Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007382

Physical Location & Seq

Genomic Coordinates Reverse (-)

67689568 .. 67692701

Gene Structure 3134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00131140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCGTTCACCATGGCTCTCTCTTCCCCCTCCTCCTCTTTTCTACTCTCCCACACCACCCGCCTTCACTTCCGAAGCCCCAGAAACCTCTCCACCCCCACACGACGACCTCTCTCACTCTCAGTCTCAGCTTCTTCCTCTGCCTCTCTCCAAGCCTTGATTTTCGACTGCGACGGAGTCATCCTCGAGTCGGAGCACCTGCACCGCCAAGCTTACAACGACGCCTTCGCTCACTTCAACGTCCGCTGCTCCTCCCAGACGCTCAATTGGGACCCCGAGTTCTACGACCAGCTCCAGAACCAAATCGGCGGCGGCAAGCCCAAAATGCGATGGTACTTTAAGGAGAACGGGTGGCCGTCGTCCACCATTTTCGAGAAGCCTCCAGAAGACGATGAGGGCCGAGCCAAGATCATCGACACTCTTCAGGATTGGAAAACTGAGAGGTACAAAGAAATTATCAAGTCCGGAACTGTGGAACCAAGACCAGGAGTTTTGAGATTAATGGATGAGGCCAAGGCCGCTGGGAAAAAGCTCGCTGTTTGCTCTGCAGCTACTAAGAGTTCAGTTATATTATGTCTTGAAAGCCTTATAGGAAATGAGCGCTTTCAAGGTCTTGATTGCTTTCTTGCTGGTGATGATGTGAAGGAAAAAAAGCCCGACCCTTCAATTTATCTTACAGCTGCTAAGAGACTCGGAATCTCAGTAAGAGATTGTTTGGTTGTGGAGGACAGTGTTATTGGGCTACAGGCAGCAACAAGAGCTGGGATGTCCTGTGTGATTAGCTATACATCTTCAACAGCTGACCAGGATTTTAAAGATGCAATAGCAATATATCCCGACTTGAGTAACATAAGACTGAAAGACTTGGAATTATTACTTCAAAATGCTGTCATTGCCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

300

Amino Acids

33.23

Weight (kDa)

6.24

Isoelectric Point (pI)

