Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007382

Physical Location & Seq

Genomic Coordinates Reverse (-)

18536538 .. 18538506

Gene Structure 1969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G39970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCGGTTTCTTGCAACCACTCTGCGATTCTCTTCTCTCCATCATCCACCGCTGGTTCCTCCTCCGTTACTTCTTCCTCGTCGCTCATCGGCTTTCCTCGTTTCCAAACGCTGCGTTTCAAATCAAGAAGCGTTTATTCGAAATCTAGAGTTTCTTCTCCTGTCTCGGCATTGCCTTTACGTTCTCTAGAAGCTCTGATTTTCGATTGCGACGGCGTGATTCTCGAATCCGAGAATCTACACCGTCAAGCTTACAACGATGCTTTCTCGCATTTCGATGTTCGATGTCCTCCTTCTTCCTCTGAGTCTCTCGATTGGAGCCTCGAGTTCTACGATAAGTTTCAGAATCTAGTCGGAGGTGGGAAACCGAAAATGCGTTGGTATTTCAAAGAAAATGGATGGCCAACTTCCACCATTTTTGACTCTCCTCCTCAGAATGACGATGATCGAGCCAAGTTAATCGATACTCTTCAGGATTGGAAAACTGAGAGGTATAAAGAAATCATAAAATCAGGAAGTGTAGAACCAAGACCTGGTGTAATAAGACTAATGGATGAAGCAAAAGCTGCTGGGAAAAAACTAGCTGTTTGTTCTGCAGCTACAAAGAGTTCAGTAATCTTATGTCTCGAGAATCTAATCGATATCGAGCGGTTCCAAGGACTTGATTGCTTCCTTGCAGGGGATGATGTTAAGGAGAAAAAACCCGATCCTTCGATATATATTACAGCTGCCGAGAAGCTAGGTGTTTCAGTGAAAGACTGTTTGGTCGTAGAGGACAGTGTGATTGGCCTGCAGGCTGCTACAAAAGCAGGGATGTCATGTGTGATCACGTACACTTCTTCAACCTCTGATCAGAATTTCAATGATGCGATTGCCGTATACCCTGATCTCAGCAATGTGAAATTGAAGGACTTGGAAACTCTGCTTCAAACAATAGTCACTGCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

316

Amino Acids

34.65

Weight (kDa)

5.4

Isoelectric Point (pI)

