Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0011397

Physical Location & Seq

Genomic Coordinates Reverse (-)

25506977 .. 25509234

Gene Structure 2258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG248000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGAAAATGAAACACCAAACCCTACCCAAGAAGAAGCCCTAGATTCCGACCCAGCTCTCCAAAAGAAGCACCAATCCATGCTCGACCGCCTCACCCACCGCCACCAATCCCGCCTCGACACCACCCTCACGCGCCGCGCCGCCGCCGACTCCTCCGACCCCTCCCCTTCCTTCGAGTCCACCTCCACCTTCCTCTCCCGATTCTCCACCTCCAAGTCCTCCGTCGACTCCCAACTCGCCCAGTGCCGACTCACCGATCCCGCTCACCTCAAACCCCTCCTCGACCAAATCTCCGCCTCCATCTCCGACCTCGAGAAGCTCGTCGCCGAGAACTCCTACTTCCTCCCCTCATACGAAGTCCGATCGTCGCTCAAAACGATCTCCGATCTGAGACAAACCCTAGAGAACCTGAGCGCCGAGTTACTGCCGAAGAAGAAATTCTCTTTCAGAAACAAAGGTGCCAAGAAAACCGAGCCAAAGGAGGAGGAGAAGGAGAAAGAGCCGGAGAAAATGGAGTTCATAGTTCCGGCGTCGCCGGGGATTTGGAACAAGAAAGGGGAGACCTTAGTGAGGAAGTTTCAGTGCTCGGAAGTCGGAGAATTCACGATTTCGGACCTGGATTCCTGCGAGGTGAGGCTTATGGGGTCTGTGAGGGCGCTATTTGTTCATAGATTGAGGAATTGTAGGGTTTATACTGGCCCTGTGACCGGTTCGGTTCTGATTGAAGGAGTTGAAGAGTGTGTTTTTGTTATGGCGTCGCATCAGATTCGAATTCACAATGCAAAGAGGTGTGATTTTTATCTGAGAGTGAGGAGCAGGCCTATAATTGAGGATAGCTGCGGGGTGAGGTTTGCCCCGTACTGTTTGAGTTATAATGGGATTGAGGAAGAGCTTAGGGAGACTAGTCTTGATGAGGAGACGGAGAATTGGGCCAATGTGGATGACTTCTTGTGGTTGAGGGCAGTTCAGTCACCGAATTGGTCTGTCTTGCCGGAGAATGAGAGAGTTGGTTTGATAGATATTTCGAGTTCGGAGGAAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005929 GO:0006457 GO:0006996 GO:0007010 GO:0007017 GO:0007021 GO:0008150 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022607 GO:0032391 GO:0034622 GO:0035869 GO:0042995 GO:0043005 GO:0043226 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044441 GO:0044444 GO:0044463 GO:0044464 GO:0065003 GO:0071840 GO:0097458 GO:0097730 GO:0097731 GO:0097733 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TBCC TBCC_N

Protein Analysis

347

Amino Acids

39.43

Weight (kDa)

5.33

Isoelectric Point (pI)

