Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007382

Physical Location & Seq

Genomic Coordinates Reverse (-)

19788014 .. 19791181

Gene Structure 3168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G190700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGCATGCACGATCTCTCTCTCTCCTTCCTCCTCCTCTTCTTCTTTTCTACTCTCCCACACAAGCATTTTCCGTTTCAGAAGCCCCAGACATCTTTCGACCTCCTCCTCACGAAGACGACTCTCAGTCTCAGTCTCTGCTACTGCTTCGTCTTCTTCTTCTCTCCAAGCTCTGATTTTCGACTGCGACGGGGTAATCCTTGAGTCTGAGCACTTGCACCGCCAAGCTTACAACGAGGCCTTCGCGCACTTCAATGTTCGTTGCTCTTCGTCTGCCTCTCAGCCCCTCAATTGGGACCTCCACTTCTACGATCAGCTCCAGAACCAAATCGGCGGTGGAAAACCCAAAATGCGATGGTACTTTAAGGAGCATGGGTATCCGTCATCCACGATCTTCGAGAAGCCTCCGGAAGATGATGAGGGCCGGGCCAAGATCATCGATACTCTTCAGGATTGGAAAACTGAAAGGTACAAAGAAATTATCAAATCCGGAACTGTGGAACCCAGACCAGGAGTTTTAAGATTAATGGACGAGGCTAAGGCTGCTGGGAAAAAGCTTGCTGTTTGCTCTGCAGCAACTAAAAGTTCAGTAATATTATGTCTTGAGAACCTTATAGGAATTGAGCGCTTTCAAGGTCTTGATTGCTTCCTTGCTGGTGATGATGTGAAGCAAAAGAAGCCTGATCCTTCAATTTATCTTACAGCTTCCAAGAAACTCGGTATCCCAGAGAAAGATTGTTTGGTTGTGGAGGACAGTGTTATTGGGCTACAGGCAGCAACAAAAGCTGGGATGTCATGTGTGATTACCTACACATCTTCAACAGCTGACCAGGATTTTAAAGATGCAATAGCAATCTATCCTGACTTAAGCAATATAAGACTGAAAGACTTGGAATTATTACTTCAAAATGCTGTCATTGCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

309

Amino Acids

33.96

Weight (kDa)

7.03

Isoelectric Point (pI)

