Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008926

Physical Location & Seq

Genomic Coordinates Reverse (-)

18548444 .. 18551183

Gene Structure 2740 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G40010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGAGAGATACGACATCTTAAGAGATCTTGGTTCCGGTAACTTTGGAGTTGCTAAGCTTGTCAGAGAAAAAGCCAACGGAGAGTTTTACGCCGTTAAATACATCGAAAGAGGCCTTAAGATTGATGAACATGTTCAGAGAGAGATCATAAACCACAGAGACTTGAAGCATCCTAATATCATCAGATTTAAAGAGGTTTTTGTAACACCAACACATCTTGCCATAGTAATGGAGTATGCAGCTGGTGGTGAACTTTTTGAAAGAATTTGCAATGCCGGTAGATTCAGCGAAGACGAAGGAAGATATTATTTCAAACAACTTATCTCGGGAGTTAGCTATTGTCACGCTATGCAAATATGTCACAGAGACCTTAAGCTCGAGAATACACTCTTAGACGGGAGCCCGTCGTCGCATCTTAAAATATGTGATTTTGGATACTCCAAGTCATCAGTTTTACACTCTCAACCAAAATCCACCGTGGGAACTCCGGCTTACGTTGCTCCGGAAGTCTTGTCCCGGAAAGAATATAATGGAAAGATTGCAGATGTGTGGTCGTGTGGGGTGACCTTATATGTAATGTTAGTTGGTGCTTATCCCTTTGAAGATCCCGAAGATCCACGGAACATTAGAAACACCATTCAGAGGATATTAAGTGTACACTACACCATACCGGATTACGTCAGGATTTCCTCCGAGTGCAAGCATCTCTTGTCTCGTATCTTTGTGGCTGACCCTGATAAGAGAATAACTGTACCGGAAATCGAAAAGCACCCGTGGTTCTTGAAGGGCCCTTTGGTTGTGCCGCCGGAGGAAGAGAAATGCGATAATGGAGTTGAAGAAGAAGAAGAAGAAGAAGAGAAGTGTCGACAGAGTGTTGAAGAGATAGTGAAGATAATAGAGGAAGCAAGAAAGGGAGTAAATGGTACGGATAATAATGGTGGATTAGGGTTAATAGATGGGAGCATTGATCTTGATGATATTGATGATGCTGATATTTATGATGATGTTGATGATGATGAGGAGAGAAATGGTGATTTCGTATGTGCTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

350

Amino Acids

39.77

Weight (kDa)

4.88

Isoelectric Point (pI)