47.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	51 - 255	6e-25	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	54 - 259	1e-20	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39970
fragaria_vesca	FvH4_1g20570 FvH4_1g20570 FvH4_1g20570 FvH4_1g20570 FvH4_1g20570 FvH4_6g52570 FvH4_6g52570
malus_domestica	MD15G1322100.v1.1
prunus_persica	Prupe.6G190700_v2.0.a1 Prupe.6G190700_v2.0.a1
pyrus_communis	pycom15g28300
rosa_chinensis	RchiOBHm_Chr2g0112791
rosa_laevigata	RLG00000018010
rosa_multiflora	Rmu_co8125272.1_g000001 Rmu_sc0001708.1_g000020 Rmu_sc0002351.1_g000008
rosa_roxburghii	Rroxscaffold_2G00131140
rosa_rugosa	Rorug02G0182700
rosa_samantha	Rh2AG237400 Rh2BG250100 Rh2CG241300 Rh2DG244800
rosa_wichuraiana	Rw2G018360 Rw2G018550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	207
Acc36I	ACCTGC	1 cut(s)	207
AccIII	TCCGGA	1 cut(s)	464
AciI	CCGC	6 cut(s)	61, 205, 244, 309, 312, 519
AcoI	YGGCCR	1 cut(s)	353
AcuI	CTGAAG	1 cut(s)	407
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	2 cut(s)	335, 446
AfeI	AGCGCT	1 cut(s)	602
AfiI	CCNNNNNNNGG	2 cut(s)	190, 485
AgsI	TTSAA	6 cut(s)	238, 581, 608, 666, 795, 881
AjnI	CCWGG	2 cut(s)	484, 804
AloI	GAACNNNNNNTCC	2 cut(s)	263, 295
AluBI	AGCT	9 cut(s)	131, 212, 292, 532, 551, 680, 761, 783, 800
AluI	AGCT	9 cut(s)	131, 212, 292, 532, 551, 680, 761, 783, 800
Alw21I	GWGCWC	1 cut(s)	198
Alw26I	GTCTC	2 cut(s)	130, 682
Ama87I	CYCGRG	2 cut(s)	185, 275
Aor13HI	TCCGGA	1 cut(s)	464
Aor51HI	AGCGCT	1 cut(s)	602
AoxI	GGCC	4 cut(s)	353, 397, 510, 516
ApeKI	GCWGC	4 cut(s)	246, 548, 680, 749
AseI	ATTAAT	1 cut(s)	500
AspLEI	GCGC	1 cut(s)	603
AspS9I	GGNCC	2 cut(s)	271, 397
AsuHPI	GGTGA	1 cut(s)	644
AvaI	CYCGRG	2 cut(s)	185, 275
AvaII	GGWCC	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	393
Bbv12I	GWGCWC	1 cut(s)	198
BbvI	GCAGC	4 cut(s)	233, 560, 667, 761
BccI	CCATC	1 cut(s)	324
BceAI	ACGGC	1 cut(s)	340
BciT130I	CCWGG	2 cut(s)	486, 806
BcoDI	GTCTC	2 cut(s)	130, 682
BfmI	CTRYAG	2 cut(s)	546, 743
BfoI	RGCGCY	1 cut(s)	604
BfuAI	ACCTGC	1 cut(s)	207
BisI	GCNGC	7 cut(s)	247, 310, 313, 519, 549, 681, 750
BlsI	GCNGC	7 cut(s)	248, 311, 314, 520, 550, 682, 751
Bme1390I	CCNGG	2 cut(s)	486, 806
Bme18I	GGWCC	1 cut(s)	271
BmeT110I	CYCGRG	2 cut(s)	185, 275
BmgT120I	GGNCC	2 cut(s)	271, 397
BmiI	GGNNCC	3 cut(s)	272, 273, 477
BmrFI	CCNGG	2 cut(s)	486, 806
BmsI	GCATC	1 cut(s)	808
BpiI	GAAGAC	1 cut(s)	393
BplI	GAGNNNNNCTC	2 cut(s)	168, 200
BpmI	CTGGAG	2 cut(s)	278, 366
BpuEI	CTTGAG	1 cut(s)	862
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	12, 513
BsaWI	WCCGGW	1 cut(s)	464
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 485
Bse3DI	GCAATG	1 cut(s)	891
BseAI	TCCGGA	1 cut(s)	464
BseBI	CCWGG	2 cut(s)	486, 806
BseDI	CCNNGG	2 cut(s)	12, 513
BseGI	GGATG	3 cut(s)	180, 511, 771
BseLI	CCNNNNNNNGG	2 cut(s)	190, 485
BseMI	GCAATG	1 cut(s)	891
BseMII	CTCAG	4 cut(s)	135, 141, 429, 714
BseRI	GAGGAG	3 cut(s)	22, 25, 241
BseXI	GCAGC	4 cut(s)	233, 560, 667, 761
BseYI	CCCAGC	2 cut(s)	521, 761
BsgI	GTGCAG	1 cut(s)	185
BshFI	GGCC	4 cut(s)	355, 399, 512, 518
BsiHKAI	GWGCWC	1 cut(s)	198
BsiHKCI	CYCGRG	2 cut(s)	185, 275
BsiSI	CCGG	1 cut(s)	465
