Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007382

Physical Location & Seq

Genomic Coordinates Forward (+)

33910415 .. 33913611

Gene Structure 3197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1322100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGCGTGTATCACGATTCCTCTCTCTTCCTCCTCCTCTTCCTCTTTTATACTCTCACACACAACCCTCGTTCGGTTCCGAACCCCCAGAAATCTTTCCATCTCCTCCACACGAAAGCGGCTCTCACTCTCAGTTTCGGTCTCAGCTTCCTCCTCTGCTCTCCAAGCTCTGATTTTCGACTGCGACGGCGTAATACTCGAGTCCGAGCACTTGCACCGCCAAGCTTACAACGAGGCCTTCGCTCACTTCAATGTCCGCTGCTCTTCCTCTGCCTCTCAACCCCTCAACTGGGACCTCCACTTCTACGATCAGCTCCAGAACCAAATCGGCGGTGGCAAACCCAAAATGCGATGGTACTTTAAGGAGCACGGTTGGCCGTCGTCCACAATCTTCGAGAAGCCTCCGGAAGACGATGAGGGCCGAGCCAAGATCATTGATACTATTCAGGATTGGAAAACTGAAAGGTACAAAGAAATTATCAAATCCGGAACTGTGGAACCAAGACCAGGAGTTATAAGATTGATGGATGAGGCCAAGGCTTCTGGGAAAAAGCTTGCTGTTTGCTCTGCAGCAACTAAAAGTTCAGTAATTCTGTGTCTTGAAAACCTTATAGGAATTGAGCGTTTTCAGGGTCTTGATTGCTTCCTTGCTGGTGATGATGTAAAGGAAAAAAAGCCTGATCCTTTGATTTATATTACTGCTGCCAAGAGACTTGGAGTCTCGGAGAAAGATTGTTTGGTCGTGGAGGACAGTGTTATTGGTCTACAGGCAGCAACAAAAGCTGGGATGTCATGTGTCATTACCTACACCTCTTCAACAGCTGAGCAGGATTTCAAAGATGCAATAGCAATCTACCCTGACTTGAGTAGCATAAGGCTGAAAGACTTGGAATTGTTACTTCAAAACGCTGCCATTGCCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

308

Amino Acids

33.88

Weight (kDa)

6.6

Isoelectric Point (pI)

