Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0011397

Physical Location & Seq

Genomic Coordinates Reverse (-)

12854941 .. 12860397

Gene Structure 5457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g20700.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGAAAATGAATCACCTCTCTCACCAAACCCTACCCAAGAATCCCTAGATTCCGACCCCTCCCTCCAAAAGAAGCACCAATCCATGCTCGACCGCCTCACCCACCGCCACCAATCCCGCCTCGACACCTCCCTCACGCGCCGCTCCGATTCCGACCCCTCCCCTTCCTTCGAGTCCACCTCCGCCTTCCTCTCCCGCTTCTCCGCCTCCAAATCCTCCGTCGATTCCCAGCTCTCCCTCTCCCGCCGCCTCCCCGCCGACGACCTCAAGCCCCACCTCGACCAAATCTCCGCCTCCATCTCCGACCTCGAGAAGCTCGTCGCCGAAAACTCCTACTTCCTCCCCTCCTACGAACTCCGATCGTCGCTCAAAACGATCTCCGATCTGCGACAAACCCTAGAAAATCTCAGCGCCGAGCTTCTGCCGAAGAAGAAATTCTCTTTCCGAAACAAATCAAAGAGCGAGCCGAAACCGAAGGAGAAGGAGCCGGAGAAGGAGCCGGAGAAGCCGGAGTTCAAAGTTCCGGCGTCGCCGGGGATTTGGAGCAAGAAAGGGGAGACATTAGTGAGGAAGTTTTCGGGGTCAGAAATCGGAGAGTTTACGATTTCGGACCTGGATTCATGCGAGGTGAGGCTGATGGGGTCTGTGAGGGCCCTATTTGTGCATAGGTTGAGGAATTGTAGGGTTTATACTGGGCCGGTGACCGGTTCGGTACTGATTGAAGGAGTTGAGGAGTGTGTTTTTGTTATGGCTTCGCATCAGATTCGTATTCATAATGCGAAGAAGTGTGATTTTTATCTGAGAGTGAGGAGCAGGCCTATAATTGAGGACAGCTGTGGGGTGAGGTTTGCGCCATACTGTTTGAGGTATGATGGGATTGAGGAGGAGCTTAGGGAGACTAGTCTTGATGAGGAGACGGAGAATTGGGGTAATGTGGATGACTTTTTGTGGTTGAGGGCAGTTCAGTCGCCGAATTGGTCTGTCTTGCCGGAGAATGAGAGAGTTGGTTTGGTACATTTTTCAAGCTTGGAGGAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005929 GO:0006457 GO:0006996 GO:0007010 GO:0007017 GO:0007021 GO:0008150 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022607 GO:0032391 GO:0034622 GO:0035869 GO:0042995 GO:0043005 GO:0043226 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044441 GO:0044444 GO:0044463 GO:0044464 GO:0065003 GO:0071840 GO:0097458 GO:0097730 GO:0097731 GO:0097733 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TBCC TBCC_N

Protein Analysis

347

Amino Acids

39.37

Weight (kDa)

5.76

Isoelectric Point (pI)

