Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0011397

Physical Location & Seq

Genomic Coordinates Reverse (-)

7316812 .. 7318206

Gene Structure 1395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1043000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGAAAATGAAGAAGAAGTAGCTTTGTCATCAAACCCTAACTCTAACCTCCTAGTTGCAGATCCATCCCTCCAAAAGAAGCGCCAATCAATGCTTGACCGCCTCTCCAACCGCCACCAAACTCGTTTAGACAACTCACTCACCCACAGATCCGCCGAGTCCGACTCGTCCTCTTCCCCTTCCTTCGAGTCCACATCAACTTTCCTCTCCCGCTTTTCCAACTCCAAGAGCTCCATCGAGTCCCAACTCGCCCAATGCCAGCTTTGTGACCCAACTCAAGTCAAGTCCCACCTCGACCAAATCTCCTCCTCCATCTTCGATCTCGAGAAGCTCGTGGCCGAGAACTCGTACTTCTTACCCTCCTATGAAGTTAGGTCCTCGCTCAAGACGACGTCGGATTTGCGGCAGAGTCTTGAGTTTTTGAGCGCCGAGTTGTTACCCAAAAAGAAATTCTCTTTCAGAAACAAACCCACCAGAAAAGACCCAATTGCAGAACCCAAAGGGGAGGAGAAAGAGCAGGAACCTGAGAAGAAATCGGGTTTTCGGGTTCCAGACTCTCCGGGTTTCCGGAACAAGAAAGGAGAGATTTTGGTGCATAATTTTAAGGGATCGGAAGTGGGAGAGTTTTCGATTTCGGACCTTGATTCCTGTGAGGTGAGGCTAATGGGCTCCGTGAGAGCGCTTTTTATTCATAGATTAAGGAATTGCAGGCTTTATACTGGCCCTGTGACGGGTTCAGTTTTGGTTGATGGTGTTGAAGGGTGTGTTTTTGTGATGGCCTCCCATCAAATTCGGATTCACAATGCGAAAATGAGTGATTTTTATCTGAGGGTGAGGAGCCGGCCAATAATTGAGGATAGTTGTGGGGTGAGGTTTGCGCCGTACTGTTTGACCTATAAAGGAATAGAGGAAGAGCTTAGGGAGGCCAGTCTTGACGAAGAGACAGAGAAATGGAGCAACGTGGATGATTTCCTATGGTTGCGGGCAGTTCAGTCGCCCAATTGGTCTGTTTTGCCAGAGAATGAGAGACTTGGTTTGGTTGATATTTCAAGGTCCGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005929 GO:0006457 GO:0006996 GO:0007010 GO:0007017 GO:0007021 GO:0008150 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022607 GO:0032391 GO:0034622 GO:0035869 GO:0042995 GO:0043005 GO:0043226 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044441 GO:0044444 GO:0044463 GO:0044464 GO:0065003 GO:0071840 GO:0097458 GO:0097730 GO:0097731 GO:0097733 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TBCC TBCC_N

Protein Analysis

354

Amino Acids

40.01

Weight (kDa)

5.92

Isoelectric Point (pI)

