Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007382

Physical Location & Seq

Genomic Coordinates Forward (+)

38661355 .. 38664260

Gene Structure 2906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g52570.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCGTCCACGATCACTTTCTCTTCCCCTTCCTCCTATTTTTCTACTCTCCCACACCACCCGCCTCCACTTCCGAAGCCCCAGAAATGTCTCCACCACCTCCACACGACAACCTCTCTCACTCTCTGTCTCTGCTTCTTCCTCTCCCTCTCTCCAAGCCTTGATTTTCGACTGCGACGGCGTCATCCTCGAGTCCGAGCACTTGCACCGCCAAGCTTACAAGTTACAACGACGCCTCCGCTCACTTCAACGTCCGCTGCTCCTCCTCTCATCCCCTCGTTTGGGACCCCGACTTCTACGACCAGCTTCAGAACCAAATCGGCGGCAAGCCCAAAATGCGGTGGTCCGTACTTTAAGGAAAACGGGTGGCCGTCGTCCACTATCTTTGAGAAGCCTCCAGAAGACGATGAGGGCCGAGCCAAGATTATTGACACTCTTCAGGATTGGAAAACTGAGAGGTATAAAGAAATTATCAAGTCCGGAACTGTGGAACCAAGACCAGGAGTTTTGAGATTAATGGATGAGGCTAAGGCAGCTGTAAGATTACATTTACCATTGAAATTGCAATTTTCTGGGGGAAAAAGGCTCGCTGTTTGCTCTGCAGCTACTATAAGTTCAGTTATACTATGTCTTGAATGCCATAGGAAATGTGATGATGTGAAGGGAAAAAAGCCCGACCCTTCAATATATCTTACAGCTGCCAAGAGACTCGGTATCTCATCAAGCGATTGTTTGGTTGTGGAGGACAGTGTTATTGGGCTACAGGCAGCAACAAAAGCTGGGATGTCATGTGTGATTAGCTATACATCTTCAACAGCTGACCAGACTGAAAGACTTGGAATTATTACTTCAAAATACTGTCATTGCCAATTAGAAAAGTGCACTTCTTCAGACCTTTTAGCATTTTCTCTTACATTTGTCATTTCAGAGGTCCTAAATATGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

316

Amino Acids

34.38

Weight (kDa)

9.15

Isoelectric Point (pI)