55.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39970
fragaria_vesca	FvH4_1g20570 FvH4_1g20570 FvH4_1g20570 FvH4_1g20570 FvH4_1g20570 FvH4_6g52570 FvH4_6g52570
malus_domestica	MD15G1322100.v1.1
prunus_persica	Prupe.6G190700_v2.0.a1 Prupe.6G190700_v2.0.a1
pyrus_communis	pycom15g28300
rosa_chinensis	RchiOBHm_Chr2g0112791
rosa_laevigata	RLG00000018010
rosa_multiflora	Rmu_co8125272.1_g000001 Rmu_sc0001708.1_g000020 Rmu_sc0002351.1_g000008
rosa_roxburghii	Rroxscaffold_2G00131140
rosa_rugosa	Rorug02G0182700
rosa_samantha	Rh2AG237400 Rh2BG250100 Rh2CG241300 Rh2DG244800
rosa_wichuraiana	Rw2G018360 Rw2G018550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	245
AccIII	TCCGGA	2 cut(s)	406, 488
AciI	CCGC	2 cut(s)	220, 333
AclWI	GGATC	1 cut(s)	677
AcuI	CTGAAG	1 cut(s)	431
AfaI	GTAC	2 cut(s)	359, 470
AfeI	AGCGCT	1 cut(s)	626
AfiI	CCNNNNNNNGG	3 cut(s)	291, 292, 509
AflII	CTTAAG	1 cut(s)	865
AgsI	TTSAA	5 cut(s)	253, 632, 690, 819, 905
AhdI	GACNNNNNGTC	1 cut(s)	125
AjnI	CCWGG	2 cut(s)	508, 828
AjuI	GAANNNNNNNTTGG	2 cut(s)	722, 754
AluBI	AGCT	7 cut(s)	170, 227, 316, 556, 704, 785, 824
AluI	AGCT	7 cut(s)	170, 227, 316, 556, 704, 785, 824
Alw21I	GWGCWC	1 cut(s)	213
Alw26I	GTCTC	2 cut(s)	133, 139
AlwI	GGATC	1 cut(s)	677
AlwNI	CAGNNNCTG	1 cut(s)	137
Aor13HI	TCCGGA	2 cut(s)	406, 488
Aor51HI	AGCGCT	1 cut(s)	626
AoxI	GGCC	3 cut(s)	237, 421, 426
ApeKI	GCWGC	3 cut(s)	542, 572, 773
AseI	ATTAAT	1 cut(s)	524
AspLEI	GCGC	2 cut(s)	247, 627
AspS9I	GGNCC	3 cut(s)	295, 421, 426
AsuC2I	CCSGG	1 cut(s)	425
AsuHPI	GGTGA	1 cut(s)	668
AvaII	GGWCC	1 cut(s)	295
BbsI	GAAGAC	2 cut(s)	121, 144
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	3 cut(s)	529, 584, 785
BccI	CCATC	1 cut(s)	348
BciT130I	CCWGG	2 cut(s)	510, 830
BciVI	GTATCC	2 cut(s)	387, 731
BcnI	CCSGG	1 cut(s)	425
BcoDI	GTCTC	2 cut(s)	133, 139
BfmI	CTRYAG	2 cut(s)	570, 767
BfoI	RGCGCY	1 cut(s)	628
BfrI	CTTAAG	1 cut(s)	865
BfuI	GTATCC	2 cut(s)	387, 731
BisI	GCNGC	3 cut(s)	543, 573, 774
BlsI	GCNGC	3 cut(s)	544, 574, 775
Bme1390I	CCNGG	3 cut(s)	425, 510, 830
Bme18I	GGWCC	1 cut(s)	295
BmeRI	GACNNNNNGTC	1 cut(s)	125
BmgT120I	GGNCC	3 cut(s)	295, 421, 426
BmiI	GGNNCC	2 cut(s)	296, 501
BmrFI	CCNGG	3 cut(s)	425, 510, 830
BmsI	GCATC	1 cut(s)	832
BpiI	GAAGAC	2 cut(s)	121, 144
BpmI	CTGGAG	1 cut(s)	302
