Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007382

Physical Location & Seq

Genomic Coordinates Forward (+)

24403481 .. 24406136

Gene Structure 2656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018010

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGCGCACACCATGGCTCTCTCATCCCCTTCCTCCTCTTTTCTACTCTCCCACACCACCCGCCTTCACTTCCGAAGCCCCAGAAATCTCTCCACCCCCACACGACGACCTCTCTCACTCTCAGTCTCAGCTTCTTCCTCTGCCTCTCTCCAAGCCTTGATTTTCGACTGCGACGGCGTCATCCTCGAGTCGGAGCACTTGCACCGCCAAGCTTACAACGACGCCTTCGCTCACTTCAACGTCCGGTGCTCCTCTCAGACCCTCAATTGGGACCCCGAGTTCTACGACCAGCTCCAGAACCAAATCGGCGGCGGCAAGCCCAAAATGCGATGGTACTTTAAGGAGAACGGGTGGCCGTCGTCCACCATTTTCGAGAAGCCTCCAGAAGACGATGAGGGCCGAGCCAAGATCATCGACACTCTTCAGGATTGGAAAACTGAGAGGTACAAAGAAATTATCAAGTCCGGAACTGTGGAACCAAGACCAGGAGTTTTGAGATTAATGGATGAGGCCAAGGCCGCTGGAAAAAAGCTCGCTGTTTGCTCTGCAGCTACTAAGAGTTCAGTTATATTATGTCTTGAAAGCCTTATAGGAAATGAGCGCTTTCAAGGTCTTGATTGCTTTCTTGCTGACACATGTTGTGACTTATTGCTCCACTTATCAGCATGTGATCTCATACTCGGAATCTCAGTAAGAGATTGTTTGGTTGTGGAGGACAGTGTTATTGGGCTACAGGCAGCAACAAGAGCTGGGATGTCCTGTGTGATTAGCTATACATCTTCAACAGCTGACCAGGATTTTAAAGATGCAATAGCAATATATCCCGACTTGAGTAACATACGACTGAAAGACTTGGAATTATTACTTCAAAATGCTGTCACTGCCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

297

Amino Acids

32.72

Weight (kDa)

5.67

Isoelectric Point (pI)