52.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	142 - 261	7.6e-10	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	154 - 265	1.9e-09	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39970
fragaria_vesca	FvH4_1g20570 FvH4_1g20570 FvH4_1g20570 FvH4_1g20570 FvH4_1g20570 FvH4_6g52570 FvH4_6g52570
malus_domestica	MD15G1322100.v1.1
prunus_persica	Prupe.6G190700_v2.0.a1 Prupe.6G190700_v2.0.a1
pyrus_communis	pycom15g28300
rosa_chinensis	RchiOBHm_Chr2g0112791
rosa_laevigata	RLG00000018010
rosa_multiflora	Rmu_co8125272.1_g000001 Rmu_sc0001708.1_g000020 Rmu_sc0002351.1_g000008
rosa_roxburghii	Rroxscaffold_2G00131140
rosa_rugosa	Rorug02G0182700
rosa_samantha	Rh2AG237400 Rh2BG250100 Rh2CG241300 Rh2DG244800
rosa_wichuraiana	Rw2G018360 Rw2G018550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	241
AccIII	TCCGGA	1 cut(s)	479
AciI	CCGC	6 cut(s)	62, 209, 239, 255, 323, 339
AcoI	YGGCCR	1 cut(s)	368
AcuI	CTGAAG	3 cut(s)	292, 422, 873
AcyI	GRCGYC	3 cut(s)	5, 181, 233
AfaI	GTAC	1 cut(s)	350
AfiI	CCNNNNNNNGG	4 cut(s)	281, 282, 338, 500
AgsI	TTSAA	6 cut(s)	249, 559, 635, 684, 813, 852
AjnI	CCWGG	1 cut(s)	499
AluBI	AGCT	8 cut(s)	216, 306, 536, 605, 698, 779, 801, 818
AluI	AGCT	8 cut(s)	216, 306, 536, 605, 698, 779, 801, 818
Alw21I	GWGCWC	2 cut(s)	202, 884
Alw26I	GTCTC	3 cut(s)	95, 134, 700
Alw44I	GTGCAC	1 cut(s)	880
Ama87I	CYCGRG	1 cut(s)	189
Aor13HI	TCCGGA	1 cut(s)	479
AoxI	GGCC	2 cut(s)	368, 412
ApaLI	GTGCAC	1 cut(s)	880
ApeKI	GCWGC	5 cut(s)	257, 533, 602, 698, 767
AseI	ATTAAT	1 cut(s)	515
AspS9I	GGNCC	4 cut(s)	285, 344, 412, 931
AvaI	CYCGRG	1 cut(s)	189
AvaII	GGWCC	3 cut(s)	285, 344, 931
BaeGI	GKGCMC	1 cut(s)	884
BbsI	GAAGAC	1 cut(s)	408
Bbv12I	GWGCWC	2 cut(s)	202, 884
BbvI	GCAGC	5 cut(s)	244, 545, 614, 685, 779
BceAI	ACGGC	2 cut(s)	194, 355
BciT130I	CCWGG	1 cut(s)	501
BcoDI	GTCTC	3 cut(s)	95, 134, 700
BfmI	CTRYAG	2 cut(s)	600, 761
BisI	GCNGC	6 cut(s)	258, 324, 534, 603, 699, 768
BlsI	GCNGC	6 cut(s)	259, 325, 535, 604, 700, 769
Bme1390I	CCNGG	1 cut(s)	501
Bme18I	GGWCC	3 cut(s)	285, 344, 931
BmeT110I	CYCGRG	1 cut(s)	189
BmgT120I	GGNCC	4 cut(s)	285, 344, 412, 931
BmiI	GGNNCC	3 cut(s)	286, 287, 492
BmrFI	CCNGG	1 cut(s)	501
BpiI	GAAGAC	1 cut(s)	408
BpmI	CTGGAG	1 cut(s)	381
Bpu10I	CCTNAGC	1 cut(s)	528
BsaHI	GRCGYC	3 cut(s)	5, 181, 233
BsaWI	WCCGGW	1 cut(s)	479
BsaXI	ACNNNNNCTCC	2 cut(s)	220, 250
Bsc4I	CCNNNNNNNGG	4 cut(s)	281, 282, 338, 500
Bse3DI	GCAATG	1 cut(s)	862
BseAI	TCCGGA	1 cut(s)	479
BseBI	CCWGG	1 cut(s)	501
BseGI	GGATG	4 cut(s)	184, 270, 526, 789
BseLI	CCNNNNNNNGG	4 cut(s)	281, 282, 338, 500
BseMI	GCAATG	1 cut(s)	862
BseMII	CTCAG	1 cut(s)	444
BseRI	GAGGAG	2 cut(s)	252, 255
BseSI	GKGCMC	1 cut(s)	884
BseXI	GCAGC	5 cut(s)	244, 545, 614, 685, 779
BseYI	CCCAGC	1 cut(s)	779
BshFI	GGCC	2 cut(s)	370, 414
