Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0011397

Physical Location & Seq

Genomic Coordinates Reverse (-)

65774530 .. 65776766

Gene Structure 2237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00129740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGAAAATGAACCACCAAACCCTACCCAAGAAGAAGCCCTAGATTCCGACCCAGCTCTCCAAAAGAAGCACCAATCCATGCTCGACCGCCTCACCCACCGCCACCAATCCCGCCTCGACACCACCCTCACGCGCCGCGCCGCCGCCGACTCCTCCGACCCCTCCCCTTCCTTCGAGTCCACCTCCGCCTTCCTCTCCCGCTTCTCCACCTCCAAGTCCTCCGTCGACTCCCAACTCGCCCAGTGCCGACTCACCGATCCCGCTCACCTCAAACCCCACCTCGACCAAATCTCCGCCTCCATCTCCGACCTCGAGAAGCTCGTCGCCGAGAACTCCTACTTCCTCCCCTCGTACGAAGTCCGATCGTCGCTCAAAACGATCTCCGATCTGAGACAAACCCTAGAGAACCTGAGCGCCGAGTTATTGCCGAAGAAGAAATTCTCTTTCAGAAACAAAGGCGCCAAGAAAACCGAGCCAAATGAGAAGGAGAACGAGAAAGAGCCGGAGAAAATGGAGTTCATAGTTCCGGCGTCGCCGGGTATTTGGAACAAGAAAGAGGAGACCTTAGTGAGGAAGTTTCAGTGCTCGGAAGTCGGAGAATTCACTATTTCGGACCTGGATTCCTGCGAGGTGAGGCTTATGGGGTCTGTGAGGGCTCTATTTGTTCATAGGTTGAGGAATTGTAGGGTTTATACTGGCCCTGTGACCGGTTCGGTTCTGATTGAAGGAGTTGAAGAGAGTGTTTTTGTTATGGCTTCGCATCAGATTCGAATTCACAATGCAAAGAGGTGTGATTTTTATCTGAGAGTGAGAAGCAGACCTATAATTGAGGATAGCTGTGGTGTGAGGTTTGCGCCATACTGTTTGAGGTATAATGGGATTGAGGAAGAGCTTAGGGAGACTAGTCTTGATGAGGAGACGGAAAATTGGGCCAATGTGGATGACTTCCTGTGGCTGAGGGCAGTTCAGTCGCCAAATTGGTCTCTCTTGCCGGAGAATGAGAGAGTTGGTTTGATAGATATTTCGAGTTCACAGGAAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005929 GO:0006457 GO:0006996 GO:0007010 GO:0007017 GO:0007021 GO:0008150 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022607 GO:0032391 GO:0034622 GO:0035869 GO:0042995 GO:0043005 GO:0043226 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044441 GO:0044444 GO:0044463 GO:0044464 GO:0065003 GO:0071840 GO:0097458 GO:0097730 GO:0097731 GO:0097733 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TBCC TBCC_N

Protein Analysis

347

Amino Acids

39.53

Weight (kDa)

5.46

Isoelectric Point (pI)

