Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0007382

Physical Location & Seq

Genomic Coordinates Forward (+)

12773416 .. 12776342

Gene Structure 2927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g20570.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCGTCCTCGATCACTCTCTCTTCCCCCTCCTCCTCTTTCCTACTCTCCCACACCACCCGCCTCCACTTCCGAAGCCCCAGAAATCTCTCCACCACCTCCACACGACGACCTCTCTCACTCTCTGTCTCTGCTTCTTCCTCTCCCTCTCTCCAAGCCTTGATTTTCGACTGCGACGGCGTCATCCTCGAGTCCGAGCACTTGCACCGCCAAGCTTACAACGACGCCTTCGCTCACTTCAACGTCCGCTGCTCCTCCTCTCAGCCCCTCGTTTGGGACCCCGACTTCTATGACCAGCTTCAGAACCAAATCGGCGGCGGCAAGCCCAAAATGCGGTGGTACTTTAAGGAAAACGGGTGGCCGTCGTCCACCATCTTCGAGAAGCCTCCGGAAGACGATGAGGGTCGAGCCAAGATCATCGACACTCTTCAGGATTGGAAAACTGAGAGGTATAAAGAAATTATCAAGTCCGGAACTGTGGAACCAAGACCAGGAGTTTTGAGATTGATGGATGAGGCCAAGGCAGCTGGGAAAAAGCTCGCTGTATGCTCTGCAGCTACTAAAAGCTCAGTTATACTATGTCTTGAAAGCCTGATAGGAAACGAGCGCTTTCAAGGTCTTGATTGCTTTCTTGCTGGTGATGATGTGAAGGAAAAAAAGCCCGACCCTTCAATATATCTTACAGCTGCCAAGAGACTCGGTATCTCAGCAAGCGATTGTTTGGTTGTGGAGGACAGTGTTATTGGGCTACAGGCAGCAACAAAAGCTGGGATGTCATGTGTGATTAGCTATACATCTTCAACAGCTGACCAGGATTTTAAAGATGCAATAGCAATATATCCTGACTTGAGTAACATAAGACTGAAAGACTTGGAATTATTACTTCAAAATACTGTCATTGCCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

303

Amino Acids

33.24

Weight (kDa)

6.0

Isoelectric Point (pI)