44.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	55 - 262	2.1e-24	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	58 - 266	7.7e-21	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39970
fragaria_vesca	FvH4_1g20570 FvH4_1g20570 FvH4_1g20570 FvH4_1g20570 FvH4_1g20570 FvH4_6g52570 FvH4_6g52570
malus_domestica	MD15G1322100.v1.1
prunus_persica	Prupe.6G190700_v2.0.a1 Prupe.6G190700_v2.0.a1
pyrus_communis	pycom15g28300
rosa_chinensis	RchiOBHm_Chr2g0112791
rosa_laevigata	RLG00000018010
rosa_multiflora	Rmu_co8125272.1_g000001 Rmu_sc0001708.1_g000020 Rmu_sc0002351.1_g000008
rosa_roxburghii	Rroxscaffold_2G00131140
rosa_rugosa	Rorug02G0182700
rosa_samantha	Rh2AG237400 Rh2BG250100 Rh2CG241300 Rh2DG244800
rosa_wichuraiana	Rw2G018360 Rw2G018550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	515
AccI	GTMKAC	1 cut(s)	763
AccIII	TCCGGA	2 cut(s)	403, 485
AciI	CCGC	4 cut(s)	118, 217, 256, 330
AclWI	GGATC	1 cut(s)	674
AcoI	YGGCCR	1 cut(s)	374
AfaI	GTAC	2 cut(s)	356, 467
AfiI	CCNNNNNNNGG	4 cut(s)	72, 288, 289, 506
AgsI	TTSAA	5 cut(s)	250, 602, 816, 835, 902
AhdI	GACNNNNNGTC	1 cut(s)	716
AjnI	CCWGG	1 cut(s)	505
AjuI	GAANNNNNNNTTGG	2 cut(s)	719, 751
AluBI	AGCT	7 cut(s)	146, 167, 224, 313, 553, 782, 821
AluI	AGCT	7 cut(s)	146, 167, 224, 313, 553, 782, 821
Alw21I	GWGCWC	2 cut(s)	210, 369
Alw26I	GTCTC	3 cut(s)	145, 703, 724
AlwI	GGATC	1 cut(s)	674
Ama87I	CYCGRG	1 cut(s)	197
Aor13HI	TCCGGA	2 cut(s)	403, 485
AoxI	GGCC	4 cut(s)	234, 374, 418, 531
ApeKI	GCWGC	5 cut(s)	258, 569, 701, 770, 908
Asp700I	GAANNNNTTC	1 cut(s)	94
AspS9I	GGNCC	2 cut(s)	292, 418
AsuHPI	GGTGA	1 cut(s)	665
AvaI	CYCGRG	1 cut(s)	197
AvaII	GGWCC	1 cut(s)	292
BbsI	GAAGAC	1 cut(s)	414
Bbv12I	GWGCWC	2 cut(s)	210, 369
BbvI	GCAGC	5 cut(s)	245, 581, 688, 782, 895
BccI	CCATC	3 cut(s)	107, 345, 517
BceAI	ACGGC	2 cut(s)	202, 361
BciT130I	CCWGG	1 cut(s)	507
BcoDI	GTCTC	3 cut(s)	145, 703, 724
BfmI	CTRYAG	2 cut(s)	567, 764
BisI	GCNGC	6 cut(s)	119, 259, 570, 702, 771, 909
BlpI	GCTNAGC	1 cut(s)	822
BlsI	GCNGC	6 cut(s)	120, 260, 571, 703, 772, 910
Bme1390I	CCNGG	1 cut(s)	507
Bme18I	GGWCC	1 cut(s)	292
BmeRI	GACNNNNNGTC	1 cut(s)	716
BmeT110I	CYCGRG	1 cut(s)	197
BmgT120I	GGNCC	2 cut(s)	292, 418
BmiI	GGNNCC	3 cut(s)	77, 293, 498
BmrFI	CCNGG	1 cut(s)	507
BmrI	ACTGGG	1 cut(s)	298
BmsI	GCATC	1 cut(s)	829
BmuI	ACTGGG	1 cut(s)	298
BpiI	GAAGAC	1 cut(s)	414
BpmI	CTGGAG	1 cut(s)	299
Bpu1102I	GCTNAGC	1 cut(s)	822
BpuEI	CTTGAG	1 cut(s)	883
BsaI	GGTCTC	1 cut(s)	145
BsaJI	CCNNGG	1 cut(s)	534
BsaWI	WCCGGW	2 cut(s)	403, 485
Bsc4I	CCNNNNNNNGG	4 cut(s)	72, 288, 289, 506
Bse1I	ACTGG	1 cut(s)	293
Bse3DI	GCAATG	1 cut(s)	912
BseAI	TCCGGA	2 cut(s)	403, 485
BseBI	CCWGG	1 cut(s)	507
BseDI	CCNNGG	1 cut(s)	534
BseGI	GGATG	2 cut(s)	532, 792
BseLI	CCNNNNNNNGG	4 cut(s)	72, 288, 289, 506
BseMI	GCAATG	1 cut(s)	912
BseMII	CTCAG	3 cut(s)	144, 156, 813
BseNI	ACTGG	1 cut(s)	293
BseRI	GAGGAG	4 cut(s)	22, 25, 94, 142
BseXI	GCAGC	5 cut(s)	245, 581, 688, 782, 895
BseYI	CCCAGC	1 cut(s)	782