66.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TBCC_N	PF16752	31 - 144	3.6e-30	Tubulin-specific chaperone C N-terminal domain
TBCC	PF07986	199 - 315	9.7e-39	Tubulin binding cofactor C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011397)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39920
fragaria_vesca	FvH4_1g20700 FvH4_1g20700 FvH4_1g20700
malus_domestica	MD01G1031400.v1.1 MD05G1043000.v1.1
prunus_persica	Prupe.6G188100_v2.0.a1
pyrus_communis	pycom01g05900
rosa_chinensis	RchiOBHm_Chr2g0113151
rosa_laevigata	RLG00000018047
rosa_multiflora	Rmu_co8118374.1_g000001 Rmu_co8398113.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129570 Rroxscaffold_2G00129740
rosa_rugosa	Rorug02G0185800
rosa_samantha	Rh2AG240100 Rh2BG254000 Rh2CG244100 Rh2DG248000
rosa_wichuraiana	Rw2G018790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	144
AccII	CGCG	1 cut(s)	139
AcsI	RAATTY	1 cut(s)	434
AcyI	GRCGYC	1 cut(s)	527
AfaI	GTAC	2 cut(s)	714, 1014
AfiI	CCNNNNNNNGG	1 cut(s)	704
AgeI	ACCGGT	1 cut(s)	704
AgsI	TTSAA	3 cut(s)	517, 722, 1023
AhlI	ACTAGT	1 cut(s)	899
AjnI	CCWGG	1 cut(s)	612
AluBI	AGCT	6 cut(s)	232, 316, 418, 834, 889, 1026
AluI	AGCT	6 cut(s)	232, 316, 418, 834, 889, 1026
Alw26I	GTCTC	3 cut(s)	551, 890, 908
Ama87I	CYCGRG	1 cut(s)	308
AoxI	GGCC	3 cut(s)	651, 695, 815
ApaI	GGGCCC	1 cut(s)	655
ApoI	RAATTY	1 cut(s)	434
ArsI	GACNNNNNNTTYG	2 cut(s)	204, 236
AsiGI	ACCGGT	1 cut(s)	704
Asp700I	GAANNNNTTC	1 cut(s)	434
AspLEI	GCGC	3 cut(s)	141, 413, 853
AspS9I	GGNCC	4 cut(s)	610, 651, 652, 695
AsuC2I	CCSGG	1 cut(s)	534
AsuHPI	GGTGA	6 cut(s)	6, 15, 91, 640, 712, 853
AvaI	CYCGRG	1 cut(s)	308
AvaII	GGWCC	1 cut(s)	610
BaeGI	GKGCMC	1 cut(s)	655
BanII	GRGCYC	1 cut(s)	655
BccI	CCATC	3 cut(s)	305, 631, 866
BcgI	CGANNNNNNTGC	4 cut(s)	746, 780, 948, 982
BciT130I	CCWGG	1 cut(s)	614
BcnI	CCSGG	1 cut(s)	534
BcoDI	GTCTC	3 cut(s)	551, 890, 908
BcuI	ACTAGT	1 cut(s)	899
BfaI	CTAG	3 cut(s)	47, 398, 900
BfoI	RGCGCY	1 cut(s)	414
BisI	GCNGC	2 cut(s)	142, 247
BlsI	GCNGC	2 cut(s)	143, 248
Bme1390I	CCNGG	2 cut(s)	534, 614
Bme18I	GGWCC	1 cut(s)	610
BmeT110I	CYCGRG	1 cut(s)	308
BmgT120I	GGNCC	4 cut(s)	610, 651, 652, 695
BmiI	GGNNCC	3 cut(s)	486, 498, 653
BmrFI	CCNGG	2 cut(s)	534, 614
BmrI	ACTGGG	1 cut(s)	702