49.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	51 - 251	4.6e-14	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	54 - 255	4e-09	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39970
fragaria_vesca	FvH4_1g20570 FvH4_1g20570 FvH4_1g20570 FvH4_1g20570 FvH4_1g20570 FvH4_6g52570 FvH4_6g52570
malus_domestica	MD15G1322100.v1.1
prunus_persica	Prupe.6G190700_v2.0.a1 Prupe.6G190700_v2.0.a1
pyrus_communis	pycom15g28300
rosa_chinensis	RchiOBHm_Chr2g0112791
rosa_laevigata	RLG00000018010
rosa_multiflora	Rmu_co8125272.1_g000001 Rmu_sc0001708.1_g000020 Rmu_sc0002351.1_g000008
rosa_roxburghii	Rroxscaffold_2G00131140
rosa_rugosa	Rorug02G0182700
rosa_samantha	Rh2AG237400 Rh2BG250100 Rh2CG241300 Rh2DG244800
rosa_wichuraiana	Rw2G018360 Rw2G018550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	464
AciI	CCGC	5 cut(s)	61, 205, 309, 312, 519
AcoI	YGGCCR	1 cut(s)	353
AcuI	CTGAAG	1 cut(s)	407
AcyI	GRCGYC	2 cut(s)	177, 222
AfaI	GTAC	2 cut(s)	335, 446
AfeI	AGCGCT	1 cut(s)	602
AfiI	CCNNNNNNNGG	4 cut(s)	190, 267, 268, 485
AflIII	ACRYGT	1 cut(s)	635
AgsI	TTSAA	5 cut(s)	238, 581, 608, 783, 869
AjnI	CCWGG	2 cut(s)	484, 792
AloI	GAACNNNNNNTCC	2 cut(s)	263, 295
AluBI	AGCT	8 cut(s)	131, 212, 292, 532, 551, 749, 771, 788
AluI	AGCT	8 cut(s)	131, 212, 292, 532, 551, 749, 771, 788
Alw21I	GWGCWC	2 cut(s)	198, 251
Alw26I	GTCTC	1 cut(s)	130
Ama87I	CYCGRG	2 cut(s)	185, 275
Aor13HI	TCCGGA	1 cut(s)	464
Aor51HI	AGCGCT	1 cut(s)	602
AoxI	GGCC	4 cut(s)	353, 397, 510, 516
ApeKI	GCWGC	2 cut(s)	548, 737
AseI	ATTAAT	1 cut(s)	500
AspLEI	GCGC	2 cut(s)	7, 603
AspS9I	GGNCC	2 cut(s)	271, 397
AvaI	CYCGRG	2 cut(s)	185, 275
AvaII	GGWCC	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	393
Bbv12I	GWGCWC	2 cut(s)	198, 251
BbvI	GCAGC	2 cut(s)	560, 749
BccI	CCATC	1 cut(s)	324
BceAI	ACGGC	2 cut(s)	190, 340
BciT130I	CCWGG	2 cut(s)	486, 794
BcoDI	GTCTC	1 cut(s)	130
BfmI	CTRYAG	2 cut(s)	546, 731
BfoI	RGCGCY	1 cut(s)	604
BisI	GCNGC	5 cut(s)	310, 313, 519, 549, 738
BlsI	GCNGC	5 cut(s)	311, 314, 520, 550, 739
Bme1390I	CCNGG	2 cut(s)	486, 794
Bme18I	GGWCC	1 cut(s)	271
BmeT110I	CYCGRG	2 cut(s)	185, 275
BmgT120I	GGNCC	2 cut(s)	271, 397
BmiI	GGNNCC	3 cut(s)	272, 273, 477
BmrFI	CCNGG	2 cut(s)	486, 794
BmsI	GCATC	1 cut(s)	796
BpiI	GAAGAC	1 cut(s)	393
BpmI	CTGGAG	2 cut(s)	278, 366
BpuEI	CTTGAG	1 cut(s)	850
BsaHI	GRCGYC	2 cut(s)	177, 222
BsaJI	CCNNGG	2 cut(s)	12, 513
BsaWI	WCCGGW	2 cut(s)	243, 464
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bsc4I	CCNNNNNNNGG	4 cut(s)	190, 267, 268, 485
BseAI	TCCGGA	1 cut(s)	464
BseBI	CCWGG	2 cut(s)	486, 794
BseDI	CCNNGG	2 cut(s)	12, 513
BseGI	GGATG	4 cut(s)	23, 180, 511, 759
BseLI	CCNNNNNNNGG	4 cut(s)	190, 267, 268, 485
BseMII	CTCAG	5 cut(s)	135, 141, 269, 429, 702
BseRI	GAGGAG	2 cut(s)	25, 241
BseXI	GCAGC	2 cut(s)	560, 749
BseYI	CCCAGC	1 cut(s)	749
BshFI	GGCC	4 cut(s)	355, 399, 512, 518
BsiHKAI	GWGCWC	2 cut(s)	198, 251
BsiHKCI	CYCGRG	2 cut(s)	185, 275
BsiSI	CCGG	2 cut(s)	244, 465
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	4 cut(s)	190, 267, 268, 485
BsmAI	GTCTC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	284