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	2 cut(s)	190, 485
BsmAI	GTCTC	2 cut(s)	130, 682
BsmFI	GGGAC	1 cut(s)	284
BsnI	GGCC	4 cut(s)	355, 399, 512, 518
BsoBI	CYCGRG	2 cut(s)	185, 275
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp13I	TCCGGA	1 cut(s)	464
Bsp143I	GATC	1 cut(s)	408
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	6 cut(s)	61, 205, 244, 309, 312, 519
BspANI	GGCC	4 cut(s)	355, 399, 512, 518
BspCNI	CTCAG	4 cut(s)	134, 140, 430, 713
BspEI	TCCGGA	1 cut(s)	464
BspLI	GGNNCC	3 cut(s)	272, 273, 477
BspMAI	CTGCAG	1 cut(s)	550
BspMI	ACCTGC	1 cut(s)	207
BsrDI	GCAATG	1 cut(s)	891
BssECI	CCNNGG	2 cut(s)	12, 513
BssMI	GATC	1 cut(s)	408
BssNI	GRCGYC	1 cut(s)	222
BssT1I	CCWWGG	2 cut(s)	12, 513
Bst2UI	CCWGG	2 cut(s)	486, 806
Bst4CI	ACNGT	2 cut(s)	472, 731
Bst6I	CTCTTC	2 cut(s)	28, 426
BstACI	GRCGYC	1 cut(s)	222
BstC8I	GCNNGC	2 cut(s)	317, 534
BstDEI	CTNAG	6 cut(s)	121, 127, 438, 555, 684, 700
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	3 cut(s)	180, 511, 771
BstH2I	RGCGCY	1 cut(s)	604
BstHHI	GCGC	1 cut(s)	603
BstKTI	GATC	1 cut(s)	411
BstMAI	GTCTC	2 cut(s)	130, 682
BstMBI	GATC	1 cut(s)	408
BstMWI	GCNNNNNNNGC	4 cut(s)	325, 518, 758, 893
BstNI	CCWGG	2 cut(s)	486, 806
BstSCI	CCNGG	2 cut(s)	484, 804
BstSFI	CTRYAG	2 cut(s)	546, 743
BstV1I	GCAGC	4 cut(s)	233, 560, 667, 761
BstV2I	GAAGAC	1 cut(s)	393
BsuRI	GGCC	4 cut(s)	355, 399, 512, 518
BtgI	CCRYGG	1 cut(s)	12
BtgZI	GCGATG	1 cut(s)	343
BtsCI	GGATG	3 cut(s)	180, 511, 771
BtsIMutI	CAGTG	1 cut(s)	736
BveI	ACCTGC	1 cut(s)	207
Cac8I	GCNNGC	2 cut(s)	317, 534
CfoI	GCGC	1 cut(s)	603
Cfr13I	GGNCC	2 cut(s)	271, 397
CseI	GACGC	2 cut(s)	230, 268
Csp6I	GTAC	2 cut(s)	334, 445
CviAII	CATG	1 cut(s)	13
CviQI	GTAC	2 cut(s)	334, 445
DdeI	CTNAG	6 cut(s)	121, 127, 438, 555, 684, 700
DpnI	GATC	1 cut(s)	410
DpnII	GATC	1 cut(s)	408
DraI	TTTAAA	1 cut(s)	814
EaeI	YGGCCR	1 cut(s)	353
Eam1104I	CTCTTC	2 cut(s)	28, 426
EarI	CTCTTC	2 cut(s)	28, 426
Eco130I	CCWWGG	2 cut(s)	12, 513
Eco47I	GGWCC	1 cut(s)	271
Eco47III	AGCGCT	1 cut(s)	602
Eco57I	CTGAAG	1 cut(s)	407
Eco88I	CYCGRG	2 cut(s)	185, 275
EcoO109I	RGGNCCY	1 cut(s)	271
EcoRII	CCWGG	2 cut(s)	484, 804
EcoT14I	CCWWGG	2 cut(s)	12, 513
ErhI	CCWWGG	2 cut(s)	12, 513
FaeI	CATG	1 cut(s)	16
FaiI	YATR	7 cut(s)	14, 569, 574, 590, 786, 832, 851
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	1 cut(s)	12
FauI	CCCGC	1 cut(s)	68
Fnu4HI	GCNGC	7 cut(s)	247, 310, 313, 519, 549, 681, 750
FokI	GGATG	3 cut(s)	167, 518, 778
Fsp4HI	GCNGC	7 cut(s)	247, 310, 313, 519, 549, 681, 750
GlaI	GCGC	1 cut(s)	602
GluI	GCNGC	7 cut(s)	247, 310, 313, 519, 549, 681, 750
GsaI	CCCAGC	2 cut(s)	525, 765
GsuI	CTGGAG	2 cut(s)	278, 366
HaeII	RGCGCY	1 cut(s)	604
HaeIII	GGCC	4 cut(s)	355, 399, 512, 518
HapII	CCGG	1 cut(s)	465
HgaI	GACGC	2 cut(s)	230, 268
HhaI	GCGC	1 cut(s)	603
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	1 cut(s)	16
Hin6I	GCGC	1 cut(s)	601
HinP1I	GCGC	1 cut(s)	601
HindIII	AAGCTT	1 cut(s)	210
HinfI	GANTC	4 cut(s)	177, 188, 690, 696
HpaII	CCGG	1 cut(s)	465
HphI	GGTGA	1 cut(s)	644
Hpy166II	GTNNAC	2 cut(s)	9, 363
Hpy188I	TCNGA	3 cut(s)	74, 193, 695
Hpy188III	TCNNGA	8 cut(s)	295, 373, 383, 425, 465, 578, 614, 836