BmsI	GCATC	1 cut(s)	766
BmuI	ACTGGG	1 cut(s)	702
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
Bpu10I	CCTNAGC	1 cut(s)	890
BpuEI	CTTGAG	1 cut(s)	251
BpuMI	CCSGG	1 cut(s)	534
BsaBI	GATNNNNATC	1 cut(s)	795
BsaHI	GRCGYC	1 cut(s)	527
BsaJI	CCNNGG	1 cut(s)	533
BsaWI	WCCGGW	1 cut(s)	704
BsaXI	ACNNNNNCTCC	2 cut(s)	272, 302
Bsc4I	CCNNNNNNNGG	1 cut(s)	704
Bse118I	RCCGGY	2 cut(s)	697, 704
Bse1I	ACTGG	1 cut(s)	697
Bse8I	GATNNNNATC	1 cut(s)	795
BseBI	CCWGG	1 cut(s)	614
BseDI	CCNNGG	1 cut(s)	533
BseGI	GGATG	1 cut(s)	943
BseJI	GATNNNNATC	1 cut(s)	795
BseLI	CCNNNNNNNGG	1 cut(s)	704
BseMII	CTCAG	2 cut(s)	421, 791
BseNI	ACTGG	1 cut(s)	697
BseRI	GAGGAG	5 cut(s)	746, 823, 896, 899, 926
BseSI	GKGCMC	1 cut(s)	655
BseYI	CCCAGC	1 cut(s)	228
Bsh1236I	CGCG	1 cut(s)	139
Bsh1285I	CGRYCG	2 cut(s)	94, 362
BshFI	GGCC	3 cut(s)	653, 697, 817
BshTI	ACCGGT	1 cut(s)	704
BsiEI	CGRYCG	2 cut(s)	94, 362
BsiHKCI	CYCGRG	1 cut(s)	308
BsiSI	CCGG	8 cut(s)	488, 500, 509, 524, 533, 698, 705, 989
BslI	CCNNNNNNNGG	1 cut(s)	704
BsmAI	GTCTC	3 cut(s)	551, 890, 908
BsmBI	CGTCTC	1 cut(s)	908
BsnI	GGCC	3 cut(s)	653, 697, 817
BsoBI	CYCGRG	1 cut(s)	308
Bsp120I	GGGCCC	1 cut(s)	651
Bsp1286I	GDGCHC	1 cut(s)	655
Bsp143I	GATC	3 cut(s)	359, 375, 382
BspANI	GGCC	3 cut(s)	653, 697, 817
BspCNI	CTCAG	2 cut(s)	420, 792
BspFNI	CGCG	1 cut(s)	139
BspLI	GGNNCC	3 cut(s)	486, 498, 653
BsrBI	CCGCTC	1 cut(s)	144
BsrFI	RCCGGY	2 cut(s)	697, 704
BsrI	ACTGG	1 cut(s)	697
BssAI	RCCGGY	2 cut(s)	697, 704
BssECI	CCNNGG	1 cut(s)	533
BssMI	GATC	3 cut(s)	359, 375, 382
BssNI	GRCGYC	1 cut(s)	527
Bst2UI	CCWGG	1 cut(s)	614
Bst4CI	ACNGT	1 cut(s)	860
BstACI	GRCGYC	1 cut(s)	527
BstC8I	GCNNGC	2 cut(s)	464, 815
BstDEI	CTNAG	3 cut(s)	407, 800, 890
BstEII	GGTNACC	1 cut(s)	700
BstF5I	GGATG	1 cut(s)	943
BstFNI	CGCG	1 cut(s)	139
BstH2I	RGCGCY	1 cut(s)	414
BstHHI	GCGC	3 cut(s)	141, 413, 853
BstKTI	GATC	3 cut(s)	362, 378, 385
BstMAI	GTCTC	3 cut(s)	551, 890, 908
BstMBI	GATC	3 cut(s)	359, 375, 382
BstMCI	CGRYCG	2 cut(s)	94, 362
BstMWI	GCNNNNNNNGC	1 cut(s)	505
BstNI	CCWGG	1 cut(s)	614
BstPI	GGTNACC	1 cut(s)	700
BstSCI	CCNGG	2 cut(s)	532, 612
BstSLI	GKGCMC	1 cut(s)	655
BstUI	CGCG	1 cut(s)	139
BsuRI	GGCC	3 cut(s)	653, 697, 817
BtsCI	GGATG	1 cut(s)	943
Cac8I	GCNNGC	2 cut(s)	464, 815