BsnI	GGCC	4 cut(s)	355, 399, 512, 518
BsoBI	CYCGRG	2 cut(s)	185, 275
Bsp1286I	GDGCHC	2 cut(s)	198, 251
Bsp13I	TCCGGA	1 cut(s)	464
Bsp143I	GATC	2 cut(s)	408, 670
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	5 cut(s)	61, 205, 309, 312, 519
BspANI	GGCC	4 cut(s)	355, 399, 512, 518
BspCNI	CTCAG	5 cut(s)	134, 140, 268, 430, 701
BspEI	TCCGGA	1 cut(s)	464
BspLI	GGNNCC	3 cut(s)	272, 273, 477
BspMAI	CTGCAG	1 cut(s)	550
BssECI	CCNNGG	2 cut(s)	12, 513
BssMI	GATC	2 cut(s)	408, 670
BssNI	GRCGYC	2 cut(s)	177, 222
BssT1I	CCWWGG	2 cut(s)	12, 513
Bst2UI	CCWGG	2 cut(s)	486, 794
Bst4CI	ACNGT	2 cut(s)	472, 719
Bst6I	CTCTTC	1 cut(s)	426
BstACI	GRCGYC	2 cut(s)	177, 222
BstC8I	GCNNGC	2 cut(s)	317, 534
BstDEI	CTNAG	6 cut(s)	121, 127, 255, 438, 555, 688
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	4 cut(s)	23, 180, 511, 759
BstH2I	RGCGCY	1 cut(s)	604
BstHHI	GCGC	2 cut(s)	7, 603
BstKTI	GATC	2 cut(s)	411, 673
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	2 cut(s)	408, 670
BstMWI	GCNNNNNNNGC	4 cut(s)	325, 518, 746, 881
BstNI	CCWGG	2 cut(s)	486, 794
BstNSI	RCATGY	2 cut(s)	639, 669
BstSCI	CCNGG	2 cut(s)	484, 792
BstSFI	CTRYAG	2 cut(s)	546, 731
BstV1I	GCAGC	2 cut(s)	560, 749
BstV2I	GAAGAC	1 cut(s)	393
BsuRI	GGCC	4 cut(s)	355, 399, 512, 518
BtgI	CCRYGG	1 cut(s)	12
BtgZI	GCGATG	1 cut(s)	343
BtsCI	GGATG	4 cut(s)	23, 180, 511, 759
BtsI	GCAGTG	1 cut(s)	879
BtsIMutI	CAGTG	2 cut(s)	724, 879
Cac8I	GCNNGC	2 cut(s)	317, 534
CfoI	GCGC	2 cut(s)	7, 603
Cfr13I	GGNCC	2 cut(s)	271, 397
CseI	GACGC	2 cut(s)	166, 230
Csp6I	GTAC	2 cut(s)	334, 445
CviAII	CATG	3 cut(s)	13, 636, 666
CviQI	GTAC	2 cut(s)	334, 445
DdeI	CTNAG	6 cut(s)	121, 127, 255, 438, 555, 688
DpnI	GATC	2 cut(s)	410, 672
DpnII	GATC	2 cut(s)	408, 670
DraI	TTTAAA	1 cut(s)	802
EaeI	YGGCCR	1 cut(s)	353
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
Eco130I	CCWWGG	2 cut(s)	12, 513
Eco47I	GGWCC	1 cut(s)	271
Eco47III	AGCGCT	1 cut(s)	602
Eco57I	CTGAAG	1 cut(s)	407
Eco88I	CYCGRG	2 cut(s)	185, 275
EcoO109I	RGGNCCY	1 cut(s)	271
EcoRII	CCWGG	2 cut(s)	484, 792
EcoT14I	CCWWGG	2 cut(s)	12, 513
ErhI	CCWWGG	2 cut(s)	12, 513
FaeI	CATG	3 cut(s)	16, 639, 669
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	3 cut(s)	12, 635, 665
FauI	CCCGC	1 cut(s)	68
Fnu4HI	GCNGC	5 cut(s)	310, 313, 519, 549, 738
FokI	GGATG	4 cut(s)	10, 167, 518, 766
Fsp4HI	GCNGC	5 cut(s)	310, 313, 519, 549, 738
GlaI	GCGC	2 cut(s)	6, 602
GluI	GCNGC	5 cut(s)	310, 313, 519, 549, 738
GsaI	CCCAGC	1 cut(s)	753
GsuI	CTGGAG	2 cut(s)	278, 366
HaeII	RGCGCY	1 cut(s)	604
HaeIII	GGCC	4 cut(s)	355, 399, 512, 518
HapII	CCGG	2 cut(s)	244, 465
HgaI	GACGC	2 cut(s)	166, 230
HhaI	GCGC	2 cut(s)	7, 603
Hin1I	GRCGYC	2 cut(s)	177, 222
Hin1II	CATG	3 cut(s)	16, 639, 669
Hin6I	GCGC	2 cut(s)	5, 601
HinP1I	GCGC	2 cut(s)	5, 601
HindIII	AAGCTT	1 cut(s)	210
HinfI	GANTC	2 cut(s)	188, 684
HpaII	CCGG	2 cut(s)	244, 465
Hpy166II	GTNNAC	1 cut(s)	363
Hpy188I	TCNGA	4 cut(s)	74, 193, 258, 683
Hpy188III	TCNNGA	8 cut(s)	295, 373, 383, 425, 465, 578, 614, 824
Hpy8I	GTNNAC	1 cut(s)	363
Hpy99I	CGWCG	4 cut(s)	108, 176, 224, 361
HpyAV	CCTTC	3 cut(s)	39, 74, 235
HpyCH4III	ACNGT	2 cut(s)	472, 719