49.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	64 - 271	1.8e-23	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	67 - 275	1.2e-20	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39970
fragaria_vesca	FvH4_1g20570 FvH4_1g20570 FvH4_1g20570 FvH4_1g20570 FvH4_1g20570 FvH4_6g52570 FvH4_6g52570
malus_domestica	MD15G1322100.v1.1
prunus_persica	Prupe.6G190700_v2.0.a1 Prupe.6G190700_v2.0.a1
pyrus_communis	pycom15g28300
rosa_chinensis	RchiOBHm_Chr2g0112791
rosa_laevigata	RLG00000018010
rosa_multiflora	Rmu_co8125272.1_g000001 Rmu_sc0001708.1_g000020 Rmu_sc0002351.1_g000008
rosa_roxburghii	Rroxscaffold_2G00131140
rosa_rugosa	Rorug02G0182700
rosa_samantha	Rh2AG237400 Rh2BG250100 Rh2CG241300 Rh2DG244800
rosa_wichuraiana	Rw2G018360 Rw2G018550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	764
AccB7I	CCANNNNNTGG	1 cut(s)	533
AccBSI	CCGCTC	1 cut(s)	649
AccI	GTMKAC	1 cut(s)	879
AciI	CCGC	3 cut(s)	5, 51, 649
AclWI	GGATC	1 cut(s)	701
AcoI	YGGCCR	1 cut(s)	401
AcsI	RAATTY	1 cut(s)	856
AcuI	CTGAAG	1 cut(s)	455
AfaI	GTAC	1 cut(s)	833
AfiI	CCNNNNNNNGG	2 cut(s)	533, 679
AgsI	TTSAA	6 cut(s)	121, 388, 843, 862, 907, 929
AjnI	CCWGG	1 cut(s)	532
AjuI	GAANNNNNNNTTGG	2 cut(s)	746, 778
AluBI	AGCT	8 cut(s)	194, 251, 566, 584, 599, 728, 739, 947
AluI	AGCT	8 cut(s)	194, 251, 566, 584, 599, 728, 739, 947
Alw26I	GTCTC	3 cut(s)	169, 312, 629
AlwI	GGATC	1 cut(s)	701
Ama87I	CYCGRG	2 cut(s)	323, 626
AoxI	GGCC	2 cut(s)	401, 787
ApeKI	GCWGC	6 cut(s)	112, 566, 596, 728, 797, 944
ApoI	RAATTY	1 cut(s)	856
AsuII	TTCGAA	1 cut(s)	140
AvaI	CYCGRG	2 cut(s)	323, 626
BalI	TGGCCA	1 cut(s)	403
BbvI	GCAGC	5 cut(s)	99, 553, 608, 715, 784
BccI	CCATC	2 cut(s)	49, 393
BceAI	ACGGC	2 cut(s)	229, 860
BciT130I	CCWGG	1 cut(s)	534
BclI	TGATCA	2 cut(s)	825, 850
BcoDI	GTCTC	3 cut(s)	169, 312, 629
BfaI	CTAG	5 cut(s)	147, 188, 350, 581, 740
BfmI	CTRYAG	3 cut(s)	594, 791, 942
BisI	GCNGC	6 cut(s)	113, 567, 597, 729, 798, 945
BlsI	GCNGC	6 cut(s)	114, 568, 598, 730, 799, 946
Bme1390I	CCNGG	1 cut(s)	534
BmeT110I	CYCGRG	2 cut(s)	323, 626
BmiI	GGNNCC	3 cut(s)	58, 320, 653
BmrFI	CCNGG	1 cut(s)	534
BmsI	GCATC	2 cut(s)	250, 856
Bpu14I	TTCGAA	1 cut(s)	140
Bsa29I	ATCGAT	2 cut(s)	462, 639
BsaAI	YACGTR	1 cut(s)	831
BsaJI	CCNNGG	1 cut(s)	655