CfoI	GCGC	3 cut(s)	141, 413, 853
Cfr10I	RCCGGY	2 cut(s)	697, 704
Cfr13I	GGNCC	4 cut(s)	610, 651, 652, 695
CseI	GACGC	1 cut(s)	516
Csp6I	GTAC	2 cut(s)	713, 1013
CspAI	ACCGGT	1 cut(s)	704
CviAII	CATG	2 cut(s)	85, 621
CviQI	GTAC	2 cut(s)	713, 1013
DdeI	CTNAG	3 cut(s)	407, 800, 890
DpnI	GATC	3 cut(s)	361, 377, 384
DpnII	GATC	3 cut(s)	359, 375, 382
EciI	GGCGGA	3 cut(s)	172, 193, 280
Eco147I	AGGCCT	1 cut(s)	817
Eco24I	GRGCYC	1 cut(s)	655
Eco47I	GGWCC	1 cut(s)	610
Eco88I	CYCGRG	1 cut(s)	308
Eco91I	GGTNACC	1 cut(s)	700
EcoO109I	RGGNCCY	2 cut(s)	651, 652
EcoO65I	GGTNACC	1 cut(s)	700
EcoRII	CCWGG	1 cut(s)	612
EcoT38I	GRGCYC	1 cut(s)	655
Esp3I	CGTCTC	1 cut(s)	908
FaeI	CATG	2 cut(s)	88, 624
FaiI	YATR	9 cut(s)	86, 622, 666, 690, 749, 774, 821, 856, 870
FatI	CATG	2 cut(s)	84, 620
FauI	CCCGC	4 cut(s)	125, 203, 251, 262
Fnu4HI	GCNGC	2 cut(s)	142, 247
FokI	GGATG	1 cut(s)	950
FriOI	GRGCYC	1 cut(s)	655
Fsp4HI	GCNGC	2 cut(s)	142, 247
FspBI	CTAG	3 cut(s)	47, 398, 900
GlaI	GCGC	3 cut(s)	140, 412, 852
GluI	GCNGC	2 cut(s)	142, 247
GsaI	CCCAGC	1 cut(s)	232
HaeII	RGCGCY	1 cut(s)	414
HaeIII	GGCC	3 cut(s)	653, 697, 817
HapII	CCGG	8 cut(s)	488, 500, 509, 524, 533, 698, 705, 989
HgaI	GACGC	1 cut(s)	516
HhaI	GCGC	3 cut(s)	141, 413, 853
Hin1I	GRCGYC	1 cut(s)	527
Hin1II	CATG	2 cut(s)	88, 624
Hin6I	GCGC	3 cut(s)	139, 411, 851
HinP1I	GCGC	3 cut(s)	139, 411, 851
HindIII	AAGCTT	1 cut(s)	1024
HinfI	GANTC	8 cut(s)	11, 41, 50, 149, 173, 224, 617, 763
HpaII	CCGG	8 cut(s)	488, 500, 509, 524, 533, 698, 705, 989
HphI	GGTGA	6 cut(s)	6, 15, 91, 640, 712, 853
Hpy166II	GTNNAC	2 cut(s)	177, 600
Hpy188III	TCNNGA	2 cut(s)	310, 905
Hpy8I	GTNNAC	2 cut(s)	177, 600
Hpy99I	CGWCG	5 cut(s)	224, 263, 323, 367, 532
HpyAV	CCTTC	7 cut(s)	174, 178, 196, 469, 475, 487, 716
HpyCH4III	ACNGT	1 cut(s)	860
HpyCH4V	TGCA	1 cut(s)	664
HpyF10VI	GCNNNNNNNGC	1 cut(s)	505
HpyF3I	CTNAG	3 cut(s)	407, 800, 890
Hsp92I	GRCGYC	1 cut(s)	527
Hsp92II	CATG	2 cut(s)	88, 624
HspAI	GCGC	3 cut(s)	139, 411, 851
Kzo9I	GATC	3 cut(s)	359, 375, 382
LmnI	GCTCC	6 cut(s)	149, 484, 496, 543, 810, 886
LweI	GCATC	1 cut(s)	766
MaeI	CTAG	3 cut(s)	47, 398, 900
MaeIII	GTNAC	1 cut(s)	700
MalI	GATC	3 cut(s)	361, 377, 384
MbiI	CCGCTC	1 cut(s)	144
MboI	GATC	3 cut(s)	359, 375, 382
MboII	GAAGA	3 cut(s)	439, 442, 793