BsiHKAI	GWGCWC	2 cut(s)	202, 884
BsiHKCI	CYCGRG	1 cut(s)	189
BsiSI	CCGG	1 cut(s)	480
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	4 cut(s)	281, 282, 338, 500
BsmAI	GTCTC	3 cut(s)	95, 134, 700
BsmFI	GGGAC	1 cut(s)	298
BsmI	GAATGC	1 cut(s)	641
BsnI	GGCC	2 cut(s)	370, 414
BsoBI	CYCGRG	1 cut(s)	189
Bsp1286I	GDGCHC	2 cut(s)	202, 884
Bsp13I	TCCGGA	1 cut(s)	479
Bsp143I	GATC	1 cut(s)	12
BspACI	CCGC	6 cut(s)	62, 209, 239, 255, 323, 339
BspANI	GGCC	2 cut(s)	370, 414
BspCNI	CTCAG	1 cut(s)	445
BspEI	TCCGGA	1 cut(s)	479
BspLI	GGNNCC	3 cut(s)	286, 287, 492
BspMAI	CTGCAG	1 cut(s)	604
BsrBI	CCGCTC	1 cut(s)	241
BsrDI	GCAATG	1 cut(s)	862
BssMI	GATC	1 cut(s)	12
BssNI	GRCGYC	3 cut(s)	5, 181, 233
Bst2UI	CCWGG	1 cut(s)	501
Bst4CI	ACNGT	3 cut(s)	487, 749, 860
Bst6I	CTCTTC	2 cut(s)	28, 441
BstACI	GRCGYC	3 cut(s)	5, 181, 233
BstC8I	GCNNGC	2 cut(s)	328, 588
BstDEI	CTNAG	2 cut(s)	453, 528
BstF5I	GGATG	4 cut(s)	184, 270, 526, 789
BstKTI	GATC	1 cut(s)	15
BstMAI	GTCTC	3 cut(s)	95, 134, 700
BstMBI	GATC	1 cut(s)	12
BstMWI	GCNNNNNNNGC	3 cut(s)	336, 533, 776
BstNI	CCWGG	1 cut(s)	501
BstSCI	CCNGG	1 cut(s)	499
BstSFI	CTRYAG	2 cut(s)	600, 761
BstSLI	GKGCMC	1 cut(s)	884
BstV1I	GCAGC	5 cut(s)	244, 545, 614, 685, 779
BstV2I	GAAGAC	1 cut(s)	408
BsuRI	GGCC	2 cut(s)	370, 414
BtsCI	GGATG	4 cut(s)	184, 270, 526, 789
BtsIMutI	CAGTG	1 cut(s)	754
Cac8I	GCNNGC	2 cut(s)	328, 588
Cfr13I	GGNCC	4 cut(s)	285, 344, 412, 931
CseI	GACGC	2 cut(s)	170, 241
Csp6I	GTAC	1 cut(s)	349
CspCI	CAANNNNNGTGG	2 cut(s)	367, 402
CviAII	CATG	1 cut(s)	789
CviQI	GTAC	1 cut(s)	349
DdeI	CTNAG	2 cut(s)	453, 528
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
EaeI	YGGCCR	1 cut(s)	368
Eam1104I	CTCTTC	2 cut(s)	28, 441
EarI	CTCTTC	2 cut(s)	28, 441
Eco47I	GGWCC	3 cut(s)	285, 344, 931
Eco57I	CTGAAG	3 cut(s)	292, 422, 873
Eco88I	CYCGRG	1 cut(s)	189
EcoO109I	RGGNCCY	2 cut(s)	285, 931
EcoRII	CCWGG	1 cut(s)	499
FaeI	CATG	1 cut(s)	792
FaiI	YATR	9 cut(s)	462, 611, 623, 628, 642, 688, 790, 804, 941
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	1 cut(s)	788
FauI	CCCGC	1 cut(s)	69
Fnu4HI	GCNGC	6 cut(s)	258, 324, 534, 603, 699, 768
FokI	GGATG	4 cut(s)	171, 257, 533, 796
Fsp4HI	GCNGC	6 cut(s)	258, 324, 534, 603, 699, 768
GluI	GCNGC	6 cut(s)	258, 324, 534, 603, 699, 768
GsaI	CCCAGC	1 cut(s)	783
GsuI	CTGGAG	1 cut(s)	381
HaeIII	GGCC	2 cut(s)	370, 414
HapII	CCGG	1 cut(s)	480
HgaI	GACGC	2 cut(s)	170, 241
Hin1I	GRCGYC	3 cut(s)	5, 181, 233
Hin1II	CATG	1 cut(s)	792
HindIII	AAGCTT	1 cut(s)	214
HinfI	GANTC	2 cut(s)	192, 708
HpaII	CCGG	1 cut(s)	480
Hpy166II	GTNNAC	3 cut(s)	9, 378, 882
Hpy188I	TCNGA	5 cut(s)	75, 197, 311, 892, 928
Hpy188III	TCNNGA	4 cut(s)	398, 440, 480, 632
Hpy8I	GTNNAC	3 cut(s)	9, 378, 882
Hpy99I	CGWCG	3 cut(s)	180, 235, 376
HpyAV	CCTTC	3 cut(s)	39, 655, 690