61.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TBCC_N	PF16752	29 - 145	8.5e-32	Tubulin-specific chaperone C N-terminal domain
TBCC	PF07986	200 - 316	2.1e-38	Tubulin binding cofactor C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39920
fragaria_vesca	FvH4_1g20700 FvH4_1g20700 FvH4_1g20700
malus_domestica	MD01G1031400.v1.1 MD05G1043000.v1.1
prunus_persica	Prupe.6G188100_v2.0.a1
pyrus_communis	pycom01g05900
rosa_chinensis	RchiOBHm_Chr2g0113151
rosa_laevigata	RLG00000018047
rosa_multiflora	Rmu_co8118374.1_g000001 Rmu_co8398113.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129570 Rroxscaffold_2G00129740
rosa_rugosa	Rorug02G0185800
rosa_samantha	Rh2AG240100 Rh2BG254000 Rh2CG244100 Rh2DG248000
rosa_wichuraiana	Rw2G018790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	458
AccBSI	CCGCTC	1 cut(s)	263
AccI	GTMKAC	1 cut(s)	225
AccII	CGCG	2 cut(s)	133, 138
AclWI	GGATC	1 cut(s)	251
AcsI	RAATTY	3 cut(s)	437, 599, 771
AcyI	GRCGYC	2 cut(s)	459, 530
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	2 cut(s)	570, 707
AgeI	ACCGGT	1 cut(s)	707
AgsI	TTSAA	2 cut(s)	725, 734
AhlI	ACTAGT	1 cut(s)	902
AjnI	CCWGG	1 cut(s)	615
AluBI	AGCT	4 cut(s)	56, 319, 837, 892
AluI	AGCT	4 cut(s)	56, 319, 837, 892
Alw21I	GWGCWC	1 cut(s)	587
Alw26I	GTCTC	5 cut(s)	385, 554, 893, 911, 987
AlwI	GGATC	1 cut(s)	251
Ama87I	CYCGRG	1 cut(s)	311
AoxI	GGCC	2 cut(s)	697, 930
ApoI	RAATTY	3 cut(s)	437, 599, 771
AsiGI	ACCGGT	1 cut(s)	707
Asp700I	GAANNNNTTC	1 cut(s)	437
AspLEI	GCGC	5 cut(s)	135, 140, 416, 461, 856
AspS9I	GGNCC	3 cut(s)	613, 698, 930
AsuC2I	CCSGG	1 cut(s)	537
AsuHPI	GGTGA	4 cut(s)	85, 244, 257, 643
AsuII	TTCGAA	1 cut(s)	769
AvaI	CYCGRG	1 cut(s)	311
AvaII	GGWCC	1 cut(s)	613
BanI	GGYRCC	1 cut(s)	458
BanII	GRGCYC	1 cut(s)	658
Bbv12I	GWGCWC	1 cut(s)	587
BbvCI	CCTCAGC	1 cut(s)	956
BccI	CCATC	1 cut(s)	308
BcgI	CGANNNNNNTGC	4 cut(s)	749, 783, 951, 985
BciT130I	CCWGG	1 cut(s)	617
BcnI	CCSGG	1 cut(s)	537
BcoDI	GTCTC	5 cut(s)	385, 554, 893, 911, 987
BcuI	ACTAGT	1 cut(s)	902
BfaI	CTAG	3 cut(s)	41, 401, 903
BfoI	RGCGCY	2 cut(s)	417, 462
BisI	GCNGC	3 cut(s)	136, 141, 144
BlsI	GCNGC	3 cut(s)	137, 142, 145
Bme1390I	CCNGG	2 cut(s)	537, 617
Bme18I	GGWCC	1 cut(s)	613
BmeT110I	CYCGRG	1 cut(s)	311
BmgT120I	GGNCC	3 cut(s)	613, 698, 930
BmiI	GGNNCC	1 cut(s)	460
BmrFI	CCNGG	2 cut(s)	537, 617
BmrI	ACTGGG	1 cut(s)	235
BmsI	GCATC	1 cut(s)	769
BmuI	ACTGGG	1 cut(s)	235
BplI	GAGNNNNNCTC	2 cut(s)	167, 199
Bpu10I	CCTNAGC	3 cut(s)	410, 893, 956
