Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8398113.1

Orthogroup ID

OG0011397

Physical Location & Seq

Genomic Coordinates Reverse (-)

845 .. 1249

Gene Structure 405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8398113.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

atggggtctgtgagggctctatttgttcataggttgaggaattgtagggtttatactggccctgtgaccggttcggttctgattgaaggagttgaagagtgtgtttttgttatggcttcgcatcagattcgaattcacaatgcaaagaggtgtgatttttatctgagagtgaggagtaggcctataattgaggatagctgcggggtgaggtttgcgccgtactgtttgagttataatgggattgaggaagagcttagggggactagtcttgatgaggagacggagaattgggccaatgtggatgacttcctgtggttgagggcagttcagtcgccgaattggtctgtcttgccggagaatgagagagttggtttgatagatattttgagttcacaggaaagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005929 GO:0006457 GO:0006996 GO:0007010 GO:0007017 GO:0007021 GO:0008150 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022607 GO:0032391 GO:0034622 GO:0035869 GO:0042995 GO:0043005 GO:0043226 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044441 GO:0044444 GO:0044463 GO:0044464 GO:0065003 GO:0071840 GO:0097458 GO:0097730 GO:0097731 GO:0097733 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TBCC TBCC_N

Protein Analysis

134

Amino Acids

15.33

Weight (kDa)

5.19

Isoelectric Point (pI)

