malus_domestica MD01G1031400.v1.1 MD05G1043000.v1.1
prunus_persica Prupe.6G188100_v2.0.a1
pyrus_communis pycom01g05900
rosa_chinensis RchiOBHm_Chr2g0113151
rosa_laevigata RLG00000018047
rosa_multiflora Rmu_co8118374.1_g000001 Rmu_co8398113.1_g000001
rosa_roxburghii Rroxscaffold_2G00129570 Rroxscaffold_2G00129740
rosa_rugosa Rorug02G0185800
rosa_samantha Rh2AG240100 Rh2BG254000 Rh2CG244100 Rh2DG248000
rosa_wichuraiana Rw2G018790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 319
AcoI YGGCCR 2 cut(s) 58, 179
AcsI RAATTY 1 cut(s) 126
AgsI TTSAA 2 cut(s) 95, 387
AluBI AGCT 2 cut(s) 177, 253
AluI AGCT 2 cut(s) 177, 253
Alw21I GWGCWC 1 cut(s) 19
Alw26I GTCTC 1 cut(s) 272
AoxI GGCC 4 cut(s) 58, 114, 179, 261
ApoI RAATTY 1 cut(s) 126
AspLEI GCGC 1 cut(s) 217
AsuHPI GGTGA 3 cut(s) 181, 217, 324
BalI TGGCCA 1 cut(s) 181
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 19
BccI CCATC 2 cut(s) 80, 106
BceAI ACGGC 2 cut(s) 45, 202
BcgI CGANNNNNNTGC 2 cut(s) 110, 144
BcoDI GTCTC 1 cut(s) 272
BfaI CTAG 1 cut(s) 394
BmiI GGNNCC 1 cut(s) 7
BmsI GCATC 1 cut(s) 130
Bpu10I CCTNAGC 1 cut(s) 254
BsaBI GATNNNNATC 1 cut(s) 159
BsaJI CCNNGG 1 cut(s) 367
Bse1I ACTGG 2 cut(s) 61, 264
Bse8I GATNNNNATC 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 367
BseGI GGATG 1 cut(s) 307
BseJI GATNNNNATC 1 cut(s) 159
BseMII CTCAG 1 cut(s) 155
BseNI ACTGG 2 cut(s) 61, 264
BshFI GGCC 4 cut(s) 60, 116, 181, 263
BsiHKAI GWGCWC 1 cut(s) 19
BsiSI CCGG 1 cut(s) 353
BsmAI GTCTC 1 cut(s) 272
BsnI GGCC 4 cut(s) 60, 116, 181, 263
Bsp1286I GDGCHC 2 cut(s) 8, 19
BspACI CCGC 1 cut(s) 319
BspANI GGCC 4 cut(s) 60, 116, 181, 263
BspCNI CTCAG 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 7
BspQI GCTCTTC 1 cut(s) 167
BsrI ACTGG 2 cut(s) 61, 264
BssECI CCNNGG 1 cut(s) 367
BssT1I CCWWGG 1 cut(s) 367
Bst6I CTCTTC 2 cut(s) 167, 270
BstC8I GCNNGC 2 cut(s) 179, 321
BstDEI CTNAG 2 cut(s) 164, 254
BstF5I GGATG 1 cut(s) 307
BstHHI GCGC 1 cut(s) 217
BstMAI GTCTC 1 cut(s) 272
BsuRI GGCC 4 cut(s) 60, 116, 181, 263
BtsCI GGATG 1 cut(s) 307
Cac8I GCNNGC 2 cut(s) 179, 321
CfoI GCGC 1 cut(s) 217
CviJI RGCY 8 cut(s) 6, 60, 116, 177, 181, 253, 263, 366
CviKI_1 RGCY 8 cut(s) 6, 60, 116, 177, 181, 253, 263, 366
DdeI CTNAG 2 cut(s) 164, 254
EaeI YGGCCR 2 cut(s) 58, 179
Eam1104I CTCTTC 2 cut(s) 167, 270
EarI CTCTTC 2 cut(s) 167, 270
Eco130I CCWWGG 1 cut(s) 367
Eco24I GRGCYC 1 cut(s) 8
EcoT14I CCWWGG 1 cut(s) 367
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 367
FaiI YATR 3 cut(s) 54, 234, 313
FauI CCCGC 1 cut(s) 312
FokI GGATG 1 cut(s) 314
FriOI GRGCYC 1 cut(s) 8
FspBI CTAG 1 cut(s) 394
GlaI GCGC 1 cut(s) 216
HaeIII GGCC 4 cut(s) 60, 116, 181, 263
HapII CCGG 1 cut(s) 353
HhaI GCGC 1 cut(s) 217
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HinfI GANTC 1 cut(s) 133
HpaII CCGG 1 cut(s) 353
HphI GGTGA 3 cut(s) 181, 217, 324
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 2 cut(s) 132, 165
Hpy188III TCNNGA 1 cut(s) 269
Hpy8I GTNNAC 1 cut(s) 28
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 2 cut(s) 45, 143
HpyF3I CTNAG 2 cut(s) 164, 254
HpySE526I ACGT 1 cut(s) 297
HspAI GCGC 1 cut(s) 215
LguI GCTCTTC 1 cut(s) 167
LmnI GCTCC 2 cut(s) 11, 291
LpnPI CCDG 5 cut(s) 31, 42, 163, 277, 366
LweI GCATC 1 cut(s) 130
MaeI CTAG 1 cut(s) 394
MaeII ACGT 1 cut(s) 297
MaeIII GTNAC 1 cut(s) 330
MboII GAAGA 2 cut(s) 184, 287
MfeI CAATTG 1 cut(s) 337
MhlI GDGCHC 2 cut(s) 8, 19
MlsI TGGCCA 1 cut(s) 181
MluCI AATT 6 cut(s) 40, 126, 186, 240, 324, 337
MluNI TGGCCA 1 cut(s) 181
MnlI CCTC 4 cut(s) 127, 159, 201, 253
Mox20I TGGCCA 1 cut(s) 181
MscI TGGCCA 1 cut(s) 181
MseI TTAA 2 cut(s) 35, 189
Msp20I TGGCCA 1 cut(s) 181
MspI CCGG 1 cut(s) 353
MunI CAATTG 1 cut(s) 337
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 1 cut(s) 330
PciSI GCTCTTC 1 cut(s) 167
PfeI GAWTC 1 cut(s) 133
PspN4I GGNNCC 1 cut(s) 7
SapI GCTCTTC 1 cut(s) 167
SaqAI TTAA 2 cut(s) 35, 189
SduI GDGCHC 2 cut(s) 8, 19
SetI ASST 7 cut(s) 73, 101, 179, 212, 233, 255, 300
SfaNI GCATC 1 cut(s) 130
Sse9I AATT 6 cut(s) 40, 126, 186, 240, 324, 337
SsiI CCGC 1 cut(s) 319
SspMI CTAG 1 cut(s) 394
StyI CCWWGG 1 cut(s) 367
TaiI ACGT 1 cut(s) 300
TasI AATT 6 cut(s) 40, 126, 186, 240, 324, 337
TfiI GAWTC 1 cut(s) 133
Tru1I TTAA 2 cut(s) 35, 189
Tru9I TTAA 2 cut(s) 35, 189
TseFI GTSAC 1 cut(s) 330
Tsp45I GTSAC 1 cut(s) 330
XapI RAATTY 1 cut(s) 126
XspI CTAG 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.