BshFI	GGCC	4 cut(s)	236, 376, 420, 533
BsiHKAI	GWGCWC	2 cut(s)	210, 369
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	2 cut(s)	404, 486
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	4 cut(s)	72, 288, 289, 506
BsmAI	GTCTC	3 cut(s)	145, 703, 724
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	4 cut(s)	236, 376, 420, 533
Bso31I	GGTCTC	1 cut(s)	145
BsoBI	CYCGRG	1 cut(s)	197
Bsp1286I	GDGCHC	2 cut(s)	210, 369
Bsp13I	TCCGGA	2 cut(s)	403, 485
Bsp143I	GATC	3 cut(s)	307, 429, 679
Bsp1720I	GCTNAGC	1 cut(s)	822
BspACI	CCGC	4 cut(s)	118, 217, 256, 330
BspANI	GGCC	4 cut(s)	236, 376, 420, 533
BspCNI	CTCAG	3 cut(s)	143, 155, 814
BspEI	TCCGGA	2 cut(s)	403, 485
BspLI	GGNNCC	3 cut(s)	77, 293, 498
BspMAI	CTGCAG	1 cut(s)	571
BspPI	GGATC	1 cut(s)	674
BspQI	GCTCTTC	1 cut(s)	268
BspTNI	GGTCTC	1 cut(s)	145
BsrDI	GCAATG	1 cut(s)	912
BsrI	ACTGG	1 cut(s)	293
BssECI	CCNNGG	1 cut(s)	534
BssMI	GATC	3 cut(s)	307, 429, 679
BssT1I	CCWWGG	1 cut(s)	534
Bst2UI	CCWGG	1 cut(s)	507
Bst4CI	ACNGT	3 cut(s)	371, 493, 752
Bst6I	CTCTTC	4 cut(s)	31, 43, 268, 817
BstC8I	GCNNGC	1 cut(s)	555
BstDEI	CTNAG	3 cut(s)	130, 142, 822
BstF5I	GGATG	2 cut(s)	532, 792
BstKTI	GATC	3 cut(s)	310, 432, 682
BstMAI	GTCTC	3 cut(s)	145, 703, 724
BstMBI	GATC	3 cut(s)	307, 429, 679
BstMWI	GCNNNNNNNGC	4 cut(s)	164, 373, 779, 914
BstNI	CCWGG	1 cut(s)	507
BstSCI	CCNGG	1 cut(s)	505
BstSFI	CTRYAG	2 cut(s)	567, 764
BstV1I	GCAGC	5 cut(s)	245, 581, 688, 782, 895
BstV2I	GAAGAC	1 cut(s)	414
BsuRI	GGCC	4 cut(s)	236, 376, 420, 533
BtgZI	GCGATG	1 cut(s)	364
BtsCI	GGATG	2 cut(s)	532, 792
BtsIMutI	CAGTG	1 cut(s)	757
Cac8I	GCNNGC	1 cut(s)	555
Cfr13I	GGNCC	2 cut(s)	292, 418
Csp6I	GTAC	2 cut(s)	355, 466
CviAII	CATG	1 cut(s)	792
CviQI	GTAC	2 cut(s)	355, 466
DdeI	CTNAG	3 cut(s)	130, 142, 822
DpnI	GATC	3 cut(s)	309, 431, 681
DpnII	GATC	3 cut(s)	307, 429, 679
DriI	GACNNNNNGTC	1 cut(s)	716
EaeI	YGGCCR	1 cut(s)	374
Eam1104I	CTCTTC	4 cut(s)	31, 43, 268, 817
Eam1105I	GACNNNNNGTC	1 cut(s)	716
EarI	CTCTTC	4 cut(s)	31, 43, 268, 817
Eco130I	CCWWGG	1 cut(s)	534
Eco147I	AGGCCT	1 cut(s)	236
Eco31I	GGTCTC	1 cut(s)	145
Eco47I	GGWCC	1 cut(s)	292
Eco88I	CYCGRG	1 cut(s)	197
EcoO109I	RGGNCCY	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	505
EcoT14I	CCWWGG	1 cut(s)	534
ErhI	CCWWGG	1 cut(s)	534
FaeI	CATG	1 cut(s)	795
FaiI	YATR	6 cut(s)	50, 515, 611, 693, 793, 872
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	1 cut(s)	791
FblI	GTMKAC	1 cut(s)	763
Fnu4HI	GCNGC	6 cut(s)	119, 259, 570, 702, 771, 909
FokI	GGATG	2 cut(s)	539, 799
Fsp4HI	GCNGC	6 cut(s)	119, 259, 570, 702, 771, 909
GluI	GCNGC	6 cut(s)	119, 259, 570, 702, 771, 909
GsaI	CCCAGC	1 cut(s)	786
GsuI	CTGGAG	1 cut(s)	299
HaeIII	GGCC	4 cut(s)	236, 376, 420, 533
HapII	CCGG	2 cut(s)	404, 486
Hin1II	CATG	1 cut(s)	795
HindIII	AAGCTT	2 cut(s)	222, 551
HinfI	GANTC	3 cut(s)	16, 200, 717
HpaII	CCGG	2 cut(s)	404, 486
HphI	GGTGA	1 cut(s)	665
Hpy166II	GTNNAC	2 cut(s)	384, 764
Hpy188I	TCNGA	4 cut(s)	80, 171, 205, 724
Hpy188III	TCNNGA	8 cut(s)	13, 316, 394, 404, 446, 486, 599, 635