Bpu10I	CCTNAGC	1 cut(s)	537
BpuEI	CTTGAG	2 cut(s)	221, 623
BpuMI	CCSGG	1 cut(s)	425
Bsa29I	ATCGAT	1 cut(s)	438
BsaWI	WCCGGW	2 cut(s)	406, 488
BsaXI	ACNNNNNCTCC	2 cut(s)	359, 389
Bsc4I	CCNNNNNNNGG	3 cut(s)	291, 292, 509
Bse3DI	GCAATG	1 cut(s)	915
BseAI	TCCGGA	2 cut(s)	406, 488
BseBI	CCWGG	2 cut(s)	510, 830
BseCI	ATCGAT	1 cut(s)	438
BseGI	GGATG	2 cut(s)	383, 795
BseLI	CCNNNNNNNGG	3 cut(s)	291, 292, 509
BseMI	GCAATG	1 cut(s)	915
BseMII	CTCAG	4 cut(s)	138, 144, 198, 293
BseRI	GAGGAG	4 cut(s)	22, 25, 94, 97
BseXI	GCAGC	3 cut(s)	529, 584, 785
BseYI	CCCAGC	2 cut(s)	545, 785
Bsh1236I	CGCG	1 cut(s)	245
BshFI	GGCC	3 cut(s)	239, 423, 428
BshVI	ATCGAT	1 cut(s)	438
BsiHKAI	GWGCWC	1 cut(s)	213
BsiSI	CCGG	3 cut(s)	407, 424, 489
BslFI	GGGAC	1 cut(s)	308
BslI	CCNNNNNNNGG	3 cut(s)	291, 292, 509
BsmAI	GTCTC	2 cut(s)	133, 139
BsmFI	GGGAC	1 cut(s)	308
BsnI	GGCC	3 cut(s)	239, 423, 428
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp13I	TCCGGA	2 cut(s)	406, 488
Bsp143I	GATC	5 cut(s)	12, 310, 390, 432, 682
BspACI	CCGC	2 cut(s)	220, 333
BspANI	GGCC	3 cut(s)	239, 423, 428
BspCNI	CTCAG	4 cut(s)	137, 143, 199, 292
BspDI	ATCGAT	1 cut(s)	438
BspEI	TCCGGA	2 cut(s)	406, 488
BspFNI	CGCG	1 cut(s)	245
BspLI	GGNNCC	2 cut(s)	296, 501
BspMAI	CTGCAG	1 cut(s)	574
BspPI	GGATC	1 cut(s)	677
BspQI	GCTCTTC	1 cut(s)	271
BspTI	CTTAAG	1 cut(s)	865
BsrDI	GCAATG	1 cut(s)	915
BssMI	GATC	5 cut(s)	12, 310, 390, 432, 682
Bst2UI	CCWGG	2 cut(s)	510, 830
Bst4CI	ACNGT	2 cut(s)	496, 755
Bst6I	CTCTTC	3 cut(s)	43, 271, 450
BstAFI	CTTAAG	1 cut(s)	865
BstC8I	GCNNGC	2 cut(s)	7, 558
BstDEI	CTNAG	5 cut(s)	124, 130, 207, 279, 537
BstF5I	GGATG	2 cut(s)	383, 795
BstFNI	CGCG	1 cut(s)	245
BstH2I	RGCGCY	1 cut(s)	628
BstHHI	GCGC	2 cut(s)	247, 627
BstKTI	GATC	5 cut(s)	15, 313, 393, 435, 685
BstMAI	GTCTC	2 cut(s)	133, 139
BstMBI	GATC	5 cut(s)	12, 310, 390, 432, 682
BstMWI	GCNNNNNNNGC	4 cut(s)	542, 676, 782, 917
BstNI	CCWGG	2 cut(s)	510, 830
BstNSI	RCATGY	1 cut(s)	9
BstSCI	CCNGG	3 cut(s)	423, 508, 828
BstSFI	CTRYAG	2 cut(s)	570, 767
BstUI	CGCG	1 cut(s)	245
BstV1I	GCAGC	3 cut(s)	529, 584, 785
BstV2I	GAAGAC	2 cut(s)	121, 144
Bsu15I	ATCGAT	1 cut(s)	438
BsuI	GTATCC	2 cut(s)	387, 731
BsuRI	GGCC	3 cut(s)	239, 423, 428
BsuTUI	ATCGAT	1 cut(s)	438
BtgZI	GCGATG	1 cut(s)	367
BtsCI	GGATG	2 cut(s)	383, 795
BtsIMutI	CAGTG	1 cut(s)	760