63.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TBCC_N	PF16752	33 - 149	1.5e-30	Tubulin-specific chaperone C N-terminal domain
TBCC	PF07986	208 - 324	1e-37	Tubulin binding cofactor C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39920
fragaria_vesca	FvH4_1g20700 FvH4_1g20700 FvH4_1g20700
malus_domestica	MD01G1031400.v1.1 MD05G1043000.v1.1
prunus_persica	Prupe.6G188100_v2.0.a1
pyrus_communis	pycom01g05900
rosa_chinensis	RchiOBHm_Chr2g0113151
rosa_laevigata	RLG00000018047
rosa_multiflora	Rmu_co8118374.1_g000001 Rmu_co8398113.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129570 Rroxscaffold_2G00129740
rosa_rugosa	Rorug02G0185800
rosa_samantha	Rh2AG240100 Rh2BG254000 Rh2CG244100 Rh2DG248000
rosa_wichuraiana	Rw2G018790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	395
AccIII	TCCGGA	1 cut(s)	567
AciI	CCGC	6 cut(s)	100, 112, 153, 211, 403, 982
AclWI	GGATC	3 cut(s)	56, 144, 616
AcoI	YGGCCR	2 cut(s)	336, 842
AcsI	RAATTY	2 cut(s)	449, 789
AcyI	GRCGYC	1 cut(s)	392
AfaI	GTAC	2 cut(s)	350, 884
AfeI	AGCGCT	1 cut(s)	681
AfiI	CCNNNNNNNGG	2 cut(s)	730, 731
AgsI	TTSAA	2 cut(s)	758, 1050
AjuI	GAANNNNNNNTTGG	2 cut(s)	434, 466
AluBI	AGCT	5 cut(s)	23, 231, 262, 331, 916
AluI	AGCT	5 cut(s)	23, 231, 262, 331, 916
Alw21I	GWGCWC	1 cut(s)	233
Alw26I	GTCTC	2 cut(s)	935, 1021
AlwI	GGATC	3 cut(s)	56, 144, 616
Ama87I	CYCGRG	1 cut(s)	323
Aor13HI	TCCGGA	1 cut(s)	567
Aor51HI	AGCGCT	1 cut(s)	681
AoxI	GGCC	5 cut(s)	336, 721, 777, 842, 924
ApoI	RAATTY	2 cut(s)	449, 789
ArsI	GACNNNNNNTTYG	2 cut(s)	382, 414
AspLEI	GCGC	4 cut(s)	84, 428, 682, 880
AspS9I	GGNCC	4 cut(s)	375, 637, 722, 1053
AsuC2I	CCSGG	1 cut(s)	561
AsuHPI	GGTGA	4 cut(s)	133, 667, 844, 880
AvaI	CYCGRG	1 cut(s)	323
AvaII	GGWCC	3 cut(s)	375, 637, 1053
BanII	GRGCYC	2 cut(s)	233, 671
BauI	CACGAG	1 cut(s)	332
Bbv12I	GWGCWC	1 cut(s)	233
BccI	CCATC	6 cut(s)	73, 242, 320, 743, 769, 792
BceAI	ACGGC	1 cut(s)	865
BcgI	CGANNNNNNTGC	2 cut(s)	975, 1009
BcnI	CCSGG	1 cut(s)	561
BcoDI	GTCTC	2 cut(s)	935, 1021
BfaI	CTAG	1 cut(s)	53
BfoI	RGCGCY	3 cut(s)	85, 429, 683
BisI	GCNGC	1 cut(s)	404
BlsI	GCNGC	1 cut(s)	405
Bme1390I	CCNGG	1 cut(s)	561
Bme18I	GGWCC	3 cut(s)	375, 637, 1053
BmeT110I	CYCGRG	1 cut(s)	323
BmgT120I	GGNCC	4 cut(s)	375, 637, 722, 1053
BmiI	GGNNCC	4 cut(s)	522, 549, 670, 839