Bpu14I	TTCGAA	1 cut(s)	769
BpuMI	CCSGG	1 cut(s)	537
BsaBI	GATNNNNATC	1 cut(s)	798
BsaHI	GRCGYC	2 cut(s)	459, 530
BsaI	GGTCTC	2 cut(s)	554, 987
BsaWI	WCCGGW	1 cut(s)	707
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	2 cut(s)	570, 707
Bse118I	RCCGGY	1 cut(s)	707
Bse1I	ACTGG	2 cut(s)	241, 700
Bse8I	GATNNNNATC	1 cut(s)	798
BseBI	CCWGG	1 cut(s)	617
BseGI	GGATG	1 cut(s)	946
BseJI	GATNNNNATC	1 cut(s)	798
BseLI	CCNNNNNNNGG	2 cut(s)	570, 707
BseMII	CTCAG	4 cut(s)	380, 401, 794, 947
BseNI	ACTGG	2 cut(s)	241, 700
BseRI	GAGGAG	3 cut(s)	142, 572, 929
BseYI	CCCAGC	1 cut(s)	52
Bsh1236I	CGCG	2 cut(s)	133, 138
Bsh1285I	CGRYCG	2 cut(s)	88, 365
BshFI	GGCC	2 cut(s)	699, 932
BshNI	GGYRCC	1 cut(s)	458
BshTI	ACCGGT	1 cut(s)	707
BsiEI	CGRYCG	2 cut(s)	88, 365
BsiHKAI	GWGCWC	1 cut(s)	587
BsiHKCI	CYCGRG	1 cut(s)	311
BsiSI	CCGG	5 cut(s)	503, 527, 536, 708, 992
BsiWI	CGTACG	1 cut(s)	351
BslI	CCNNNNNNNGG	2 cut(s)	570, 707
BsmAI	GTCTC	5 cut(s)	385, 554, 893, 911, 987
BsmBI	CGTCTC	1 cut(s)	911
BsnI	GGCC	2 cut(s)	699, 932
Bso31I	GGTCTC	2 cut(s)	554, 987
BsoBI	CYCGRG	1 cut(s)	311
Bsp119I	TTCGAA	1 cut(s)	769
Bsp1286I	GDGCHC	2 cut(s)	587, 658
Bsp143I	GATC	4 cut(s)	256, 362, 378, 385
BspANI	GGCC	2 cut(s)	699, 932
BspCNI	CTCAG	4 cut(s)	381, 402, 795, 948
BspFNI	CGCG	2 cut(s)	133, 138
BspLI	GGNNCC	1 cut(s)	460
BspPI	GGATC	1 cut(s)	251
BspQI	GCTCTTC	1 cut(s)	882
BspT104I	TTCGAA	1 cut(s)	769
BspT107I	GGYRCC	1 cut(s)	458
BspTNI	GGTCTC	2 cut(s)	554, 987
BsrBI	CCGCTC	1 cut(s)	263
BsrFI	RCCGGY	1 cut(s)	707
BsrI	ACTGG	2 cut(s)	241, 700
BssAI	RCCGGY	1 cut(s)	707
BssMI	GATC	4 cut(s)	256, 362, 378, 385
BssNI	GRCGYC	2 cut(s)	459, 530
Bst2UI	CCWGG	1 cut(s)	617
Bst4CI	ACNGT	1 cut(s)	863
Bst6I	CTCTTC	2 cut(s)	729, 882
BstACI	GRCGYC	2 cut(s)	459, 530
BstBI	TTCGAA	1 cut(s)	769
BstDEI	CTNAG	6 cut(s)	389, 410, 565, 803, 893, 956
BstENI	CCTNNNNNAGG	1 cut(s)	568
BstF5I	GGATG	1 cut(s)	946
BstFNI	CGCG	2 cut(s)	133, 138
BstH2I	RGCGCY	2 cut(s)	417, 462
BstHHI	GCGC	5 cut(s)	135, 140, 416, 461, 856
BstKTI	GATC	4 cut(s)	259, 365, 381, 388
BstMAI	GTCTC	5 cut(s)	385, 554, 893, 911, 987
BstMBI	GATC	4 cut(s)	256, 362, 378, 385
BstMCI	CGRYCG	2 cut(s)	88, 365
BstNI	CCWGG	1 cut(s)	617
BstSCI	CCNGG	2 cut(s)	535, 615
BstUI	CGCG	2 cut(s)	133, 138
BsuRI	GGCC	2 cut(s)	699, 932
BtsCI	GGATG	1 cut(s)	946
BtsIMutI	CAGTG	2 cut(s)	248, 587
CfoI	GCGC	5 cut(s)	135, 140, 416, 461, 856
Cfr10I	RCCGGY	1 cut(s)	707
Cfr13I	GGNCC	3 cut(s)	613, 698, 930
CseI	GACGC	1 cut(s)	519
Csp6I	GTAC	1 cut(s)	352