Cac8I	GCNNGC	2 cut(s)	7, 558
CaiI	CAGNNNCTG	1 cut(s)	137
CfoI	GCGC	2 cut(s)	247, 627
Cfr13I	GGNCC	3 cut(s)	295, 421, 426
ClaI	ATCGAT	1 cut(s)	438
Csp6I	GTAC	2 cut(s)	358, 469
CviAII	CATG	3 cut(s)	6, 371, 795
CviQI	GTAC	2 cut(s)	358, 469
DdeI	CTNAG	5 cut(s)	124, 130, 207, 279, 537
DpnI	GATC	5 cut(s)	14, 312, 392, 434, 684
DpnII	GATC	5 cut(s)	12, 310, 390, 432, 682
DraI	TTTAAA	1 cut(s)	838
DriI	GACNNNNNGTC	1 cut(s)	125
Eam1104I	CTCTTC	3 cut(s)	43, 271, 450
Eam1105I	GACNNNNNGTC	1 cut(s)	125
EarI	CTCTTC	3 cut(s)	43, 271, 450
Eco147I	AGGCCT	1 cut(s)	239
Eco47I	GGWCC	1 cut(s)	295
Eco47III	AGCGCT	1 cut(s)	626
Eco57I	CTGAAG	1 cut(s)	431
EcoO109I	RGGNCCY	1 cut(s)	295
EcoRII	CCWGG	2 cut(s)	508, 828
FaeI	CATG	3 cut(s)	9, 374, 798
FaiI	YATR	6 cut(s)	7, 372, 598, 614, 796, 875
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	3 cut(s)	5, 370, 794
Fnu4HI	GCNGC	3 cut(s)	543, 573, 774
FokI	GGATG	2 cut(s)	370, 802
Fsp4HI	GCNGC	3 cut(s)	543, 573, 774
GlaI	GCGC	2 cut(s)	246, 626
GluI	GCNGC	3 cut(s)	543, 573, 774
GsaI	CCCAGC	2 cut(s)	549, 789
GsuI	CTGGAG	1 cut(s)	302
HaeII	RGCGCY	1 cut(s)	628
HaeIII	GGCC	3 cut(s)	239, 423, 428
HapII	CCGG	3 cut(s)	407, 424, 489
HhaI	GCGC	2 cut(s)	247, 627
Hin1II	CATG	3 cut(s)	9, 374, 798
Hin6I	GCGC	2 cut(s)	245, 625
HinP1I	GCGC	2 cut(s)	245, 625
HindIII	AAGCTT	2 cut(s)	225, 554
HinfI	GANTC	2 cut(s)	120, 203
HpaII	CCGG	3 cut(s)	407, 424, 489
HphI	GGTGA	1 cut(s)	668
Hpy188I	TCNGA	3 cut(s)	80, 174, 208
Hpy188III	TCNNGA	9 cut(s)	111, 319, 397, 407, 449, 489, 602, 638, 860
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	3 cut(s)	36, 250, 696
HpyCH4III	ACNGT	2 cut(s)	496, 755
HpyCH4V	TGCA	4 cut(s)	9, 217, 572, 845
HpyF10VI	GCNNNNNNNGC	4 cut(s)	542, 676, 782, 917
HpyF3I	CTNAG	5 cut(s)	124, 130, 207, 279, 537
Hsp92II	CATG	3 cut(s)	9, 374, 798
HspAI	GCGC	2 cut(s)	245, 625
Kpn2I	TCCGGA	2 cut(s)	406, 488
Kzo9I	GATC	5 cut(s)	12, 310, 390, 432, 682
LguI	GCTCTTC	1 cut(s)	271
LmnI	GCTCC	2 cut(s)	321, 367
Lsp1109I	GCAGC	3 cut(s)	529, 584, 785
LweI	GCATC	1 cut(s)	832
MalI	GATC	5 cut(s)	14, 312, 392, 434, 684
MboI	GATC	5 cut(s)	12, 310, 390, 432, 682
MfeI	CAATTG	1 cut(s)	289
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	6 cut(s)	289, 477, 618, 690, 893, 922
MlyI	GAGTC	2 cut(s)	114, 212
MroI	TCCGGA	2 cut(s)	406, 488