BmrFI	CCNGG	1 cut(s)	561
BplI	GAGNNNNNCTC	2 cut(s)	149, 181
Bpu10I	CCTNAGC	1 cut(s)	917
BpuEI	CTTGAG	3 cut(s)	261, 368, 434
BpuMI	CCSGG	1 cut(s)	561
BsaBI	GATNNNNATC	1 cut(s)	822
BsaHI	GRCGYC	1 cut(s)	392
BsaWI	WCCGGW	1 cut(s)	567
BsaXI	ACNNNNNCTCC	4 cut(s)	89, 119, 287, 317
Bsc4I	CCNNNNNNNGG	2 cut(s)	730, 731
Bse118I	RCCGGY	1 cut(s)	840
Bse1I	ACTGG	2 cut(s)	724, 927
Bse8I	GATNNNNATC	1 cut(s)	822
BseAI	TCCGGA	1 cut(s)	567
BseGI	GGATG	2 cut(s)	65, 970
BseJI	GATNNNNATC	1 cut(s)	822
BseLI	CCNNNNNNNGG	2 cut(s)	730, 731
BseMII	CTCAG	2 cut(s)	516, 818
BseNI	ACTGG	2 cut(s)	724, 927
BseRI	GAGGAG	4 cut(s)	295, 298, 521, 850
BshFI	GGCC	5 cut(s)	338, 723, 779, 844, 926
BsiHKAI	GWGCWC	1 cut(s)	233
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	3 cut(s)	560, 568, 841
BslFI	GGGAC	2 cut(s)	226, 271
BslI	CCNNNNNNNGG	2 cut(s)	730, 731
BsmAI	GTCTC	2 cut(s)	935, 1021
BsmFI	GGGAC	2 cut(s)	226, 271
BsnI	GGCC	5 cut(s)	338, 723, 779, 844, 926
BsoBI	CYCGRG	1 cut(s)	323
Bsp1286I	GDGCHC	2 cut(s)	233, 671
Bsp13I	TCCGGA	1 cut(s)	567
Bsp143I	GATC	4 cut(s)	61, 149, 319, 608
BspACI	CCGC	6 cut(s)	100, 112, 153, 211, 403, 982
BspANI	GGCC	5 cut(s)	338, 723, 779, 844, 926
BspCNI	CTCAG	2 cut(s)	517, 819
BspEI	TCCGGA	1 cut(s)	567
BspLI	GGNNCC	4 cut(s)	522, 549, 670, 839
BspPI	GGATC	3 cut(s)	56, 144, 616
BspQI	GCTCTTC	1 cut(s)	906
BsrFI	RCCGGY	1 cut(s)	840
BsrI	ACTGG	2 cut(s)	724, 927
BssAI	RCCGGY	1 cut(s)	840
BssMI	GATC	4 cut(s)	61, 149, 319, 608
BssNI	GRCGYC	1 cut(s)	392
BssSI	CACGAG	1 cut(s)	332
Bst2BI	CACGAG	1 cut(s)	332
Bst4CI	ACNGT	1 cut(s)	887
Bst6I	CTCTTC	3 cut(s)	178, 906, 933
BstACI	GRCGYC	1 cut(s)	392
BstC8I	GCNNGC	4 cut(s)	260, 710, 842, 984
BstDEI	CTNAG	3 cut(s)	525, 827, 917
BstF5I	GGATG	2 cut(s)	65, 970
BstH2I	RGCGCY	3 cut(s)	85, 429, 683
BstHHI	GCGC	4 cut(s)	84, 428, 682, 880
BstKTI	GATC	4 cut(s)	64, 152, 322, 611
BstMAI	GTCTC	2 cut(s)	935, 1021
BstMBI	GATC	4 cut(s)	61, 149, 319, 608
BstSCI	CCNGG	1 cut(s)	559
BstX2I	RGATCY	2 cut(s)	61, 149
BstYI	RGATCY	2 cut(s)	61, 149
BsuRI	GGCC	5 cut(s)	338, 723, 779, 844, 926
BtsCI	GGATG	2 cut(s)	65, 970
Cac8I	GCNNGC	4 cut(s)	260, 710, 842, 984
CfoI	GCGC	4 cut(s)	84, 428, 682, 880
Cfr10I	RCCGGY	1 cut(s)	840
Cfr13I	GGNCC	4 cut(s)	375, 637, 722, 1053
Csp6I	GTAC	2 cut(s)	349, 883
CviQI	GTAC	2 cut(s)	349, 883