62.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TBCC_N	PF16752	29 - 145	1.4e-30	Tubulin-specific chaperone C N-terminal domain
TBCC	PF07986	200 - 316	3.1e-39	Tubulin binding cofactor C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39920
fragaria_vesca	FvH4_1g20700 FvH4_1g20700 FvH4_1g20700
malus_domestica	MD01G1031400.v1.1 MD05G1043000.v1.1
prunus_persica	Prupe.6G188100_v2.0.a1
pyrus_communis	pycom01g05900
rosa_chinensis	RchiOBHm_Chr2g0113151
rosa_laevigata	RLG00000018047
rosa_multiflora	Rmu_co8118374.1_g000001 Rmu_co8398113.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129570 Rroxscaffold_2G00129740
rosa_rugosa	Rorug02G0185800
rosa_samantha	Rh2AG240100 Rh2BG254000 Rh2CG244100 Rh2DG248000
rosa_wichuraiana	Rw2G018790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	873
AccB1I	GGYRCC	1 cut(s)	458
AccBSI	CCGCTC	1 cut(s)	263
AccI	GTMKAC	1 cut(s)	225
AccII	CGCG	2 cut(s)	133, 138
AciI	CCGC	9 cut(s)	88, 100, 112, 136, 141, 144, 261, 294, 840
AclWI	GGATC	1 cut(s)	251
AcsI	RAATTY	3 cut(s)	437, 599, 771
AcyI	GRCGYC	2 cut(s)	530, 755
AfaI	GTAC	1 cut(s)	860
AfiI	CCNNNNNNNGG	2 cut(s)	570, 707
AgeI	ACCGGT	1 cut(s)	707
AgsI	TTSAA	2 cut(s)	725, 734
AhlI	ACTAGT	1 cut(s)	902
AjnI	CCWGG	1 cut(s)	615
AluBI	AGCT	4 cut(s)	56, 319, 837, 892
AluI	AGCT	4 cut(s)	56, 319, 837, 892
Alw21I	GWGCWC	1 cut(s)	587
Alw26I	GTCTC	4 cut(s)	385, 554, 893, 911
AlwI	GGATC	1 cut(s)	251
Ama87I	CYCGRG	1 cut(s)	311
AoxI	GGCC	3 cut(s)	697, 818, 930
ApeKI	GCWGC	1 cut(s)	837
ApoI	RAATTY	3 cut(s)	437, 599, 771
AsiGI	ACCGGT	1 cut(s)	707
Asp700I	GAANNNNTTC	1 cut(s)	437
AspLEI	GCGC	4 cut(s)	135, 140, 416, 658
AspS9I	GGNCC	3 cut(s)	613, 698, 930
AsuC2I	CCSGG	1 cut(s)	537
AsuHPI	GGTGA	6 cut(s)	85, 244, 257, 643, 856, 963
AsuII	TTCGAA	1 cut(s)	769
AvaI	CYCGRG	1 cut(s)	311
AvaII	GGWCC	1 cut(s)	613
BanI	GGYRCC	1 cut(s)	458
Bbv12I	GWGCWC	1 cut(s)	587
BbvI	GCAGC	1 cut(s)	824
BccI	CCATC	1 cut(s)	308
BcgI	CGANNNNNNTGC	2 cut(s)	749, 783
BciT130I	CCWGG	1 cut(s)	617
BcnI	CCSGG	1 cut(s)	537
BcoDI	GTCTC	4 cut(s)	385, 554, 893, 911
BcuI	ACTAGT	1 cut(s)	902
BfaI	CTAG	3 cut(s)	41, 401, 903
BfoI	RGCGCY	2 cut(s)	417, 659
BisI	GCNGC	4 cut(s)	136, 141, 144, 838
BlsI	GCNGC	4 cut(s)	137, 142, 145, 839
Bme1390I	CCNGG	2 cut(s)	537, 617
Bme18I	GGWCC	1 cut(s)	613
BmeT110I	CYCGRG	1 cut(s)	311
BmgT120I	GGNCC	3 cut(s)	613, 698, 930
BmiI	GGNNCC	1 cut(s)	460
BmrFI	CCNGG	2 cut(s)	537, 617
BmrI	ACTGGG	1 cut(s)	235
BmsI	GCATC	1 cut(s)	769
BmuI	ACTGGG	1 cut(s)	235
BplI	GAGNNNNNCTC	2 cut(s)	167, 199