Bsc4I	CCNNNNNNNGG	2 cut(s)	533, 679
Bse3DI	GCAATG	2 cut(s)	170, 901
BseBI	CCWGG	1 cut(s)	534
BseCI	ATCGAT	2 cut(s)	462, 639
BseDI	CCNNGG	1 cut(s)	655
BseGI	GGATG	5 cut(s)	44, 404, 559, 688, 819
BseLI	CCNNNNNNNGG	2 cut(s)	533, 679
BseMI	GCAATG	2 cut(s)	170, 901
BseMII	CTCAG	4 cut(s)	294, 446, 477, 904
BseRI	GAGGAG	3 cut(s)	52, 417, 420
BseXI	GCAGC	5 cut(s)	99, 553, 608, 715, 784
BseYI	CCCAGC	1 cut(s)	569
BshFI	GGCC	2 cut(s)	403, 789
BshVI	ATCGAT	2 cut(s)	462, 639
BsiHKCI	CYCGRG	2 cut(s)	323, 626
BslI	CCNNNNNNNGG	2 cut(s)	533, 679
BsmAI	GTCTC	3 cut(s)	169, 312, 629
BsnI	GGCC	2 cut(s)	403, 789
BsoBI	CYCGRG	2 cut(s)	323, 626
Bsp119I	TTCGAA	1 cut(s)	140
Bsp143I	GATC	5 cut(s)	445, 706, 825, 850, 886
BspACI	CCGC	3 cut(s)	5, 51, 649
BspANI	GGCC	2 cut(s)	403, 789
BspCNI	CTCAG	4 cut(s)	295, 445, 478, 903
BspDI	ATCGAT	2 cut(s)	462, 639
BspLI	GGNNCC	3 cut(s)	58, 320, 653
BspMAI	CTGCAG	3 cut(s)	598, 795, 946
BspPI	GGATC	1 cut(s)	701
BspT104I	TTCGAA	1 cut(s)	140
BsrBI	CCGCTC	1 cut(s)	649
BsrDI	GCAATG	2 cut(s)	170, 901
BssECI	CCNNGG	1 cut(s)	655
BssMI	GATC	5 cut(s)	445, 706, 825, 850, 886
BssNAI	GTATAC	1 cut(s)	880
BssT1I	CCWWGG	1 cut(s)	655
Bst1107I	GTATAC	1 cut(s)	880
Bst2UI	CCWGG	1 cut(s)	534
Bst4CI	ACNGT	3 cut(s)	245, 761, 779
Bst6I	CTCTTC	2 cut(s)	38, 474
BstAPI	GCANNNNNTGC	1 cut(s)	566
BstBAI	YACGTR	1 cut(s)	831
BstBI	TTCGAA	1 cut(s)	140
BstC8I	GCNNGC	2 cut(s)	791, 795
BstDEI	CTNAG	4 cut(s)	303, 432, 486, 890
BstF5I	GGATG	5 cut(s)	44, 404, 559, 688, 819
BstKTI	GATC	5 cut(s)	448, 709, 828, 853, 889
BstMAI	GTCTC	3 cut(s)	169, 312, 629
BstMBI	GATC	5 cut(s)	445, 706, 825, 850, 886
BstMWI	GCNNNNNNNGC	2 cut(s)	566, 806
BstNI	CCWGG	1 cut(s)	534
BstSCI	CCNGG	1 cut(s)	532
BstSFI	CTRYAG	3 cut(s)	594, 791, 942
BstV1I	GCAGC	5 cut(s)	99, 553, 608, 715, 784
BstZ17I	GTATAC	1 cut(s)	880
Bsu15I	ATCGAT	2 cut(s)	462, 639
BsuRI	GGCC	2 cut(s)	403, 789
BsuTUI	ATCGAT	2 cut(s)	462, 639
BtsCI	GGATG	5 cut(s)	44, 404, 559, 688, 819
BtsI	GCAGTG	1 cut(s)	939
BtsIMutI	CAGTG	3 cut(s)	756, 784, 939
Cac8I	GCNNGC	2 cut(s)	791, 795
ClaI	ATCGAT	2 cut(s)	462, 639
CsiI	ACCWGGT	1 cut(s)	532
Csp6I	GTAC	1 cut(s)	832
CspCI	CAANNNNNGTGG	2 cut(s)	400, 435
CviAII	CATG	1 cut(s)	819
CviQI	GTAC	1 cut(s)	832
DdeI	CTNAG	4 cut(s)	303, 432, 486, 890
DpnI	GATC	5 cut(s)	447, 708, 827, 852, 888