DdeI	CTNAG	3 cut(s)	525, 827, 917
DpnI	GATC	4 cut(s)	63, 151, 321, 610
DpnII	GATC	4 cut(s)	61, 149, 319, 608
EaeI	YGGCCR	2 cut(s)	336, 842
Eam1104I	CTCTTC	3 cut(s)	178, 906, 933
EarI	CTCTTC	3 cut(s)	178, 906, 933
EciI	GGCGGA	1 cut(s)	142
Ecl136II	GAGCTC	1 cut(s)	231
Eco24I	GRGCYC	2 cut(s)	233, 671
Eco47I	GGWCC	3 cut(s)	375, 637, 1053
Eco47III	AGCGCT	1 cut(s)	681
Eco53kI	GAGCTC	1 cut(s)	231
Eco88I	CYCGRG	1 cut(s)	323
EcoICRI	GAGCTC	1 cut(s)	231
EcoO109I	RGGNCCY	1 cut(s)	375
EcoT38I	GRGCYC	2 cut(s)	233, 671
FaiI	YATR	6 cut(s)	366, 597, 693, 717, 897, 976
FaqI	GGGAC	2 cut(s)	226, 271
FauI	CCCGC	2 cut(s)	218, 975
Fnu4HI	GCNGC	1 cut(s)	404
FokI	GGATG	2 cut(s)	52, 977
FriOI	GRGCYC	2 cut(s)	233, 671
Fsp4HI	GCNGC	1 cut(s)	404
FspBI	CTAG	1 cut(s)	53
GlaI	GCGC	4 cut(s)	83, 427, 681, 879
GluI	GCNGC	1 cut(s)	404
HaeII	RGCGCY	3 cut(s)	85, 429, 683
HaeIII	GGCC	5 cut(s)	338, 723, 779, 844, 926
HapII	CCGG	3 cut(s)	560, 568, 841
HhaI	GCGC	4 cut(s)	84, 428, 682, 880
Hin1I	GRCGYC	1 cut(s)	392
Hin6I	GCGC	4 cut(s)	82, 426, 680, 878
HinP1I	GCGC	4 cut(s)	82, 426, 680, 878
HinfI	GANTC	8 cut(s)	158, 164, 188, 239, 409, 554, 644, 796
HpaII	CCGG	3 cut(s)	560, 568, 841
HphI	GGTGA	4 cut(s)	133, 667, 844, 880
Hpy166II	GTNNAC	1 cut(s)	192
Hpy188I	TCNGA	7 cut(s)	163, 397, 461, 613, 637, 795, 828
Hpy188III	TCNNGA	7 cut(s)	323, 325, 385, 413, 551, 568, 932
Hpy8I	GTNNAC	1 cut(s)	192
Hpy99I	CGWCG	2 cut(s)	394, 397
HpyAV	CCTTC	3 cut(s)	189, 193, 752
HpyCH4III	ACNGT	1 cut(s)	887
HpyCH4IV	ACGT	2 cut(s)	392, 960
HpyCH4V	TGCA	4 cut(s)	59, 491, 595, 708
HpyF3I	CTNAG	3 cut(s)	525, 827, 917
HpySE526I	ACGT	2 cut(s)	392, 960
Hsp92I	GRCGYC	1 cut(s)	392
HspAI	GCGC	4 cut(s)	82, 426, 680, 878
Kpn2I	TCCGGA	1 cut(s)	567
KroI	GCCGGC	1 cut(s)	840
KroNI	GCCGGC	1 cut(s)	842
Kzo9I	GATC	4 cut(s)	61, 149, 319, 608
LguI	GCTCTTC	1 cut(s)	906
LmnI	GCTCC	4 cut(s)	236, 674, 837, 954
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	2 cut(s)	392, 960
MaeIII	GTNAC	3 cut(s)	266, 435, 727
MalI	GATC	4 cut(s)	63, 151, 321, 610
MboI	GATC	4 cut(s)	61, 149, 319, 608
MboII	GAAGA	7 cut(s)	23, 26, 165, 307, 541, 923, 950
MfeI	CAATTG	2 cut(s)	486, 1000
MflI	RGATCY	2 cut(s)	61, 149
MhlI	GDGCHC	2 cut(s)	233, 671
MluCI	AATT	7 cut(s)	449, 486, 598, 703, 789, 849, 1000
MlyI	GAGTC	6 cut(s)	158, 167, 197, 248, 418, 548