CspAI	ACCGGT	1 cut(s)	707
CviAII	CATG	1 cut(s)	79
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	6 cut(s)	389, 410, 565, 803, 893, 956
DinI	GGCGCC	1 cut(s)	460
DpnI	GATC	4 cut(s)	258, 364, 380, 387
DpnII	GATC	4 cut(s)	256, 362, 378, 385
Eam1104I	CTCTTC	2 cut(s)	729, 882
EarI	CTCTTC	2 cut(s)	729, 882
EciI	GGCGGA	2 cut(s)	175, 283
Eco24I	GRGCYC	1 cut(s)	658
Eco31I	GGTCTC	2 cut(s)	554, 987
Eco47I	GGWCC	1 cut(s)	613
Eco88I	CYCGRG	1 cut(s)	311
EcoNI	CCTNNNNNAGG	1 cut(s)	568
EcoRI	GAATTC	2 cut(s)	599, 771
EcoRII	CCWGG	1 cut(s)	615
EcoT38I	GRGCYC	1 cut(s)	658
EgeI	GGCGCC	1 cut(s)	460
EheI	GGCGCC	1 cut(s)	460
Esp3I	CGTCTC	1 cut(s)	911
FaeI	CATG	1 cut(s)	82
FaiI	YATR	9 cut(s)	80, 521, 641, 669, 693, 752, 824, 859, 873
FatI	CATG	1 cut(s)	78
FauI	CCCGC	3 cut(s)	119, 206, 268
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	3 cut(s)	136, 141, 144
FokI	GGATG	1 cut(s)	953
FriOI	GRGCYC	1 cut(s)	658
Fsp4HI	GCNGC	3 cut(s)	136, 141, 144
FspBI	CTAG	3 cut(s)	41, 401, 903
GlaI	GCGC	5 cut(s)	134, 139, 415, 460, 855
GluI	GCNGC	3 cut(s)	136, 141, 144
GsaI	CCCAGC	1 cut(s)	56
HaeII	RGCGCY	2 cut(s)	417, 462
HaeIII	GGCC	2 cut(s)	699, 932
HapII	CCGG	5 cut(s)	503, 527, 536, 708, 992
HgaI	GACGC	1 cut(s)	519
HhaI	GCGC	5 cut(s)	135, 140, 416, 461, 856
Hin1I	GRCGYC	2 cut(s)	459, 530
Hin1II	CATG	1 cut(s)	82
Hin6I	GCGC	5 cut(s)	133, 138, 414, 459, 854
HinP1I	GCGC	5 cut(s)	133, 138, 414, 459, 854
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	7 cut(s)	44, 149, 176, 227, 249, 620, 766
HpaII	CCGG	5 cut(s)	503, 527, 536, 708, 992
HphI	GGTGA	4 cut(s)	85, 244, 257, 643
Hpy166II	GTNNAC	3 cut(s)	180, 226, 1031
Hpy188III	TCNNGA	2 cut(s)	313, 908
Hpy8I	GTNNAC	3 cut(s)	180, 226, 1031
Hpy99I	CGWCG	4 cut(s)	227, 326, 370, 535
HpyAV	CCTTC	5 cut(s)	177, 181, 199, 478, 719
HpyCH4III	ACNGT	1 cut(s)	863
HpyCH4V	TGCA	1 cut(s)	782
HpyF3I	CTNAG	6 cut(s)	389, 410, 565, 803, 893, 956
Hsp92I	GRCGYC	2 cut(s)	459, 530
Hsp92II	CATG	1 cut(s)	82
HspAI	GCGC	5 cut(s)	133, 138, 414, 459, 854
KasI	GGCGCC	1 cut(s)	458
Kzo9I	GATC	4 cut(s)	256, 362, 378, 385
LguI	GCTCTTC	1 cut(s)	882
LweI	GCATC	1 cut(s)	769
MaeI	CTAG	3 cut(s)	41, 401, 903
MaeIII	GTNAC	1 cut(s)	703
MalI	GATC	4 cut(s)	258, 364, 380, 387
MbiI	CCGCTC	1 cut(s)	263
MboI	GATC	4 cut(s)	256, 362, 378, 385
MboII	GAAGA	5 cut(s)	44, 442, 445, 746, 899
MhlI	GDGCHC	2 cut(s)	587, 658
MluCI	AATT	7 cut(s)	437, 599, 679, 771, 825, 925, 976
Mly113I	GGCGCC	1 cut(s)	459
MlyI	GAGTC	4 cut(s)	143, 185, 221, 243