Bpu10I	CCTNAGC	2 cut(s)	410, 893
Bpu14I	TTCGAA	1 cut(s)	769
BpuMI	CCSGG	1 cut(s)	537
BsaBI	GATNNNNATC	1 cut(s)	798
BsaHI	GRCGYC	2 cut(s)	530, 755
BsaI	GGTCTC	1 cut(s)	554
BsaJI	CCNNGG	1 cut(s)	536
BsaWI	WCCGGW	1 cut(s)	707
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	2 cut(s)	570, 707
Bse118I	RCCGGY	1 cut(s)	707
Bse1I	ACTGG	2 cut(s)	241, 700
Bse8I	GATNNNNATC	1 cut(s)	798
BseBI	CCWGG	1 cut(s)	617
BseDI	CCNNGG	1 cut(s)	536
BseGI	GGATG	1 cut(s)	946
BseJI	GATNNNNATC	1 cut(s)	798
BseLI	CCNNNNNNNGG	2 cut(s)	570, 707
BseMII	CTCAG	3 cut(s)	380, 401, 794
BseNI	ACTGG	2 cut(s)	241, 700
BseRI	GAGGAG	6 cut(s)	142, 269, 497, 500, 826, 929
BseXI	GCAGC	1 cut(s)	824
BseYI	CCCAGC	1 cut(s)	52
Bsh1236I	CGCG	2 cut(s)	133, 138
Bsh1285I	CGRYCG	2 cut(s)	88, 365
BshFI	GGCC	3 cut(s)	699, 820, 932
BshNI	GGYRCC	1 cut(s)	458
BshTI	ACCGGT	1 cut(s)	707
BsiEI	CGRYCG	2 cut(s)	88, 365
BsiHKAI	GWGCWC	1 cut(s)	587
BsiHKCI	CYCGRG	1 cut(s)	311
BsiSI	CCGG	5 cut(s)	503, 527, 536, 708, 992
BslI	CCNNNNNNNGG	2 cut(s)	570, 707
BsmAI	GTCTC	4 cut(s)	385, 554, 893, 911
BsmBI	CGTCTC	1 cut(s)	911
BsnI	GGCC	3 cut(s)	699, 820, 932
Bso31I	GGTCTC	1 cut(s)	554
BsoBI	CYCGRG	1 cut(s)	311
Bsp119I	TTCGAA	1 cut(s)	769
Bsp1286I	GDGCHC	1 cut(s)	587
Bsp143I	GATC	4 cut(s)	256, 362, 378, 385
BspACI	CCGC	9 cut(s)	88, 100, 112, 136, 141, 144, 261, 294, 840
BspANI	GGCC	3 cut(s)	699, 820, 932
BspCNI	CTCAG	3 cut(s)	381, 402, 795
BspFNI	CGCG	2 cut(s)	133, 138
BspLI	GGNNCC	1 cut(s)	460
BspPI	GGATC	1 cut(s)	251
BspQI	GCTCTTC	1 cut(s)	882
BspT104I	TTCGAA	1 cut(s)	769
BspT107I	GGYRCC	1 cut(s)	458
BspTNI	GGTCTC	1 cut(s)	554
BsrBI	CCGCTC	1 cut(s)	263
BsrFI	RCCGGY	1 cut(s)	707
BsrI	ACTGG	2 cut(s)	241, 700
BssAI	RCCGGY	1 cut(s)	707
BssECI	CCNNGG	1 cut(s)	536
BssMI	GATC	4 cut(s)	256, 362, 378, 385
BssNI	GRCGYC	2 cut(s)	530, 755
Bst2UI	CCWGG	1 cut(s)	617
Bst4CI	ACNGT	1 cut(s)	863
Bst6I	CTCTTC	2 cut(s)	729, 882
BstACI	GRCGYC	2 cut(s)	530, 755
BstBI	TTCGAA	1 cut(s)	769
BstC8I	GCNNGC	1 cut(s)	818
BstDEI	CTNAG	5 cut(s)	389, 410, 565, 803, 893
BstENI	CCTNNNNNAGG	1 cut(s)	568
BstF5I	GGATG	1 cut(s)	946
BstFNI	CGCG	2 cut(s)	133, 138
BstH2I	RGCGCY	2 cut(s)	417, 659
BstHHI	GCGC	4 cut(s)	135, 140, 416, 658
BstKTI	GATC	4 cut(s)	259, 365, 381, 388
BstMAI	GTCTC	4 cut(s)	385, 554, 893, 911
BstMBI	GATC	4 cut(s)	256, 362, 378, 385
BstMCI	CGRYCG	2 cut(s)	88, 365
BstNI	CCWGG	1 cut(s)	617
BstSCI	CCNGG	2 cut(s)	535, 615
BstUI	CGCG	2 cut(s)	133, 138
BstV1I	GCAGC	1 cut(s)	824
BsuRI	GGCC	3 cut(s)	699, 820, 932
BtsCI	GGATG	1 cut(s)	946
BtsIMutI	CAGTG	2 cut(s)	248, 587