MmeI	TCCRAC	4 cut(s)	132, 186, 243, 375
MroI	TCCGGA	1 cut(s)	567
MroNI	GCCGGC	1 cut(s)	840
MseI	TTAA	2 cut(s)	603, 698
MspI	CCGG	3 cut(s)	560, 568, 841
MspR9I	CCNGG	1 cut(s)	561
MunI	CAATTG	2 cut(s)	486, 1000
NaeI	GCCGGC	1 cut(s)	842
NciI	CCSGG	1 cut(s)	561
NdeII	GATC	4 cut(s)	61, 149, 319, 608
NgoMIV	GCCGGC	1 cut(s)	840
NlaIV	GGNNCC	4 cut(s)	522, 549, 670, 839
NmeAIII	GCCGAG	3 cut(s)	181, 364, 454
NmuCI	GTSAC	2 cut(s)	266, 727
PaeR7I	CTCGAG	1 cut(s)	323
PciSI	GCTCTTC	1 cut(s)	906
PcsI	WCGNNNNNNNCGW	2 cut(s)	330, 386
PdiI	GCCGGC	1 cut(s)	842
PfeI	GAWTC	2 cut(s)	644, 796
PflFI	GACNNNGTC	1 cut(s)	391
PkrI	GCNGC	1 cut(s)	405
PleI	GAGTC	6 cut(s)	158, 166, 196, 247, 417, 548
PpsI	GAGTC	6 cut(s)	158, 166, 196, 247, 417, 548
PpuMI	RGGWCCY	1 cut(s)	375
Psp124BI	GAGCTC	1 cut(s)	233
Psp5II	RGGWCCY	1 cut(s)	375
PspN4I	GGNNCC	4 cut(s)	522, 549, 670, 839
PspPI	GGNCC	4 cut(s)	375, 637, 722, 1053
PspPPI	RGGWCCY	1 cut(s)	375
PsuI	RGATCY	2 cut(s)	61, 149
PsyI	GACNNNGTC	1 cut(s)	391
RsaI	GTAC	2 cut(s)	350, 884
RsaNI	GTAC	2 cut(s)	349, 883
SacI	GAGCTC	1 cut(s)	233
SapI	GCTCTTC	1 cut(s)	906
SaqAI	TTAA	2 cut(s)	603, 698
SatI	GCNGC	1 cut(s)	404
Sau3AI	GATC	4 cut(s)	61, 149, 319, 608
Sau96I	GGNCC	4 cut(s)	375, 637, 722, 1053
SchI	GAGTC	6 cut(s)	158, 167, 197, 248, 418, 548
ScrFI	CCNGG	1 cut(s)	561
SduI	GDGCHC	2 cut(s)	233, 671
Sfr274I	CTCGAG	1 cut(s)	323
SinI	GGWCC	3 cut(s)	375, 637, 1053
SlaI	CTCGAG	1 cut(s)	323
SmlI	CTYRAG	4 cut(s)	276, 323, 383, 413
SmoI	CTYRAG	4 cut(s)	276, 323, 383, 413
Sse9I	AATT	7 cut(s)	449, 486, 598, 703, 789, 849, 1000
SsiI	CCGC	6 cut(s)	100, 112, 153, 211, 403, 982
SspMI	CTAG	1 cut(s)	53
SstI	GAGCTC	1 cut(s)	233
StyD4I	CCNGG	1 cut(s)	559
TaaI	ACNGT	1 cut(s)	887
TaiI	ACGT	2 cut(s)	395, 963
TaqI	TCGA	6 cut(s)	186, 237, 294, 318, 324, 629
TasI	AATT	7 cut(s)	449, 486, 598, 703, 789, 849, 1000
TauI	GCSGC	1 cut(s)	406
TfiI	GAWTC	2 cut(s)	644, 796
Tru1I	TTAA	2 cut(s)	603, 698
Tru9I	TTAA	2 cut(s)	603, 698
TseFI	GTSAC	2 cut(s)	266, 727
Tsp45I	GTSAC	2 cut(s)	266, 727
TspDTI	ATGAA	3 cut(s)	24, 381, 680
TspGWI	ACGGA	2 cut(s)	661, 1045
Tth111I	GACNNNGTC	1 cut(s)	391
VpaK11BI	GGWCC	3 cut(s)	375, 637, 1053
XapI	RAATTY	2 cut(s)	449, 789
XhoI	CTCGAG	1 cut(s)	323
XspI	CTAG	1 cut(s)	53
ZraI	GACGTC	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.