Hpy8I	GTNNAC	2 cut(s)	384, 764
Hpy99I	CGWCG	2 cut(s)	188, 382
HpyAV	CCTTC	1 cut(s)	247
HpyCH4III	ACNGT	3 cut(s)	371, 493, 752
HpyCH4V	TGCA	3 cut(s)	214, 569, 842
HpyF10VI	GCNNNNNNNGC	4 cut(s)	164, 373, 779, 914
HpyF3I	CTNAG	3 cut(s)	130, 142, 822
Hsp92II	CATG	1 cut(s)	795
Kpn2I	TCCGGA	2 cut(s)	403, 485
Kzo9I	GATC	3 cut(s)	307, 429, 679
LguI	GCTCTTC	1 cut(s)	268
LmnI	GCTCC	2 cut(s)	318, 364
Lsp1109I	GCAGC	5 cut(s)	245, 581, 688, 782, 895
LweI	GCATC	1 cut(s)	829
MaeIII	GTNAC	1 cut(s)	894
MalI	GATC	3 cut(s)	309, 431, 681
MboI	GATC	3 cut(s)	307, 429, 679
MboII	GAAGA	6 cut(s)	18, 30, 255, 382, 419, 804
MhlI	GDGCHC	2 cut(s)	210, 369
MluCI	AATT	5 cut(s)	474, 588, 615, 890, 919
MlyI	GAGTC	2 cut(s)	209, 726
MroI	TCCGGA	2 cut(s)	403, 485
MroXI	GAANNNNTTC	1 cut(s)	94
MseI	TTAA	1 cut(s)	360
MslI	CAYNNNNRTG	1 cut(s)	249
MspA1I	CMGCKG	2 cut(s)	258, 821
MspI	CCGG	2 cut(s)	404, 486
MspR9I	CCNGG	1 cut(s)	507
MvaI	CCWGG	1 cut(s)	507
MwoI	GCNNNNNNNGC	4 cut(s)	164, 373, 779, 914
NdeII	GATC	3 cut(s)	307, 429, 679
NlaIII	CATG	1 cut(s)	795
NlaIV	GGNNCC	3 cut(s)	77, 293, 498
NmeAIII	GCCGAG	1 cut(s)	446
PaeR7I	CTCGAG	1 cut(s)	197
PceI	AGGCCT	1 cut(s)	236
PciSI	GCTCTTC	1 cut(s)	268
PdmI	GAANNNNTTC	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	16
PkrI	GCNGC	6 cut(s)	120, 260, 571, 703, 772, 910
PleI	GAGTC	2 cut(s)	208, 725
PpsI	GAGTC	2 cut(s)	208, 725
PpuMI	RGGWCCY	1 cut(s)	292
PsiI	TTATAA	1 cut(s)	515
Psp5II	RGGWCCY	1 cut(s)	292
Psp6I	CCWGG	1 cut(s)	505
PspFI	CCCAGC	1 cut(s)	782
PspGI	CCWGG	1 cut(s)	505
PspN4I	GGNNCC	3 cut(s)	77, 293, 498
PspPI	GGNCC	2 cut(s)	292, 418
PspPPI	RGGWCCY	1 cut(s)	292
PspXI	VCTCGAGB	1 cut(s)	197
PstI	CTGCAG	1 cut(s)	571
PvuII	CAGCTG	1 cut(s)	821
RsaI	GTAC	2 cut(s)	356, 467
RsaNI	GTAC	2 cut(s)	355, 466
RseI	CAYNNNNRTG	1 cut(s)	249
SapI	GCTCTTC	1 cut(s)	268
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	6 cut(s)	119, 259, 570, 702, 771, 909
Sau3AI	GATC	3 cut(s)	307, 429, 679
Sau96I	GGNCC	2 cut(s)	292, 418
SchI	GAGTC	2 cut(s)	209, 726
ScrFI	CCNGG	1 cut(s)	507
SduI	GDGCHC	2 cut(s)	210, 369
SfaNI	GCATC	1 cut(s)	829
SfcI	CTRYAG	2 cut(s)	567, 764
Sfr274I	CTCGAG	1 cut(s)	197
SinI	GGWCC	1 cut(s)	292
SlaI	CTCGAG	1 cut(s)	197
SmiMI	CAYNNNNRTG	1 cut(s)	249
SmlI	CTYRAG	2 cut(s)	197, 862
SmoI	CTYRAG	2 cut(s)	197, 862
Sse9I	AATT	5 cut(s)	474, 588, 615, 890, 919
SseBI	AGGCCT	1 cut(s)	236
SsiI	CCGC	4 cut(s)	118, 217, 256, 330
StuI	AGGCCT	1 cut(s)	236
StyD4I	CCNGG	1 cut(s)	505
StyI	CCWWGG	1 cut(s)	534
TaaI	ACNGT	3 cut(s)	371, 493, 752
TaqI	TCGA	3 cut(s)	177, 198, 393
TaqII	GACCGA	1 cut(s)	127
TasI	AATT	5 cut(s)	474, 588, 615, 890, 919
TauI	GCSGC	1 cut(s)	121
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TscAI	CASTG	1 cut(s)	757
TseI	GCWGC	5 cut(s)	258, 569, 701, 770, 908
TspRI	CASTG	1 cut(s)	757
VpaK11BI	GGWCC	1 cut(s)	292
XcmI	CCANNNNNNNNNTGG	1 cut(s)	329
XhoI	CTCGAG	1 cut(s)	197
XmiI	GTMKAC	1 cut(s)	763
XmnI	GAANNNNTTC	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.