Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8125272.1

Orthogroup ID

OG0007382

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 454

Gene Structure 454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8125272.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 308 bp

cttcttcctctgctgctctccaagccttgattttcgactgcgacggcgtcatcctcgagtcggagcacttgcaccgccaagcttacaacgacgccttcgctcacttcaacgtccgctgctcctctcagaccctcaattgggaccccgacttctacgaccagctccagaaccaaatcggcggcggcaagcccaaaatgcgatggtactttaaggagaacgggtggccgtcgtccaccattttcgagaagcctccagaagacgatgagggccgagccaagatcatcgacactcttcaggttctagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

101

Amino Acids

11.55

Weight (kDa)

4.81

Isoelectric Point (pI)

50.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39970
fragaria_vesca	FvH4_1g20570 FvH4_1g20570 FvH4_1g20570 FvH4_1g20570 FvH4_1g20570 FvH4_6g52570 FvH4_6g52570
malus_domestica	MD15G1322100.v1.1
prunus_persica	Prupe.6G190700_v2.0.a1 Prupe.6G190700_v2.0.a1
pyrus_communis	pycom15g28300
rosa_chinensis	RchiOBHm_Chr2g0112791
rosa_laevigata	RLG00000018010
rosa_multiflora	Rmu_co8125272.1_g000001 Rmu_sc0001708.1_g000020 Rmu_sc0002351.1_g000008
rosa_roxburghii	Rroxscaffold_2G00131140
rosa_rugosa	Rorug02G0182700
rosa_samantha	Rh2AG237400 Rh2BG250100 Rh2CG241300 Rh2DG244800
rosa_wichuraiana	Rw2G018360 Rw2G018550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	75, 114, 179, 182
AcoI	YGGCCR	1 cut(s)	223
AcuI	CTGAAG	1 cut(s)	277
AcyI	GRCGYC	2 cut(s)	47, 92
AfaI	GTAC	1 cut(s)	205
AfiI	CCNNNNNNNGG	3 cut(s)	60, 137, 138
AgsI	TTSAA	1 cut(s)	108
AluBI	AGCT	2 cut(s)	82, 162
AluI	AGCT	2 cut(s)	82, 162
Alw21I	GWGCWC	1 cut(s)	68
Ama87I	CYCGRG	1 cut(s)	55
AoxI	GGCC	2 cut(s)	223, 267
ApeKI	GCWGC	2 cut(s)	13, 116
AspS9I	GGNCC	2 cut(s)	141, 267
AvaI	CYCGRG	1 cut(s)	55
AvaII	GGWCC	1 cut(s)	141
BbsI	GAAGAC	1 cut(s)	263
Bbv12I	GWGCWC	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	1 cut(s)	194
BceAI	ACGGC	2 cut(s)	60, 210
BfaI	CTAG	1 cut(s)	301
BisI	GCNGC	4 cut(s)	14, 117, 180, 183
BlsI	GCNGC	4 cut(s)	15, 118, 181, 184
Bme18I	GGWCC	1 cut(s)	141
BmeT110I	CYCGRG	1 cut(s)	55
BmgT120I	GGNCC	2 cut(s)	141, 267
BmiI	GGNNCC	2 cut(s)	142, 143
BpiI	GAAGAC	1 cut(s)	263
BpmI	CTGGAG	2 cut(s)	148, 236
BsaHI	GRCGYC	2 cut(s)	47, 92
BsaXI	ACNNNNNCTCC	2 cut(s)	205, 235
Bsc4I	CCNNNNNNNGG	3 cut(s)	60, 137, 138
BseGI	GGATG	1 cut(s)	50
BseLI	CCNNNNNNNGG	3 cut(s)	60, 137, 138
BseMII	CTCAG	1 cut(s)	139
BseRI	GAGGAG	1 cut(s)	111
BseXI	GCAGC	1 cut(s)	103
BshFI	GGCC	2 cut(s)	225, 269
BsiHKAI	GWGCWC	1 cut(s)	68
BsiHKCI	CYCGRG	1 cut(s)	55
BslFI	GGGAC	1 cut(s)	154
BslI	CCNNNNNNNGG	3 cut(s)	60, 137, 138
BsmFI	GGGAC	1 cut(s)	154
BsnI	GGCC	2 cut(s)	225, 269
BsoBI	CYCGRG	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp143I	GATC	1 cut(s)	278
BspACI	CCGC	4 cut(s)	75, 114, 179, 182
BspANI	GGCC	2 cut(s)	225, 269
BspCNI	CTCAG	1 cut(s)	138
BspLI	GGNNCC	2 cut(s)	142, 143
BssMI	GATC	1 cut(s)	278
BssNI	GRCGYC	2 cut(s)	47, 92
Bst6I	CTCTTC	1 cut(s)	296
BstACI	GRCGYC	2 cut(s)	47, 92
BstC8I	GCNNGC	1 cut(s)	187
BstDEI	CTNAG	1 cut(s)	125
BstF5I	GGATG	1 cut(s)	50
BstKTI	GATC	1 cut(s)	281
BstMBI	GATC	1 cut(s)	278
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 195
BstV1I	GCAGC	1 cut(s)	103