50.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	52 - 257	4.3e-25	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	147 - 261	2.1e-18	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39970
fragaria_vesca	FvH4_1g20570 FvH4_1g20570 FvH4_1g20570 FvH4_1g20570 FvH4_1g20570 FvH4_6g52570 FvH4_6g52570
malus_domestica	MD15G1322100.v1.1
prunus_persica	Prupe.6G190700_v2.0.a1 Prupe.6G190700_v2.0.a1
pyrus_communis	pycom15g28300
rosa_chinensis	RchiOBHm_Chr2g0112791
rosa_laevigata	RLG00000018010
rosa_multiflora	Rmu_co8125272.1_g000001 Rmu_sc0001708.1_g000020 Rmu_sc0002351.1_g000008
rosa_roxburghii	Rroxscaffold_2G00131140
rosa_rugosa	Rorug02G0182700
rosa_samantha	Rh2AG237400 Rh2BG250100 Rh2CG241300 Rh2DG244800
rosa_wichuraiana	Rw2G018360 Rw2G018550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	388, 470
AciI	CCGC	6 cut(s)	61, 208, 247, 315, 318, 334
AcoI	YGGCCR	1 cut(s)	359
AcuI	CTGAAG	2 cut(s)	284, 413
AcyI	GRCGYC	3 cut(s)	5, 180, 225
AfaI	GTAC	1 cut(s)	341
AfeI	AGCGCT	1 cut(s)	608
AfiI	CCNNNNNNNGG	4 cut(s)	273, 274, 333, 491
AgsI	TTSAA	6 cut(s)	241, 587, 614, 672, 801, 887
AjnI	CCWGG	2 cut(s)	490, 810
Alw21I	GWGCWC	1 cut(s)	201
Alw26I	GTCTC	2 cut(s)	133, 688
Ama87I	CYCGRG	1 cut(s)	188
Aor13HI	TCCGGA	2 cut(s)	388, 470
Aor51HI	AGCGCT	1 cut(s)	608
AoxI	GGCC	2 cut(s)	359, 516
ApeKI	GCWGC	5 cut(s)	249, 524, 554, 686, 755
AspLEI	GCGC	1 cut(s)	609
AspS9I	GGNCC	1 cut(s)	277
AsuHPI	GGTGA	1 cut(s)	650
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	277
BbsI	GAAGAC	1 cut(s)	399
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	5 cut(s)	236, 536, 566, 673, 767
BccI	CCATC	2 cut(s)	380, 502
BceAI	ACGGC	2 cut(s)	193, 346
BciT130I	CCWGG	2 cut(s)	492, 812
BcoDI	GTCTC	2 cut(s)	133, 688
BfmI	CTRYAG	2 cut(s)	552, 749
BfoI	RGCGCY	1 cut(s)	610
BisI	GCNGC	7 cut(s)	250, 316, 319, 525, 555, 687, 756
BlsI	GCNGC	7 cut(s)	251, 317, 320, 526, 556, 688, 757
Bme1390I	CCNGG	2 cut(s)	492, 812
Bme18I	GGWCC	1 cut(s)	277
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	3 cut(s)	278, 279, 483
BmrFI	CCNGG	2 cut(s)	492, 812
BmsI	GCATC	1 cut(s)	814
BpiI	GAAGAC	1 cut(s)	399
BpuEI	CTTGAG	1 cut(s)	868
BsaHI	GRCGYC	3 cut(s)	5, 180, 225
BsaJI	CCNNGG	1 cut(s)	519
BsaWI	WCCGGW	2 cut(s)	388, 470
Bsc4I	CCNNNNNNNGG	4 cut(s)	273, 274, 333, 491
Bse3DI	GCAATG	1 cut(s)	897
BseAI	TCCGGA	2 cut(s)	388, 470
BseBI	CCWGG	2 cut(s)	492, 812
BseDI	CCNNGG	1 cut(s)	519
BseGI	GGATG	3 cut(s)	183, 517, 777
BseLI	CCNNNNNNNGG	4 cut(s)	273, 274, 333, 491
BseMI	GCAATG	1 cut(s)	897
BseMII	CTCAG	4 cut(s)	275, 435, 582, 720
BseRI	GAGGAG	4 cut(s)	22, 25, 244, 247
BseXI	GCAGC	5 cut(s)	236, 536, 566, 673, 767
BseYI	CCCAGC	2 cut(s)	527, 767
BshFI	GGCC	2 cut(s)	361, 518
BsiHKAI	GWGCWC	1 cut(s)	201
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	2 cut(s)	389, 471
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	4 cut(s)	273, 274, 333, 491