Cac8I	GCNNGC	1 cut(s)	818
CfoI	GCGC	4 cut(s)	135, 140, 416, 658
Cfr10I	RCCGGY	1 cut(s)	707
Cfr13I	GGNCC	3 cut(s)	613, 698, 930
CseI	GACGC	2 cut(s)	519, 744
Csp6I	GTAC	1 cut(s)	859
CspAI	ACCGGT	1 cut(s)	707
CviAII	CATG	1 cut(s)	79
CviQI	GTAC	1 cut(s)	859
DdeI	CTNAG	5 cut(s)	389, 410, 565, 803, 893
DpnI	GATC	4 cut(s)	258, 364, 380, 387
DpnII	GATC	4 cut(s)	256, 362, 378, 385
Eam1104I	CTCTTC	2 cut(s)	729, 882
EarI	CTCTTC	2 cut(s)	729, 882
EciI	GGCGGA	1 cut(s)	283
Eco147I	AGGCCT	1 cut(s)	820
Eco31I	GGTCTC	1 cut(s)	554
Eco47I	GGWCC	1 cut(s)	613
Eco88I	CYCGRG	1 cut(s)	311
EcoNI	CCTNNNNNAGG	1 cut(s)	568
EcoRI	GAATTC	2 cut(s)	599, 771
EcoRII	CCWGG	1 cut(s)	615
Esp3I	CGTCTC	1 cut(s)	911
FaeI	CATG	1 cut(s)	82
FaiI	YATR	9 cut(s)	80, 352, 521, 641, 669, 693, 752, 824, 873
FatI	CATG	1 cut(s)	78
FauI	CCCGC	3 cut(s)	119, 268, 833
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	4 cut(s)	136, 141, 144, 838
FokI	GGATG	1 cut(s)	953
Fsp4HI	GCNGC	4 cut(s)	136, 141, 144, 838
FspBI	CTAG	3 cut(s)	41, 401, 903
GlaI	GCGC	4 cut(s)	134, 139, 415, 657
GluI	GCNGC	4 cut(s)	136, 141, 144, 838
GsaI	CCCAGC	1 cut(s)	56
HaeII	RGCGCY	2 cut(s)	417, 659
HaeIII	GGCC	3 cut(s)	699, 820, 932
HapII	CCGG	5 cut(s)	503, 527, 536, 708, 992
HgaI	GACGC	2 cut(s)	519, 744
HhaI	GCGC	4 cut(s)	135, 140, 416, 658
Hin1I	GRCGYC	2 cut(s)	530, 755
Hin1II	CATG	1 cut(s)	82
Hin6I	GCGC	4 cut(s)	133, 138, 414, 656
HinP1I	GCGC	4 cut(s)	133, 138, 414, 656
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	8 cut(s)	44, 149, 176, 201, 227, 249, 620, 766
HpaII	CCGG	5 cut(s)	503, 527, 536, 708, 992
HphI	GGTGA	6 cut(s)	85, 244, 257, 643, 856, 963
Hpy166II	GTNNAC	2 cut(s)	180, 226
Hpy188III	TCNNGA	4 cut(s)	198, 313, 604, 908
Hpy8I	GTNNAC	2 cut(s)	180, 226
Hpy99I	CGWCG	5 cut(s)	227, 326, 370, 535, 760
HpyAV	CCTTC	5 cut(s)	177, 181, 199, 484, 719
HpyCH4III	ACNGT	1 cut(s)	863
HpyCH4V	TGCA	1 cut(s)	782
HpyF3I	CTNAG	5 cut(s)	389, 410, 565, 803, 893
Hsp92I	GRCGYC	2 cut(s)	530, 755
Hsp92II	CATG	1 cut(s)	82
HspAI	GCGC	4 cut(s)	133, 138, 414, 656
Kzo9I	GATC	4 cut(s)	256, 362, 378, 385
LguI	GCTCTTC	1 cut(s)	882
LmnI	GCTCC	1 cut(s)	813
Lsp1109I	GCAGC	1 cut(s)	824
LweI	GCATC	1 cut(s)	769
MaeI	CTAG	3 cut(s)	41, 401, 903
MaeIII	GTNAC	3 cut(s)	420, 703, 969
MalI	GATC	4 cut(s)	258, 364, 380, 387
MbiI	CCGCTC	1 cut(s)	263
MboI	GATC	4 cut(s)	256, 362, 378, 385
MboII	GAAGA	5 cut(s)	44, 442, 445, 746, 899
MhlI	GDGCHC	1 cut(s)	587
MluCI	AATT	7 cut(s)	437, 599, 679, 771, 825, 925, 976
MlyI	GAGTC	4 cut(s)	143, 185, 221, 243