MmeI	TCCRAC	4 cut(s)	72, 180, 330, 574
MroXI	GAANNNNTTC	1 cut(s)	437
MseI	TTAA	1 cut(s)	1042
MspI	CCGG	5 cut(s)	503, 527, 536, 708, 992
MspR9I	CCNGG	2 cut(s)	537, 617
MteI	GCGCNGCGC	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	617
MvnI	CGCG	2 cut(s)	133, 138
NarI	GGCGCC	1 cut(s)	459
NciI	CCSGG	1 cut(s)	537
NdeII	GATC	4 cut(s)	256, 362, 378, 385
NlaIII	CATG	1 cut(s)	82
NlaIV	GGNNCC	1 cut(s)	460
NmeAIII	GCCGAG	2 cut(s)	352, 442
NmuCI	GTSAC	1 cut(s)	703
NspV	TTCGAA	1 cut(s)	769
PaeR7I	CTCGAG	1 cut(s)	311
PciSI	GCTCTTC	1 cut(s)	882
PcsI	WCGNNNNNNNCGW	2 cut(s)	318, 374
PdmI	GAANNNNTTC	1 cut(s)	437
PfeI	GAWTC	3 cut(s)	44, 620, 766
Pfl23II	CGTACG	1 cut(s)	351
PinAI	ACCGGT	1 cut(s)	707
PkrI	GCNGC	3 cut(s)	137, 142, 145
Ple19I	CGATCG	1 cut(s)	365
PleI	GAGTC	4 cut(s)	143, 184, 221, 243
PluTI	GGCGCC	1 cut(s)	462
PpsI	GAGTC	4 cut(s)	143, 184, 221, 243
Psp6I	CCWGG	1 cut(s)	615
PspFI	CCCAGC	1 cut(s)	52
PspGI	CCWGG	1 cut(s)	615
PspLI	CGTACG	1 cut(s)	351
PspN4I	GGNNCC	1 cut(s)	460
PspPI	GGNCC	3 cut(s)	613, 698, 930
PvuI	CGATCG	1 cut(s)	365
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
SalI	GTCGAC	1 cut(s)	224
SapI	GCTCTTC	1 cut(s)	882
SaqAI	TTAA	1 cut(s)	1042
SatI	GCNGC	3 cut(s)	136, 141, 144
Sau3AI	GATC	4 cut(s)	256, 362, 378, 385
Sau96I	GGNCC	3 cut(s)	613, 698, 930
SchI	GAGTC	4 cut(s)	143, 185, 221, 243
ScrFI	CCNGG	2 cut(s)	537, 617
SduI	GDGCHC	2 cut(s)	587, 658
SfaNI	GCATC	1 cut(s)	769
SfoI	GGCGCC	1 cut(s)	460
Sfr274I	CTCGAG	1 cut(s)	311
SfuI	TTCGAA	1 cut(s)	769
SinI	GGWCC	1 cut(s)	613
SlaI	CTCGAG	1 cut(s)	311
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
SpeI	ACTAGT	1 cut(s)	902
Sse9I	AATT	7 cut(s)	437, 599, 679, 771, 825, 925, 976
SspDI	GGCGCC	1 cut(s)	458
SspMI	CTAG	3 cut(s)	41, 401, 903
StyD4I	CCNGG	2 cut(s)	535, 615
TaaI	ACNGT	1 cut(s)	863
TaqI	TCGA	8 cut(s)	84, 117, 174, 225, 282, 312, 769, 1025
TasI	AATT	7 cut(s)	437, 599, 679, 771, 825, 925, 976
TauI	GCSGC	3 cut(s)	138, 143, 146
TfiI	GAWTC	3 cut(s)	44, 620, 766
Tru1I	TTAA	1 cut(s)	1042
Tru9I	TTAA	1 cut(s)	1042
TscAI	CASTG	2 cut(s)	248, 587
TseFI	GTSAC	1 cut(s)	703
Tsp45I	GTSAC	1 cut(s)	703
TspDTI	ATGAA	3 cut(s)	24, 508, 656
TspGWI	ACGGA	2 cut(s)	211, 935
TspRI	CASTG	2 cut(s)	248, 587
VpaK11BI	GGWCC	1 cut(s)	613
XagI	CCTNNNNNAGG	1 cut(s)	568
XapI	RAATTY	3 cut(s)	437, 599, 771
XhoI	CTCGAG	1 cut(s)	311
XmiI	GTMKAC	1 cut(s)	225
XmnI	GAANNNNTTC	1 cut(s)	437
XspI	CTAG	3 cut(s)	41, 401, 903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.