MseI	TTAA	6 cut(s)	363, 518, 524, 837, 866, 925
MslI	CAYNNNNRTG	1 cut(s)	252
MspA1I	CMGCKG	1 cut(s)	824
MspCI	CTTAAG	1 cut(s)	865
MspI	CCGG	3 cut(s)	407, 424, 489
MspR9I	CCNGG	3 cut(s)	425, 510, 830
MunI	CAATTG	1 cut(s)	289
MvaI	CCWGG	2 cut(s)	510, 830
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	4 cut(s)	542, 676, 782, 917
NciI	CCSGG	1 cut(s)	425
NdeII	GATC	5 cut(s)	12, 310, 390, 432, 682
NlaIII	CATG	3 cut(s)	9, 374, 798
NlaIV	GGNNCC	2 cut(s)	296, 501
NspI	RCATGY	1 cut(s)	9
PaeI	GCATGC	1 cut(s)	9
PceI	AGGCCT	1 cut(s)	239
PciSI	GCTCTTC	1 cut(s)	271
PkrI	GCNGC	3 cut(s)	544, 574, 775
PleI	GAGTC	2 cut(s)	114, 211
PpsI	GAGTC	2 cut(s)	114, 211
PpuMI	RGGWCCY	1 cut(s)	295
PshBI	ATTAAT	1 cut(s)	524
Psp5II	RGGWCCY	1 cut(s)	295
Psp6I	CCWGG	2 cut(s)	508, 828
PspFI	CCCAGC	2 cut(s)	545, 785
PspGI	CCWGG	2 cut(s)	508, 828
PspN4I	GGNNCC	2 cut(s)	296, 501
PspPI	GGNCC	3 cut(s)	295, 421, 426
PspPPI	RGGWCCY	1 cut(s)	295
PstI	CTGCAG	1 cut(s)	574
PstNI	CAGNNNCTG	1 cut(s)	137
PvuII	CAGCTG	1 cut(s)	824
RsaI	GTAC	2 cut(s)	359, 470
RsaNI	GTAC	2 cut(s)	358, 469
RseI	CAYNNNNRTG	1 cut(s)	252
SapI	GCTCTTC	1 cut(s)	271
SaqAI	TTAA	6 cut(s)	363, 518, 524, 837, 866, 925
SatI	GCNGC	3 cut(s)	543, 573, 774
Sau3AI	GATC	5 cut(s)	12, 310, 390, 432, 682
Sau96I	GGNCC	3 cut(s)	295, 421, 426
SchI	GAGTC	2 cut(s)	114, 212
ScrFI	CCNGG	3 cut(s)	425, 510, 830
SduI	GDGCHC	1 cut(s)	213
SfaNI	GCATC	1 cut(s)	832
SfcI	CTRYAG	2 cut(s)	570, 767
SinI	GGWCC	1 cut(s)	295
SmiMI	CAYNNNNRTG	1 cut(s)	252
SmlI	CTYRAG	3 cut(s)	200, 602, 865
SmoI	CTYRAG	3 cut(s)	200, 602, 865
SphI	GCATGC	1 cut(s)	9
Sse9I	AATT	6 cut(s)	289, 477, 618, 690, 893, 922
SseBI	AGGCCT	1 cut(s)	239
SsiI	CCGC	2 cut(s)	220, 333
SspI	AATATT	1 cut(s)	594
StuI	AGGCCT	1 cut(s)	239
StyD4I	CCNGG	3 cut(s)	423, 508, 828
TaaI	ACNGT	2 cut(s)	496, 755
TaqI	TCGA	4 cut(s)	98, 180, 396, 438
TasI	AATT	6 cut(s)	289, 477, 618, 690, 893, 922
Tru1I	TTAA	6 cut(s)	363, 518, 524, 837, 866, 925
Tru9I	TTAA	6 cut(s)	363, 518, 524, 837, 866, 925
TscAI	CASTG	1 cut(s)	760
TseI	GCWGC	3 cut(s)	542, 572, 773
TspGWI	ACGGA	2 cut(s)	62, 369
TspRI	CASTG	1 cut(s)	760
Vha464I	CTTAAG	1 cut(s)	865
VpaK11BI	GGWCC	1 cut(s)	295
VspI	ATTAAT	1 cut(s)	524
XceI	RCATGY	1 cut(s)	9
XcmI	CCANNNNNNNNNTGG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.