BsmAI	GTCTC	2 cut(s)	133, 688
BsmFI	GGGAC	1 cut(s)	290
BsnI	GGCC	2 cut(s)	361, 518
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp13I	TCCGGA	2 cut(s)	388, 470
Bsp143I	GATC	2 cut(s)	12, 414
BspACI	CCGC	6 cut(s)	61, 208, 247, 315, 318, 334
BspANI	GGCC	2 cut(s)	361, 518
BspCNI	CTCAG	4 cut(s)	274, 436, 581, 719
BspEI	TCCGGA	2 cut(s)	388, 470
BspLI	GGNNCC	3 cut(s)	278, 279, 483
BspMAI	CTGCAG	1 cut(s)	556
BsrDI	GCAATG	1 cut(s)	897
BssECI	CCNNGG	1 cut(s)	519
BssMI	GATC	2 cut(s)	12, 414
BssNI	GRCGYC	3 cut(s)	5, 180, 225
BssT1I	CCWWGG	1 cut(s)	519
Bst2UI	CCWGG	2 cut(s)	492, 812
Bst4CI	ACNGT	3 cut(s)	478, 737, 895
Bst6I	CTCTTC	2 cut(s)	28, 432
BstACI	GRCGYC	3 cut(s)	5, 180, 225
BstC8I	GCNNGC	3 cut(s)	323, 540, 712
BstDEI	CTNAG	4 cut(s)	261, 444, 568, 706
BstF5I	GGATG	3 cut(s)	183, 517, 777
BstH2I	RGCGCY	1 cut(s)	610
BstHHI	GCGC	1 cut(s)	609
BstKTI	GATC	2 cut(s)	15, 417
BstMAI	GTCTC	2 cut(s)	133, 688
BstMBI	GATC	2 cut(s)	12, 414
BstMWI	GCNNNNNNNGC	3 cut(s)	331, 524, 764
BstNI	CCWGG	2 cut(s)	492, 812
BstSCI	CCNGG	2 cut(s)	490, 810
BstSFI	CTRYAG	2 cut(s)	552, 749
BstV1I	GCAGC	5 cut(s)	236, 536, 566, 673, 767
BstV2I	GAAGAC	1 cut(s)	399
BsuRI	GGCC	2 cut(s)	361, 518
BtsCI	GGATG	3 cut(s)	183, 517, 777
BtsIMutI	CAGTG	1 cut(s)	742
Cac8I	GCNNGC	3 cut(s)	323, 540, 712
CfoI	GCGC	1 cut(s)	609
Cfr13I	GGNCC	1 cut(s)	277
CseI	GACGC	2 cut(s)	169, 233
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	1 cut(s)	777
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	4 cut(s)	261, 444, 568, 706
DpnI	GATC	2 cut(s)	14, 416
DpnII	GATC	2 cut(s)	12, 414
DraI	TTTAAA	1 cut(s)	820
EaeI	YGGCCR	1 cut(s)	359
Eam1104I	CTCTTC	2 cut(s)	28, 432
EarI	CTCTTC	2 cut(s)	28, 432
Eco130I	CCWWGG	1 cut(s)	519
Eco47I	GGWCC	1 cut(s)	277
Eco47III	AGCGCT	1 cut(s)	608
Eco57I	CTGAAG	2 cut(s)	284, 413
Eco88I	CYCGRG	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	277
EcoRII	CCWGG	2 cut(s)	490, 810
EcoT14I	CCWWGG	1 cut(s)	519
ErhI	CCWWGG	1 cut(s)	519
FaeI	CATG	1 cut(s)	780
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	1 cut(s)	776
FauI	CCCGC	1 cut(s)	68
Fnu4HI	GCNGC	7 cut(s)	250, 316, 319, 525, 555, 687, 756
FokI	GGATG	3 cut(s)	170, 524, 784
Fsp4HI	GCNGC	7 cut(s)	250, 316, 319, 525, 555, 687, 756
GlaI	GCGC	1 cut(s)	608
GluI	GCNGC	7 cut(s)	250, 316, 319, 525, 555, 687, 756
GsaI	CCCAGC	2 cut(s)	531, 771
HaeII	RGCGCY	1 cut(s)	610
HaeIII	GGCC	2 cut(s)	361, 518
HapII	CCGG	2 cut(s)	389, 471
HgaI	GACGC	2 cut(s)	169, 233
HhaI	GCGC	1 cut(s)	609
Hin1I	GRCGYC	3 cut(s)	5, 180, 225
Hin1II	CATG	1 cut(s)	780
Hin6I	GCGC	1 cut(s)	607
HinP1I	GCGC	1 cut(s)	607
HindIII	AAGCTT	1 cut(s)	213
HinfI	GANTC	2 cut(s)	191, 696
HpaII	CCGG	2 cut(s)	389, 471
HphI	GGTGA	1 cut(s)	650
Hpy166II	GTNNAC	1 cut(s)	369
Hpy188I	TCNGA	3 cut(s)	74, 196, 303
Hpy188III	TCNNGA	7 cut(s)	379, 389, 431, 471, 584, 620, 842