BstV2I	GAAGAC	1 cut(s)	263
BsuRI	GGCC	2 cut(s)	225, 269
BtgZI	GCGATG	1 cut(s)	213
BtsCI	GGATG	1 cut(s)	50
Cac8I	GCNNGC	1 cut(s)	187
Cfr13I	GGNCC	2 cut(s)	141, 267
CseI	GACGC	2 cut(s)	36, 100
Csp6I	GTAC	1 cut(s)	204
CviJI	RGCY	8 cut(s)	25, 82, 162, 189, 225, 249, 269, 274
CviKI_1	RGCY	8 cut(s)	25, 82, 162, 189, 225, 249, 269, 274
CviQI	GTAC	1 cut(s)	204
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	1 cut(s)	280
DpnII	GATC	1 cut(s)	278
EaeI	YGGCCR	1 cut(s)	223
Eam1104I	CTCTTC	1 cut(s)	296
EarI	CTCTTC	1 cut(s)	296
Eco47I	GGWCC	1 cut(s)	141
Eco57I	CTGAAG	1 cut(s)	277
Eco88I	CYCGRG	1 cut(s)	55
EcoO109I	RGGNCCY	1 cut(s)	141
FaqI	GGGAC	1 cut(s)	154
Fnu4HI	GCNGC	4 cut(s)	14, 117, 180, 183
FokI	GGATG	1 cut(s)	37
Fsp4HI	GCNGC	4 cut(s)	14, 117, 180, 183
FspBI	CTAG	1 cut(s)	301
GluI	GCNGC	4 cut(s)	14, 117, 180, 183
GsuI	CTGGAG	2 cut(s)	148, 236
HaeIII	GGCC	2 cut(s)	225, 269
HgaI	GACGC	2 cut(s)	36, 100
Hin1I	GRCGYC	2 cut(s)	47, 92
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	1 cut(s)	58
Hpy166II	GTNNAC	1 cut(s)	233
Hpy188I	TCNGA	2 cut(s)	63, 128
Hpy188III	TCNNGA	3 cut(s)	165, 243, 253
Hpy8I	GTNNAC	1 cut(s)	233
Hpy99I	CGWCG	3 cut(s)	46, 94, 231
HpyAV	CCTTC	1 cut(s)	105
HpyCH4IV	ACGT	1 cut(s)	110
HpyCH4V	TGCA	1 cut(s)	72
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 195
HpyF3I	CTNAG	1 cut(s)	125
HpySE526I	ACGT	1 cut(s)	110
Hsp92I	GRCGYC	2 cut(s)	47, 92
KflI	GGGWCCC	1 cut(s)	141
Kzo9I	GATC	1 cut(s)	278
LmnI	GCTCC	3 cut(s)	63, 124, 167
LpnPI	CCDG	4 cut(s)	172, 178, 266, 280
Lsp1109I	GCAGC	1 cut(s)	103
MaeI	CTAG	1 cut(s)	301
MaeII	ACGT	1 cut(s)	110
MalI	GATC	1 cut(s)	280
MboI	GATC	1 cut(s)	278
MboII	GAAGA	2 cut(s)	268, 283
MfeI	CAATTG	1 cut(s)	135
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	1 cut(s)	135
MlyI	GAGTC	1 cut(s)	67
MmeI	TCCRAC	1 cut(s)	41
MnlI	CCTC	6 cut(s)	18, 64, 132, 142, 258, 260
MseI	TTAA	1 cut(s)	209
MspA1I	CMGCKG	1 cut(s)	116
MunI	CAATTG	1 cut(s)	135
MwoI	GCNNNNNNNGC	2 cut(s)	22, 195
NdeII	GATC	1 cut(s)	278
NlaIV	GGNNCC	2 cut(s)	142, 143
NmeAIII	GCCGAG	1 cut(s)	295
PaeR7I	CTCGAG	1 cut(s)	55
PflFI	GACNNNGTC	1 cut(s)	46
PkrI	GCNGC	4 cut(s)	15, 118, 181, 184
PleI	GAGTC	1 cut(s)	66
PpsI	GAGTC	1 cut(s)	66
PpuMI	RGGWCCY	1 cut(s)	141
Psp5II	RGGWCCY	1 cut(s)	141
PspN4I	GGNNCC	2 cut(s)	142, 143
PspPI	GGNCC	2 cut(s)	141, 267
PspPPI	RGGWCCY	1 cut(s)	141
PspXI	VCTCGAGB	1 cut(s)	55
PsyI	GACNNNGTC	1 cut(s)	46
RsaI	GTAC	1 cut(s)	205
RsaNI	GTAC	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	209
SatI	GCNGC	4 cut(s)	14, 117, 180, 183
Sau3AI	GATC	1 cut(s)	278
Sau96I	GGNCC	2 cut(s)	141, 267
SchI	GAGTC	1 cut(s)	67
SduI	GDGCHC	1 cut(s)	68
SetI	ASST	4 cut(s)	84, 113, 164, 299
Sfr274I	CTCGAG	1 cut(s)	55
SinI	GGWCC	1 cut(s)	141
SlaI	CTCGAG	1 cut(s)	55
SmlI	CTYRAG	1 cut(s)	55
SmoI	CTYRAG	1 cut(s)	55
Sse9I	AATT	1 cut(s)	135
SsiI	CCGC	4 cut(s)	75, 114, 179, 182
SspMI	CTAG	1 cut(s)	301
TaiI	ACGT	1 cut(s)	113
TaqI	TCGA	4 cut(s)	35, 56, 242, 284
TasI	AATT	1 cut(s)	135
TauI	GCSGC	2 cut(s)	182, 185
Tru1I	TTAA	1 cut(s)	209
Tru9I	TTAA	1 cut(s)	209
TseI	GCWGC	2 cut(s)	13, 116
Tth111I	GACNNNGTC	1 cut(s)	46
VpaK11BI	GGWCC	1 cut(s)	141
XhoI	CTCGAG	1 cut(s)	55
XspI	CTAG	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.