DpnII	GATC	5 cut(s)	445, 706, 825, 850, 886
DrdI	GACNNNNNNGTC	1 cut(s)	764
DseDI	GACNNNNNNGTC	1 cut(s)	764
EaeI	YGGCCR	1 cut(s)	401
Eam1104I	CTCTTC	2 cut(s)	38, 474
EarI	CTCTTC	2 cut(s)	38, 474
Eco130I	CCWWGG	1 cut(s)	655
Eco32I	GATATC	1 cut(s)	643
Eco57I	CTGAAG	1 cut(s)	455
Eco88I	CYCGRG	2 cut(s)	323, 626
EcoRII	CCWGG	1 cut(s)	532
EcoRV	GATATC	1 cut(s)	643
EcoT14I	CCWWGG	1 cut(s)	655
ErhI	CCWWGG	1 cut(s)	655
FaeI	CATG	1 cut(s)	822
FaiI	YATR	7 cut(s)	495, 506, 622, 718, 720, 820, 880
FatI	CATG	1 cut(s)	818
FbaI	TGATCA	2 cut(s)	825, 850
FblI	GTMKAC	1 cut(s)	879
Fnu4HI	GCNGC	6 cut(s)	113, 567, 597, 729, 798, 945
FokI	GGATG	5 cut(s)	31, 411, 566, 695, 826
Fsp4HI	GCNGC	6 cut(s)	113, 567, 597, 729, 798, 945
FspBI	CTAG	5 cut(s)	147, 188, 350, 581, 740
GluI	GCNGC	6 cut(s)	113, 567, 597, 729, 798, 945
GsaI	CCCAGC	1 cut(s)	573
HaeIII	GGCC	2 cut(s)	403, 789
Hin1II	CATG	1 cut(s)	822
HindIII	AAGCTT	1 cut(s)	249
HinfI	GANTC	8 cut(s)	28, 220, 227, 235, 305, 346, 422, 631
Hpy166II	GTNNAC	2 cut(s)	834, 880
Hpy188I	TCNGA	8 cut(s)	198, 232, 304, 345, 356, 435, 850, 855
Hpy188III	TCNNGA	9 cut(s)	126, 147, 188, 224, 311, 473, 513, 626, 628
Hpy8I	GTNNAC	2 cut(s)	834, 880
Hpy99I	CGWCG	2 cut(s)	85, 215
HpyAV	CCTTC	3 cut(s)	303, 720, 901
HpyCH4III	ACNGT	3 cut(s)	245, 761, 779
HpyCH4IV	ACGT	2 cut(s)	181, 830
HpyCH4V	TGCA	5 cut(s)	15, 596, 677, 793, 944
HpyF10VI	GCNNNNNNNGC	2 cut(s)	566, 806
HpyF3I	CTNAG	4 cut(s)	303, 432, 486, 890
HpySE526I	ACGT	2 cut(s)	181, 830
Hsp92II	CATG	1 cut(s)	822
Ksp22I	TGATCA	2 cut(s)	825, 850
Kzo9I	GATC	5 cut(s)	445, 706, 825, 850, 886
LmnI	GCTCC	1 cut(s)	318
Lsp1109I	GCAGC	5 cut(s)	99, 553, 608, 715, 784
LweI	GCATC	2 cut(s)	250, 856
MabI	ACCWGGT	1 cut(s)	532
MaeI	CTAG	5 cut(s)	147, 188, 350, 581, 740
MaeII	ACGT	2 cut(s)	181, 830
MaeIII	GTNAC	2 cut(s)	67, 937
MalI	GATC	5 cut(s)	447, 708, 827, 852, 888
MbiI	CCGCTC	1 cut(s)	649
MboI	GATC	5 cut(s)	445, 706, 825, 850, 886
MboII	GAAGA	6 cut(s)	25, 66, 147, 288, 461, 831
MlsI	TGGCCA	1 cut(s)	403
MluCI	AATT	2 cut(s)	856, 902
MluNI	TGGCCA	1 cut(s)	403
MlyI	GAGTC	2 cut(s)	314, 416
MmeI	TCCRAC	1 cut(s)	334
Mox20I	TGGCCA	1 cut(s)	403
MscI	TGGCCA	1 cut(s)	403
MseI	TTAA	3 cut(s)	458, 690, 949
MslI	CAYNNNNRTG	1 cut(s)	276
Msp20I	TGGCCA	1 cut(s)	403