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	3 cut(s)	202, 548, 809
HpyF10VI	GCNNNNNNNGC	4 cut(s)	325, 518, 746, 881
HpyF3I	CTNAG	6 cut(s)	121, 127, 255, 438, 555, 688
HpySE526I	ACGT	1 cut(s)	240
Hsp92I	GRCGYC	2 cut(s)	177, 222
Hsp92II	CATG	3 cut(s)	16, 639, 669
HspAI	GCGC	2 cut(s)	5, 601
KflI	GGGWCCC	1 cut(s)	271
Kpn2I	TCCGGA	1 cut(s)	464
Kzo9I	GATC	2 cut(s)	408, 670
LmnI	GCTCC	4 cut(s)	193, 254, 297, 657
Lsp1109I	GCAGC	2 cut(s)	560, 749
LweI	GCATC	1 cut(s)	796
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	3 cut(s)	641, 833, 877
MalI	GATC	2 cut(s)	410, 672
MboI	GATC	2 cut(s)	408, 670
MboII	GAAGA	4 cut(s)	126, 398, 413, 771
MfeI	CAATTG	1 cut(s)	265
MhlI	GDGCHC	2 cut(s)	198, 251
MluCI	AATT	4 cut(s)	265, 453, 857, 886
MlyI	GAGTC	1 cut(s)	197
MmeI	TCCRAC	1 cut(s)	171
MroI	TCCGGA	1 cut(s)	464
MseI	TTAA	3 cut(s)	339, 500, 801
MspA1I	CMGCKG	2 cut(s)	521, 788
MspI	CCGG	2 cut(s)	244, 465
MspR9I	CCNGG	2 cut(s)	486, 794
MunI	CAATTG	1 cut(s)	265
MvaI	CCWGG	2 cut(s)	486, 794
MwoI	GCNNNNNNNGC	4 cut(s)	325, 518, 746, 881
NcoI	CCATGG	1 cut(s)	12
NdeII	GATC	2 cut(s)	408, 670
NlaIII	CATG	3 cut(s)	16, 639, 669
NlaIV	GGNNCC	3 cut(s)	272, 273, 477
NmeAIII	GCCGAG	1 cut(s)	425
NmuCI	GTSAC	2 cut(s)	641, 877
NspI	RCATGY	2 cut(s)	639, 669
PaeR7I	CTCGAG	1 cut(s)	185
PciI	ACATGT	1 cut(s)	635
PfeI	GAWTC	1 cut(s)	684
PflFI	GACNNNGTC	1 cut(s)	176
PkrI	GCNGC	5 cut(s)	311, 314, 520, 550, 739
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
PpuMI	RGGWCCY	1 cut(s)	271
PscI	ACATGT	1 cut(s)	635
PshBI	ATTAAT	1 cut(s)	500
Psp5II	RGGWCCY	1 cut(s)	271
Psp6I	CCWGG	2 cut(s)	484, 792
PspFI	CCCAGC	1 cut(s)	749
PspGI	CCWGG	2 cut(s)	484, 792
PspN4I	GGNNCC	3 cut(s)	272, 273, 477
PspPI	GGNCC	2 cut(s)	271, 397
PspPPI	RGGWCCY	1 cut(s)	271
PspXI	VCTCGAGB	1 cut(s)	185
PstI	CTGCAG	1 cut(s)	550
PsyI	GACNNNGTC	1 cut(s)	176
PvuII	CAGCTG	1 cut(s)	788
RsaI	GTAC	2 cut(s)	335, 446
RsaNI	GTAC	2 cut(s)	334, 445
SaqAI	TTAA	3 cut(s)	339, 500, 801
SatI	GCNGC	5 cut(s)	310, 313, 519, 549, 738
Sau3AI	GATC	2 cut(s)	408, 670
Sau96I	GGNCC	2 cut(s)	271, 397
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	2 cut(s)	486, 794
SduI	GDGCHC	2 cut(s)	198, 251
SfaNI	GCATC	1 cut(s)	796
SfcI	CTRYAG	2 cut(s)	546, 731
Sfr274I	CTCGAG	1 cut(s)	185
SinI	GGWCC	1 cut(s)	271
SlaI	CTCGAG	1 cut(s)	185
SmlI	CTYRAG	2 cut(s)	185, 829
SmoI	CTYRAG	2 cut(s)	185, 829
Sse9I	AATT	4 cut(s)	265, 453, 857, 886
SsiI	CCGC	5 cut(s)	61, 205, 309, 312, 519
StyD4I	CCNGG	2 cut(s)	484, 792
StyI	CCWWGG	2 cut(s)	12, 513
TaaI	ACNGT	2 cut(s)	472, 719
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	4 cut(s)	165, 186, 372, 414
TasI	AATT	4 cut(s)	265, 453, 857, 886
TauI	GCSGC	3 cut(s)	312, 315, 521
TfiI	GAWTC	1 cut(s)	684
Tru1I	TTAA	3 cut(s)	339, 500, 801
Tru9I	TTAA	3 cut(s)	339, 500, 801
TscAI	CASTG	2 cut(s)	724, 886
TseFI	GTSAC	2 cut(s)	641, 877
TseI	GCWGC	2 cut(s)	548, 737
Tsp45I	GTSAC	2 cut(s)	641, 877
TspRI	CASTG	2 cut(s)	724, 886
Tth111I	GACNNNGTC	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	271
VspI	ATTAAT	1 cut(s)	500
XceI	RCATGY	2 cut(s)	639, 669
XhoI	CTCGAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.