73.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39920
fragaria_vesca	FvH4_1g20700 FvH4_1g20700 FvH4_1g20700
malus_domestica	MD01G1031400.v1.1 MD05G1043000.v1.1
prunus_persica	Prupe.6G188100_v2.0.a1
pyrus_communis	pycom01g05900
rosa_chinensis	RchiOBHm_Chr2g0113151
rosa_laevigata	RLG00000018047
rosa_multiflora	Rmu_co8118374.1_g000001 Rmu_co8398113.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129570 Rroxscaffold_2G00129740
rosa_rugosa	Rorug02G0185800
rosa_samantha	Rh2AG240100 Rh2BG254000 Rh2CG244100 Rh2DG248000
rosa_wichuraiana	Rw2G018790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	234
AciI	CCGC	1 cut(s)	201
AcsI	RAATTY	1 cut(s)	132
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	68
AgeI	ACCGGT	1 cut(s)	68
AgsI	TTSAA	2 cut(s)	86, 95
AhlI	ACTAGT	1 cut(s)	263
AluBI	AGCT	2 cut(s)	198, 253
AluI	AGCT	2 cut(s)	198, 253
Alw26I	GTCTC	1 cut(s)	272
AoxI	GGCC	3 cut(s)	58, 179, 291
ApeKI	GCWGC	1 cut(s)	198
ApoI	RAATTY	1 cut(s)	132
AsiGI	ACCGGT	1 cut(s)	68
AspLEI	GCGC	1 cut(s)	217
AspS9I	GGNCC	2 cut(s)	59, 291
AsuHPI	GGTGA	1 cut(s)	217
AsuII	TTCGAA	1 cut(s)	130
BanII	GRGCYC	1 cut(s)	19
BbvI	GCAGC	1 cut(s)	185
BceAI	ACGGC	1 cut(s)	202
BcgI	CGANNNNNNTGC	4 cut(s)	110, 144, 312, 346
BcoDI	GTCTC	1 cut(s)	272
BcuI	ACTAGT	1 cut(s)	263
BfaI	CTAG	1 cut(s)	264
BisI	GCNGC	1 cut(s)	199
BlsI	GCNGC	1 cut(s)	200
BmgT120I	GGNCC	2 cut(s)	59, 291
BmsI	GCATC	1 cut(s)	130
Bpu10I	CCTNAGC	1 cut(s)	254
Bpu14I	TTCGAA	1 cut(s)	130
BsaBI	GATNNNNATC	1 cut(s)	159
BsaWI	WCCGGW	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	61
Bse8I	GATNNNNATC	1 cut(s)	159
BseGI	GGATG	1 cut(s)	307
BseJI	GATNNNNATC	1 cut(s)	159
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseMII	CTCAG	1 cut(s)	155
BseNI	ACTGG	1 cut(s)	61
BseRI	GAGGAG	2 cut(s)	187, 290
BseXI	GCAGC	1 cut(s)	185
BshFI	GGCC	3 cut(s)	60, 181, 293
BshTI	ACCGGT	1 cut(s)	68
BsiSI	CCGG	2 cut(s)	69, 353
BslFI	GGGAC	1 cut(s)	274
BslI	CCNNNNNNNGG	1 cut(s)	68
BsmAI	GTCTC	1 cut(s)	272
BsmBI	CGTCTC	1 cut(s)	272
BsmFI	GGGAC	1 cut(s)	274
BsnI	GGCC	3 cut(s)	60, 181, 293
Bsp119I	TTCGAA	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	19
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	3 cut(s)	60, 181, 293
BspCNI	CTCAG	1 cut(s)	156
BspQI	GCTCTTC	1 cut(s)	243
BspT104I	TTCGAA	1 cut(s)	130
BsrFI	RCCGGY	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	61
BssAI	RCCGGY	1 cut(s)	68
Bst4CI	ACNGT	1 cut(s)	224
Bst6I	CTCTTC	2 cut(s)	90, 243
BstBI	TTCGAA	1 cut(s)	130
BstDEI	CTNAG	2 cut(s)	164, 254
BstF5I	GGATG	1 cut(s)	307
BstHHI	GCGC	1 cut(s)	217
BstMAI	GTCTC	1 cut(s)	272
BstV1I	GCAGC	1 cut(s)	185
BsuRI	GGCC	3 cut(s)	60, 181, 293
BtsCI	GGATG	1 cut(s)	307
CfoI	GCGC	1 cut(s)	217
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	2 cut(s)	59, 291
Csp6I	GTAC	1 cut(s)	220
CspAI	ACCGGT	1 cut(s)	68
CviJI	RGCY	7 cut(s)	17, 60, 116, 181, 198, 253, 293
CviKI_1	RGCY	7 cut(s)	17, 60, 116, 181, 198, 253, 293
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	2 cut(s)	164, 254
Eam1104I	CTCTTC	2 cut(s)	90, 243
EarI	CTCTTC	2 cut(s)	90, 243
Eco147I	AGGCCT	1 cut(s)	181
Eco24I	GRGCYC	1 cut(s)	19
EcoRI	GAATTC	1 cut(s)	132
EcoT38I	GRGCYC	1 cut(s)	19
Esp3I	CGTCTC	1 cut(s)	272
FaiI	YATR	5 cut(s)	30, 54, 113, 185, 234
FaqI	GGGAC	1 cut(s)	274
FauI	CCCGC	1 cut(s)	194
Fnu4HI	GCNGC	1 cut(s)	199
FokI	GGATG	1 cut(s)	314
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	1 cut(s)	199
FspBI	CTAG	1 cut(s)	264
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	1 cut(s)	199
HaeIII	GGCC	3 cut(s)	60, 181, 293
HapII	CCGG	2 cut(s)	69, 353
HhaI	GCGC	1 cut(s)	217
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HinfI	GANTC	1 cut(s)	127
HpaII	CCGG	2 cut(s)	69, 353
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	1 cut(s)	392
Hpy188I	TCNGA	3 cut(s)	81, 126, 165
Hpy188III	TCNNGA	1 cut(s)	269
Hpy8I	GTNNAC	1 cut(s)	392
HpyAV	CCTTC	1 cut(s)	80
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4V	TGCA	1 cut(s)	143
HpyF3I	CTNAG	2 cut(s)	164, 254
HspAI	GCGC	1 cut(s)	215
LguI	GCTCTTC	1 cut(s)	243
LpnPI	CCDG	6 cut(s)	42, 75, 82, 323, 366, 380
Lsp1109I	GCAGC	1 cut(s)	185
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	1 cut(s)	264
MaeIII	GTNAC	1 cut(s)	64
MboII	GAAGA	2 cut(s)	107, 260
MhlI	GDGCHC	1 cut(s)	19
MluCI	AATT	5 cut(s)	40, 132, 186, 286, 337
MnlI	CCTC	9 cut(s)	6, 30, 141, 165, 184, 201, 238, 268, 312
MseI	TTAA	1 cut(s)	403
MspI	CCGG	2 cut(s)	69, 353
NmuCI	GTSAC	1 cut(s)	64
NspV	TTCGAA	1 cut(s)	130
PceI	AGGCCT	1 cut(s)	181
PciSI	GCTCTTC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	127
PinAI	ACCGGT	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	200
PsiI	TTATAA	1 cut(s)	234
PspPI	GGNCC	2 cut(s)	59, 291
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
SapI	GCTCTTC	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	403
SatI	GCNGC	1 cut(s)	199
Sau96I	GGNCC	2 cut(s)	59, 291
SduI	GDGCHC	1 cut(s)	19
SetI	ASST	5 cut(s)	35, 152, 200, 212, 255
SfaNI	GCATC	1 cut(s)	130
SfuI	TTCGAA	1 cut(s)	130
SgeI	CNNG	9 cut(s)	69, 74, 81, 214, 276, 281, 322, 361, 365
SpeI	ACTAGT	1 cut(s)	263
Sse9I	AATT	5 cut(s)	40, 132, 186, 286, 337
SseBI	AGGCCT	1 cut(s)	181
SsiI	CCGC	1 cut(s)	201
SspMI	CTAG	1 cut(s)	264
StuI	AGGCCT	1 cut(s)	181
TaaI	ACNGT	1 cut(s)	224
TaqI	TCGA	1 cut(s)	130
TasI	AATT	5 cut(s)	40, 132, 186, 286, 337
TfiI	GAWTC	1 cut(s)	127
Tru1I	TTAA	1 cut(s)	403
Tru9I	TTAA	1 cut(s)	403
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	1 cut(s)	198
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	296
XapI	RAATTY	1 cut(s)	132
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.