MspA1I	CMGCKG	2 cut(s)	53, 728
MspR9I	CCNGG	1 cut(s)	534
MvaI	CCWGG	1 cut(s)	534
MwoI	GCNNNNNNNGC	2 cut(s)	566, 806
NdeII	GATC	5 cut(s)	445, 706, 825, 850, 886
NlaIII	CATG	1 cut(s)	822
NlaIV	GGNNCC	3 cut(s)	58, 320, 653
NmeAIII	GCCGAG	2 cut(s)	146, 757
NmuCI	GTSAC	1 cut(s)	937
NspV	TTCGAA	1 cut(s)	140
PaeR7I	CTCGAG	2 cut(s)	323, 626
PcsI	WCGNNNNNNNCGW	1 cut(s)	330
PfeI	GAWTC	6 cut(s)	28, 220, 227, 235, 346, 631
PflMI	CCANNNNNTGG	1 cut(s)	533
PkrI	GCNGC	6 cut(s)	114, 568, 598, 730, 799, 946
PleI	GAGTC	2 cut(s)	313, 416
PpsI	GAGTC	2 cut(s)	313, 416
Ppu21I	YACGTR	1 cut(s)	831
Psp6I	CCWGG	1 cut(s)	532
PspFI	CCCAGC	1 cut(s)	569
PspGI	CCWGG	1 cut(s)	532
PspN4I	GGNNCC	3 cut(s)	58, 320, 653
PspXI	VCTCGAGB	1 cut(s)	323
PstI	CTGCAG	3 cut(s)	598, 795, 946
PvuII	CAGCTG	1 cut(s)	728
RsaI	GTAC	1 cut(s)	833
RsaNI	GTAC	1 cut(s)	832
RseI	CAYNNNNRTG	1 cut(s)	276
SaqAI	TTAA	3 cut(s)	458, 690, 949
SatI	GCNGC	6 cut(s)	113, 567, 597, 729, 798, 945
Sau3AI	GATC	5 cut(s)	445, 706, 825, 850, 886
SbfI	CCTGCAGG	1 cut(s)	795
SchI	GAGTC	2 cut(s)	314, 416
ScrFI	CCNGG	1 cut(s)	534
SdaI	CCTGCAGG	1 cut(s)	795
SexAI	ACCWGGT	1 cut(s)	532
SfaNI	GCATC	2 cut(s)	250, 856
SfcI	CTRYAG	3 cut(s)	594, 791, 942
Sfr274I	CTCGAG	2 cut(s)	323, 626
SfuI	TTCGAA	1 cut(s)	140
SlaI	CTCGAG	2 cut(s)	323, 626
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	2 cut(s)	323, 626
SmoI	CTYRAG	2 cut(s)	323, 626
Sse8387I	CCTGCAGG	1 cut(s)	795
Sse9I	AATT	2 cut(s)	856, 902
SsiI	CCGC	3 cut(s)	5, 51, 649
SspMI	CTAG	5 cut(s)	147, 188, 350, 581, 740
StyD4I	CCNGG	1 cut(s)	532
StyI	CCWWGG	1 cut(s)	655
TaaI	ACNGT	3 cut(s)	245, 761, 779
TaiI	ACGT	2 cut(s)	184, 833
TasI	AATT	2 cut(s)	856, 902
TfiI	GAWTC	6 cut(s)	28, 220, 227, 235, 346, 631
Tru1I	TTAA	3 cut(s)	458, 690, 949
Tru9I	TTAA	3 cut(s)	458, 690, 949
TscAI	CASTG	3 cut(s)	756, 784, 946
TseFI	GTSAC	1 cut(s)	937
TseI	GCWGC	6 cut(s)	112, 566, 596, 728, 797, 944
Tsp45I	GTSAC	1 cut(s)	937
TspDTI	ATGAA	1 cut(s)	570
TspGWI	ACGGA	1 cut(s)	55
TspRI	CASTG	3 cut(s)	756, 784, 946
Van91I	CCANNNNNTGG	1 cut(s)	533
XapI	RAATTY	1 cut(s)	856
XbaI	TCTAGA	2 cut(s)	146, 187
XhoI	CTCGAG	2 cut(s)	323, 626
XmiI	GTMKAC	1 cut(s)	879
XspI	CTAG	5 cut(s)	147, 188, 350, 581, 740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.