MmeI	TCCRAC	4 cut(s)	72, 180, 330, 574
MroXI	GAANNNNTTC	1 cut(s)	437
MseI	TTAA	1 cut(s)	1042
MspI	CCGG	5 cut(s)	503, 527, 536, 708, 992
MspR9I	CCNGG	2 cut(s)	537, 617
MteI	GCGCNGCGC	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	617
MvnI	CGCG	2 cut(s)	133, 138
NciI	CCSGG	1 cut(s)	537
NdeII	GATC	4 cut(s)	256, 362, 378, 385
NlaIII	CATG	1 cut(s)	82
NlaIV	GGNNCC	1 cut(s)	460
NmeAIII	GCCGAG	2 cut(s)	352, 442
NmuCI	GTSAC	2 cut(s)	703, 969
NspV	TTCGAA	1 cut(s)	769
PaeR7I	CTCGAG	1 cut(s)	311
PceI	AGGCCT	1 cut(s)	820
PciSI	GCTCTTC	1 cut(s)	882
PcsI	WCGNNNNNNNCGW	2 cut(s)	318, 374
PdmI	GAANNNNTTC	1 cut(s)	437
PfeI	GAWTC	4 cut(s)	44, 201, 620, 766
PinAI	ACCGGT	1 cut(s)	707
PkrI	GCNGC	4 cut(s)	137, 142, 145, 839
Ple19I	CGATCG	1 cut(s)	365
PleI	GAGTC	4 cut(s)	143, 184, 221, 243
PpsI	GAGTC	4 cut(s)	143, 184, 221, 243
PsiI	TTATAA	1 cut(s)	873
Psp6I	CCWGG	1 cut(s)	615
PspFI	CCCAGC	1 cut(s)	52
PspGI	CCWGG	1 cut(s)	615
PspN4I	GGNNCC	1 cut(s)	460
PspPI	GGNCC	3 cut(s)	613, 698, 930
PvuI	CGATCG	1 cut(s)	365
RsaI	GTAC	1 cut(s)	860
RsaNI	GTAC	1 cut(s)	859
SalI	GTCGAC	1 cut(s)	224
SapI	GCTCTTC	1 cut(s)	882
SaqAI	TTAA	1 cut(s)	1042
SatI	GCNGC	4 cut(s)	136, 141, 144, 838
Sau3AI	GATC	4 cut(s)	256, 362, 378, 385
Sau96I	GGNCC	3 cut(s)	613, 698, 930
SchI	GAGTC	4 cut(s)	143, 185, 221, 243
ScrFI	CCNGG	2 cut(s)	537, 617
SduI	GDGCHC	1 cut(s)	587
SfaNI	GCATC	1 cut(s)	769
Sfr274I	CTCGAG	1 cut(s)	311
SfuI	TTCGAA	1 cut(s)	769
SinI	GGWCC	1 cut(s)	613
SlaI	CTCGAG	1 cut(s)	311
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
SpeI	ACTAGT	1 cut(s)	902
Sse9I	AATT	7 cut(s)	437, 599, 679, 771, 825, 925, 976
SseBI	AGGCCT	1 cut(s)	820
SsiI	CCGC	9 cut(s)	88, 100, 112, 136, 141, 144, 261, 294, 840
SspMI	CTAG	3 cut(s)	41, 401, 903
StuI	AGGCCT	1 cut(s)	820
StyD4I	CCNGG	2 cut(s)	535, 615
TaaI	ACNGT	1 cut(s)	863
TaqI	TCGA	8 cut(s)	84, 117, 174, 225, 282, 312, 769, 1025
TasI	AATT	7 cut(s)	437, 599, 679, 771, 825, 925, 976
TauI	GCSGC	3 cut(s)	138, 143, 146
TfiI	GAWTC	4 cut(s)	44, 201, 620, 766
Tru1I	TTAA	1 cut(s)	1042
Tru9I	TTAA	1 cut(s)	1042
TscAI	CASTG	2 cut(s)	248, 587
TseFI	GTSAC	2 cut(s)	703, 969
TseI	GCWGC	1 cut(s)	837
Tsp45I	GTSAC	2 cut(s)	703, 969
TspDTI	ATGAA	3 cut(s)	24, 508, 656
TspGWI	ACGGA	2 cut(s)	211, 935
TspRI	CASTG	2 cut(s)	248, 587
VpaK11BI	GGWCC	1 cut(s)	613
XagI	CCTNNNNNAGG	1 cut(s)	568
XapI	RAATTY	3 cut(s)	437, 599, 771
XhoI	CTCGAG	1 cut(s)	311
XmiI	GTMKAC	1 cut(s)	225
XmnI	GAANNNNTTC	1 cut(s)	437
XspI	CTAG	3 cut(s)	41, 401, 903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.