HpyCH4III	ACNGT	3 cut(s)	487, 749, 860
HpyCH4IV	ACGT	1 cut(s)	251
HpyCH4V	TGCA	4 cut(s)	206, 565, 602, 882
HpyF10VI	GCNNNNNNNGC	3 cut(s)	336, 533, 776
HpyF3I	CTNAG	2 cut(s)	453, 528
HpySE526I	ACGT	1 cut(s)	251
Hsp92I	GRCGYC	3 cut(s)	5, 181, 233
Hsp92II	CATG	1 cut(s)	792
KflI	GGGWCCC	1 cut(s)	285
Kpn2I	TCCGGA	1 cut(s)	479
Kzo9I	GATC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	265
Lsp1109I	GCAGC	5 cut(s)	244, 545, 614, 685, 779
MaeII	ACGT	1 cut(s)	251
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	1 cut(s)	14
MbiI	CCGCTC	1 cut(s)	241
MboI	GATC	1 cut(s)	12
MboII	GAAGA	6 cut(s)	15, 130, 413, 428, 801, 879
MhlI	GDGCHC	2 cut(s)	202, 884
MluCI	AATT	5 cut(s)	468, 560, 566, 840, 869
MlyI	GAGTC	2 cut(s)	201, 702
MroI	TCCGGA	1 cut(s)	479
MseI	TTAA	3 cut(s)	354, 515, 946
MspA1I	CMGCKG	4 cut(s)	257, 536, 698, 818
MspI	CCGG	1 cut(s)	480
MspR9I	CCNGG	1 cut(s)	501
Mva1269I	GAATGC	1 cut(s)	641
MvaI	CCWGG	1 cut(s)	501
MwoI	GCNNNNNNNGC	3 cut(s)	336, 533, 776
NdeII	GATC	1 cut(s)	12
NlaIII	CATG	1 cut(s)	792
NlaIV	GGNNCC	3 cut(s)	286, 287, 492
NmeAIII	GCCGAG	1 cut(s)	440
PaeR7I	CTCGAG	1 cut(s)	189
PctI	GAATGC	1 cut(s)	641
PflFI	GACNNNGTC	1 cut(s)	180
PkrI	GCNGC	6 cut(s)	259, 325, 535, 604, 700, 769
PleI	GAGTC	2 cut(s)	200, 702
PpsI	GAGTC	2 cut(s)	200, 702
PpuMI	RGGWCCY	2 cut(s)	285, 931
PshBI	ATTAAT	1 cut(s)	515
Psp5II	RGGWCCY	2 cut(s)	285, 931
Psp6I	CCWGG	1 cut(s)	499
PspFI	CCCAGC	1 cut(s)	779
PspGI	CCWGG	1 cut(s)	499
PspN4I	GGNNCC	3 cut(s)	286, 287, 492
PspPI	GGNCC	4 cut(s)	285, 344, 412, 931
PspPPI	RGGWCCY	2 cut(s)	285, 931
PspXI	VCTCGAGB	1 cut(s)	189
PstI	CTGCAG	1 cut(s)	604
PsyI	GACNNNGTC	1 cut(s)	180
PvuII	CAGCTG	3 cut(s)	536, 698, 818
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
SaqAI	TTAA	3 cut(s)	354, 515, 946
SatI	GCNGC	6 cut(s)	258, 324, 534, 603, 699, 768
Sau3AI	GATC	1 cut(s)	12
Sau96I	GGNCC	4 cut(s)	285, 344, 412, 931
SchI	GAGTC	2 cut(s)	201, 702
ScrFI	CCNGG	1 cut(s)	501
SduI	GDGCHC	2 cut(s)	202, 884
SfcI	CTRYAG	2 cut(s)	600, 761
Sfr274I	CTCGAG	1 cut(s)	189
SinI	GGWCC	3 cut(s)	285, 344, 931
SlaI	CTCGAG	1 cut(s)	189
SmlI	CTYRAG	1 cut(s)	189
SmoI	CTYRAG	1 cut(s)	189
Sse9I	AATT	5 cut(s)	468, 560, 566, 840, 869
SsiI	CCGC	6 cut(s)	62, 209, 239, 255, 323, 339
StyD4I	CCNGG	1 cut(s)	499
TaaI	ACNGT	3 cut(s)	487, 749, 860
TaiI	ACGT	1 cut(s)	254
TaqI	TCGA	2 cut(s)	169, 190
TasI	AATT	5 cut(s)	468, 560, 566, 840, 869
TauI	GCSGC	1 cut(s)	326
Tru1I	TTAA	3 cut(s)	354, 515, 946
Tru9I	TTAA	3 cut(s)	354, 515, 946
TscAI	CASTG	1 cut(s)	754
TseI	GCWGC	5 cut(s)	257, 533, 602, 698, 767
TspGWI	ACGGA	1 cut(s)	336
TspRI	CASTG	1 cut(s)	754
Tth111I	GACNNNGTC	1 cut(s)	180
VneI	GTGCAC	1 cut(s)	880
VpaK11BI	GGWCC	3 cut(s)	285, 344, 931
VspI	ATTAAT	1 cut(s)	515
XhoI	CTCGAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.