MhlI	GDGCHC	1 cut(s)	655
MluCI	AATT	5 cut(s)	434, 676, 822, 922, 973
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	3 cut(s)	78, 177, 327
MroXI	GAANNNNTTC	1 cut(s)	434
MspA1I	CMGCKG	1 cut(s)	834
MspI	CCGG	8 cut(s)	488, 500, 509, 524, 533, 698, 705, 989
MspR9I	CCNGG	2 cut(s)	534, 614
MvaI	CCWGG	1 cut(s)	614
MvnI	CGCG	1 cut(s)	139
MwoI	GCNNNNNNNGC	1 cut(s)	505
NciI	CCSGG	1 cut(s)	534
NdeII	GATC	3 cut(s)	359, 375, 382
NlaIII	CATG	2 cut(s)	88, 624
NlaIV	GGNNCC	3 cut(s)	486, 498, 653
NmeAIII	GCCGAG	1 cut(s)	439
NmuCI	GTSAC	1 cut(s)	700
PaeR7I	CTCGAG	1 cut(s)	308
PceI	AGGCCT	1 cut(s)	817
PcsI	WCGNNNNNNNCGW	2 cut(s)	315, 371
PdmI	GAANNNNTTC	1 cut(s)	434
PfeI	GAWTC	7 cut(s)	11, 41, 50, 149, 224, 617, 763
PinAI	ACCGGT	1 cut(s)	704
PkrI	GCNGC	2 cut(s)	143, 248
Ple19I	CGATCG	1 cut(s)	362
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
Psp6I	CCWGG	1 cut(s)	612
PspEI	GGTNACC	1 cut(s)	700
PspFI	CCCAGC	1 cut(s)	228
PspGI	CCWGG	1 cut(s)	612
PspN4I	GGNNCC	3 cut(s)	486, 498, 653
PspOMI	GGGCCC	1 cut(s)	651
PspPI	GGNCC	4 cut(s)	610, 651, 652, 695
PvuI	CGATCG	1 cut(s)	362
PvuII	CAGCTG	1 cut(s)	834
RsaI	GTAC	2 cut(s)	714, 1014
RsaNI	GTAC	2 cut(s)	713, 1013
SatI	GCNGC	2 cut(s)	142, 247
Sau3AI	GATC	3 cut(s)	359, 375, 382
Sau96I	GGNCC	4 cut(s)	610, 651, 652, 695
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	2 cut(s)	534, 614
SduI	GDGCHC	1 cut(s)	655
SfaNI	GCATC	1 cut(s)	766
Sfr274I	CTCGAG	1 cut(s)	308
SinI	GGWCC	1 cut(s)	610
SlaI	CTCGAG	1 cut(s)	308
SmlI	CTYRAG	2 cut(s)	266, 308
SmoI	CTYRAG	2 cut(s)	266, 308
SpeI	ACTAGT	1 cut(s)	899
Sse9I	AATT	5 cut(s)	434, 676, 822, 922, 973
SseBI	AGGCCT	1 cut(s)	817
SspMI	CTAG	3 cut(s)	47, 398, 900
StuI	AGGCCT	1 cut(s)	817
StyD4I	CCNGG	2 cut(s)	532, 612
TaaI	ACNGT	1 cut(s)	860
TaqI	TCGA	6 cut(s)	90, 123, 171, 222, 279, 309
TasI	AATT	5 cut(s)	434, 676, 822, 922, 973
TauI	GCSGC	2 cut(s)	144, 249
TfiI	GAWTC	7 cut(s)	11, 41, 50, 149, 224, 617, 763
TseFI	GTSAC	1 cut(s)	700
Tsp45I	GTSAC	1 cut(s)	700
TspDTI	ATGAA	3 cut(s)	24, 609, 761
TspGWI	ACGGA	2 cut(s)	208, 932
VpaK11BI	GGWCC	1 cut(s)	610
XapI	RAATTY	1 cut(s)	434
XhoI	CTCGAG	1 cut(s)	308
XmnI	GAANNNNTTC	1 cut(s)	434
XspI	CTAG	3 cut(s)	47, 398, 900

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.