Hpy8I	GTNNAC	1 cut(s)	369
Hpy99I	CGWCG	4 cut(s)	111, 179, 227, 367
HpyAV	CCTTC	3 cut(s)	238, 643, 678
HpyCH4III	ACNGT	3 cut(s)	478, 737, 895
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	3 cut(s)	205, 554, 827
HpyF10VI	GCNNNNNNNGC	3 cut(s)	331, 524, 764
HpyF3I	CTNAG	4 cut(s)	261, 444, 568, 706
HpySE526I	ACGT	1 cut(s)	243
Hsp92I	GRCGYC	3 cut(s)	5, 180, 225
Hsp92II	CATG	1 cut(s)	780
HspAI	GCGC	1 cut(s)	607
KflI	GGGWCCC	1 cut(s)	277
Kpn2I	TCCGGA	2 cut(s)	388, 470
Kzo9I	GATC	2 cut(s)	12, 414
LmnI	GCTCC	1 cut(s)	257
Lsp1109I	GCAGC	5 cut(s)	236, 536, 566, 673, 767
LweI	GCATC	1 cut(s)	814
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	1 cut(s)	851
MalI	GATC	2 cut(s)	14, 416
MboI	GATC	2 cut(s)	12, 414
MboII	GAAGA	6 cut(s)	15, 129, 367, 404, 419, 789
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	3 cut(s)	459, 875, 904
MlyI	GAGTC	2 cut(s)	200, 690
MroI	TCCGGA	2 cut(s)	388, 470
MseI	TTAA	2 cut(s)	345, 819
MspA1I	CMGCKG	4 cut(s)	249, 527, 686, 806
MspI	CCGG	2 cut(s)	389, 471
MspR9I	CCNGG	2 cut(s)	492, 812
MvaI	CCWGG	2 cut(s)	492, 812
MwoI	GCNNNNNNNGC	3 cut(s)	331, 524, 764
NdeII	GATC	2 cut(s)	12, 414
NlaIII	CATG	1 cut(s)	780
NlaIV	GGNNCC	3 cut(s)	278, 279, 483
PaeR7I	CTCGAG	1 cut(s)	188
PflFI	GACNNNGTC	1 cut(s)	179
PkrI	GCNGC	7 cut(s)	251, 317, 320, 526, 556, 688, 757
PleI	GAGTC	2 cut(s)	199, 690
PpsI	GAGTC	2 cut(s)	199, 690
PpuMI	RGGWCCY	1 cut(s)	277
Psp5II	RGGWCCY	1 cut(s)	277
Psp6I	CCWGG	2 cut(s)	490, 810
PspFI	CCCAGC	2 cut(s)	527, 767
PspGI	CCWGG	2 cut(s)	490, 810
PspN4I	GGNNCC	3 cut(s)	278, 279, 483
PspPI	GGNCC	1 cut(s)	277
PspPPI	RGGWCCY	1 cut(s)	277
PspXI	VCTCGAGB	1 cut(s)	188
PstI	CTGCAG	1 cut(s)	556
PsyI	GACNNNGTC	1 cut(s)	179
PvuII	CAGCTG	3 cut(s)	527, 686, 806
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
SaqAI	TTAA	2 cut(s)	345, 819
SatI	GCNGC	7 cut(s)	250, 316, 319, 525, 555, 687, 756
Sau3AI	GATC	2 cut(s)	12, 414
Sau96I	GGNCC	1 cut(s)	277
SchI	GAGTC	2 cut(s)	200, 690
ScrFI	CCNGG	2 cut(s)	492, 812
SduI	GDGCHC	1 cut(s)	201
SfaNI	GCATC	1 cut(s)	814
SfcI	CTRYAG	2 cut(s)	552, 749
Sfr274I	CTCGAG	1 cut(s)	188
SinI	GGWCC	1 cut(s)	277
SlaI	CTCGAG	1 cut(s)	188
SmlI	CTYRAG	2 cut(s)	188, 847
SmoI	CTYRAG	2 cut(s)	188, 847
Sse9I	AATT	3 cut(s)	459, 875, 904
SsiI	CCGC	6 cut(s)	61, 208, 247, 315, 318, 334
StyD4I	CCNGG	2 cut(s)	490, 810
StyI	CCWWGG	1 cut(s)	519
TaaI	ACNGT	3 cut(s)	478, 737, 895
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	6 cut(s)	11, 168, 189, 378, 406, 420
TasI	AATT	3 cut(s)	459, 875, 904
TauI	GCSGC	2 cut(s)	318, 321
Tru1I	TTAA	2 cut(s)	345, 819
Tru9I	TTAA	2 cut(s)	345, 819
TscAI	CASTG	1 cut(s)	742
TseI	GCWGC	5 cut(s)	249, 524, 554, 686, 755
TspRI	CASTG	1 cut(s)	742
Tth111I	GACNNNGTC	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	277
XhoI	CTCGAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.