Hpy8I	GTNNAC	2 cut(s)	9, 363
Hpy99I	CGWCG	4 cut(s)	108, 176, 224, 361
HpyAV	CCTTC	4 cut(s)	74, 235, 637, 672
HpyCH4III	ACNGT	2 cut(s)	472, 731
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	3 cut(s)	202, 548, 821
HpyF10VI	GCNNNNNNNGC	4 cut(s)	325, 518, 758, 893
HpyF3I	CTNAG	6 cut(s)	121, 127, 438, 555, 684, 700
HpySE526I	ACGT	1 cut(s)	240
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	1 cut(s)	16
HspAI	GCGC	1 cut(s)	601
KflI	GGGWCCC	1 cut(s)	271
Kpn2I	TCCGGA	1 cut(s)	464
Kzo9I	GATC	1 cut(s)	408
LmnI	GCTCC	3 cut(s)	193, 254, 297
Lsp1109I	GCAGC	4 cut(s)	233, 560, 667, 761
LweI	GCATC	1 cut(s)	808
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	1 cut(s)	845
MalI	GATC	1 cut(s)	410
MboI	GATC	1 cut(s)	408
MboII	GAAGA	5 cut(s)	15, 126, 398, 413, 783
MfeI	CAATTG	1 cut(s)	265
MhlI	GDGCHC	1 cut(s)	198
MluCI	AATT	5 cut(s)	265, 453, 666, 869, 898
MlyI	GAGTC	3 cut(s)	186, 197, 684
MmeI	TCCRAC	1 cut(s)	171
MroI	TCCGGA	1 cut(s)	464
MseI	TTAA	3 cut(s)	339, 500, 813
MspA1I	CMGCKG	4 cut(s)	246, 521, 680, 800
MspI	CCGG	1 cut(s)	465
MspR9I	CCNGG	2 cut(s)	486, 806
MunI	CAATTG	1 cut(s)	265
MvaI	CCWGG	2 cut(s)	486, 806
MwoI	GCNNNNNNNGC	4 cut(s)	325, 518, 758, 893
NcoI	CCATGG	1 cut(s)	12
NdeII	GATC	1 cut(s)	408
NlaIII	CATG	1 cut(s)	16
NlaIV	GGNNCC	3 cut(s)	272, 273, 477
NmeAIII	GCCGAG	1 cut(s)	425
PaeR7I	CTCGAG	1 cut(s)	185
PaqCI	CACCTGC	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	696
PflFI	GACNNNGTC	1 cut(s)	176
PkrI	GCNGC	7 cut(s)	248, 311, 314, 520, 550, 682, 751
PleI	GAGTC	3 cut(s)	185, 196, 684
PpsI	GAGTC	3 cut(s)	185, 196, 684
PpuMI	RGGWCCY	1 cut(s)	271
PshBI	ATTAAT	1 cut(s)	500
Psp5II	RGGWCCY	1 cut(s)	271
Psp6I	CCWGG	2 cut(s)	484, 804
PspFI	CCCAGC	2 cut(s)	521, 761
PspGI	CCWGG	2 cut(s)	484, 804
PspN4I	GGNNCC	3 cut(s)	272, 273, 477
PspPI	GGNCC	2 cut(s)	271, 397
PspPPI	RGGWCCY	1 cut(s)	271
PspXI	VCTCGAGB	1 cut(s)	185
PstI	CTGCAG	1 cut(s)	550
PsyI	GACNNNGTC	1 cut(s)	176
PvuII	CAGCTG	2 cut(s)	680, 800
RsaI	GTAC	2 cut(s)	335, 446
RsaNI	GTAC	2 cut(s)	334, 445
SaqAI	TTAA	3 cut(s)	339, 500, 813
SatI	GCNGC	7 cut(s)	247, 310, 313, 519, 549, 681, 750
Sau3AI	GATC	1 cut(s)	408
Sau96I	GGNCC	2 cut(s)	271, 397
SchI	GAGTC	3 cut(s)	186, 197, 684
ScrFI	CCNGG	2 cut(s)	486, 806
SduI	GDGCHC	1 cut(s)	198
SfaNI	GCATC	1 cut(s)	808
SfcI	CTRYAG	2 cut(s)	546, 743
Sfr274I	CTCGAG	1 cut(s)	185
SinI	GGWCC	1 cut(s)	271
SlaI	CTCGAG	1 cut(s)	185
SmlI	CTYRAG	2 cut(s)	185, 841
SmoI	CTYRAG	2 cut(s)	185, 841
Sse9I	AATT	5 cut(s)	265, 453, 666, 869, 898
SsiI	CCGC	6 cut(s)	61, 205, 244, 309, 312, 519
StyD4I	CCNGG	2 cut(s)	484, 804
StyI	CCWWGG	2 cut(s)	12, 513
TaaI	ACNGT	2 cut(s)	472, 731
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	4 cut(s)	165, 186, 372, 414
TasI	AATT	5 cut(s)	265, 453, 666, 869, 898
TauI	GCSGC	3 cut(s)	312, 315, 521
TfiI	GAWTC	1 cut(s)	696
Tru1I	TTAA	3 cut(s)	339, 500, 813
Tru9I	TTAA	3 cut(s)	339, 500, 813
TscAI	CASTG	1 cut(s)	736
TseI	GCWGC	4 cut(s)	246, 548, 680, 749
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	1 cut(s)	736
Tth111I	GACNNNGTC	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	271
VspI	ATTAAT	1 cut(s)	500
XhoI	CTCGAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.