45.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 260	4.3e-73	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	6 - 255	4.4e-30	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40010
fragaria_vesca	FvH4_1g20310 FvH4_1g20310 FvH4_1g20310 FvH4_1g20310 FvH4_1g20310
malus_domestica	MD01G1035000.v1.1 MD15G1321000.v1.1
prunus_persica	Prupe.6G192200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0112461
rosa_laevigata	RLG00000017982
rosa_multiflora	Rmu_sc0012231.1_g000005 Rmu_sc0036399.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131410 Rroxscaffold_3G00222500
rosa_rugosa	Rorug02G0181000
rosa_samantha	Rh2AG234100 Rh2BG247600 Rh2CG238600 Rh2CG238700 Rh2DG241700
rosa_wichuraiana	Rw2G018130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	865
AccIII	TCCGGA	1 cut(s)	502
AciI	CCGC	1 cut(s)	803
AclWI	GGATC	2 cut(s)	599, 608
AcsI	RAATTY	1 cut(s)	264
AfaI	GTAC	3 cut(s)	657, 753, 925
AfiI	CCNNNNNNNGG	1 cut(s)	642
AflII	CTTAAG	3 cut(s)	19, 116, 371
AflIII	ACRYGT	1 cut(s)	130
AgsI	TTSAA	7 cut(s)	166, 260, 313, 602, 784, 836, 878
AjuI	GAANNNNNNNTTGG	2 cut(s)	776, 808
AluBI	AGCT	4 cut(s)	58, 242, 336, 376
AluI	AGCT	4 cut(s)	58, 242, 336, 376
Alw21I	GWGCWC	1 cut(s)	1048
Alw26I	GTCTC	3 cut(s)	153, 360, 717
AlwI	GGATC	2 cut(s)	599, 608
Ama87I	CYCGRG	2 cut(s)	325, 377
Aor13HI	TCCGGA	1 cut(s)	502
AoxI	GGCC	2 cut(s)	112, 787
ApaI	GGGCCC	1 cut(s)	791
ApeKI	GCWGC	1 cut(s)	239
ApoI	RAATTY	1 cut(s)	264
Asp700I	GAANNNNTTC	1 cut(s)	132
AspS9I	GGNCC	2 cut(s)	787, 788
AsuC2I	CCSGG	1 cut(s)	517
AsuHPI	GGTGA	3 cut(s)	260, 574, 1043
AvaI	CYCGRG	2 cut(s)	325, 377
BaeGI	GKGCMC	1 cut(s)	791
BanII	GRGCYC	2 cut(s)	404, 791
BbsI	GAAGAC	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	1048
BbvI	GCAGC	1 cut(s)	251
BccI	CCATC	1 cut(s)	950
BceAI	ACGGC	1 cut(s)	77
BciVI	GTATCC	1 cut(s)	428
BcnI	CCSGG	1 cut(s)	517
BcoDI	GTCTC	3 cut(s)	153, 360, 717
BfrI	CTTAAG	3 cut(s)	19, 116, 371
BfuI	GTATCC	1 cut(s)	428
BglII	AGATCT	1 cut(s)	25
BisI	GCNGC	2 cut(s)	240, 803
BlpI	GCTNAGC	1 cut(s)	54
BlsI	GCNGC	2 cut(s)	241, 804
Bme1390I	CCNGG	1 cut(s)	517
BmeT110I	CYCGRG	2 cut(s)	325, 377
BmgT120I	GGNCC	2 cut(s)	787, 788
BmiI	GGNNCC	3 cut(s)	34, 401, 789
BmrFI	CCNGG	1 cut(s)	517
BmsI	GCATC	4 cut(s)	178, 421, 712, 976
BpiI	GAAGAC	1 cut(s)	297
Bpu1102I	GCTNAGC	1 cut(s)	54
BpuMI	CCSGG	1 cut(s)	517
BsaI	GGTCTC	1 cut(s)	360
BsaJI	CCNNGG	3 cut(s)	477, 617, 773
BsaWI	WCCGGW	4 cut(s)	35, 502, 670, 754
Bsc4I	CCNNNNNNNGG	1 cut(s)	642
Bse118I	RCCGGY	1 cut(s)	275
Bse3DI	GCAATG	1 cut(s)	277
BseAI	TCCGGA	1 cut(s)	502
BseDI	CCNNGG	3 cut(s)	477, 617, 773
BseGI	GGATG	1 cut(s)	169
BseLI	CCNNNNNNNGG	1 cut(s)	642
BseMI	GCAATG	1 cut(s)	277
BseRI	GAGGAG	1 cut(s)	1034
BseSI	GKGCMC	1 cut(s)	791
BseXI	GCAGC	1 cut(s)	251
BshFI	GGCC	2 cut(s)	114, 789
BsiHKAI	GWGCWC	1 cut(s)	1048
BsiHKCI	CYCGRG	2 cut(s)	325, 377
BsiSI	CCGG	8 cut(s)	36, 276, 488, 503, 517, 671, 755, 806
BslFI	GGGAC	1 cut(s)	499
BslI	CCNNNNNNNGG	1 cut(s)	642
BsmAI	GTCTC	3 cut(s)	153, 360, 717
BsmFI	GGGAC	1 cut(s)	499
BsnI	GGCC	2 cut(s)	114, 789
Bso31I	GGTCTC	1 cut(s)	360
BsoBI	CYCGRG	2 cut(s)	325, 377
Bsp120I	GGGCCC	1 cut(s)	787
Bsp1286I	GDGCHC	3 cut(s)	404, 791, 1048
Bsp13I	TCCGGA	1 cut(s)	502
Bsp1407I	TGTACA	1 cut(s)	655
Bsp143I	GATC	5 cut(s)	25, 144, 604, 613, 967
Bsp1720I	GCTNAGC	1 cut(s)	54
BspACI	CCGC	1 cut(s)	803
BspANI	GGCC	2 cut(s)	114, 789
BspEI	TCCGGA	1 cut(s)	502
BspLI	GGNNCC	3 cut(s)	34, 401, 789
BspPI	GGATC	2 cut(s)	599, 608
BspTI	CTTAAG	3 cut(s)	19, 116, 371
BspTNI	GGTCTC	1 cut(s)	360
BsrDI	GCAATG	1 cut(s)	277
BsrFI	RCCGGY	1 cut(s)	275
BsrGI	TGTACA	1 cut(s)	655
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	3 cut(s)	477, 617, 773
BssMI	GATC	5 cut(s)	25, 144, 604, 613, 967
Bst4CI	ACNGT	2 cut(s)	478, 751
Bst6I	CTCTTC	3 cut(s)	807, 849, 873
BstAFI	CTTAAG	3 cut(s)	19, 116, 371
BstAUI	TGTACA	1 cut(s)	655
BstC8I	GCNNGC	1 cut(s)	701
BstDEI	CTNAG	2 cut(s)	54, 391
BstDSI	CCRYGG	3 cut(s)	477, 617, 773
BstEII	GGTNACC	1 cut(s)	562
BstF5I	GGATG	1 cut(s)	169
BstKTI	GATC	5 cut(s)	28, 147, 607, 616, 970
BstMAI	GTCTC	3 cut(s)	153, 360, 717
BstMBI	GATC	5 cut(s)	25, 144, 604, 613, 967
BstMWI	GCNNNNNNNGC	1 cut(s)	497
BstNSI	RCATGY	1 cut(s)	134
BstPI	GGTNACC	1 cut(s)	562
BstSCI	CCNGG	1 cut(s)	515
BstSLI	GKGCMC	1 cut(s)	791
BstV1I	GCAGC	1 cut(s)	251
BstV2I	GAAGAC	1 cut(s)	297
BstX2I	RGATCY	3 cut(s)	25, 604, 613
BstXI	CCANNNNNNTGG	1 cut(s)	229
BstYI	RGATCY	3 cut(s)	25, 604, 613
BsuI	GTATCC	1 cut(s)	428
BsuRI	GGCC	2 cut(s)	114, 789
BtgI	CCRYGG	3 cut(s)	477, 617, 773
BtsCI	GGATG	1 cut(s)	169
Cac8I	GCNNGC	1 cut(s)	701
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	2 cut(s)	787, 788
Csp6I	GTAC	3 cut(s)	656, 752, 924
CviAII	CATG	1 cut(s)	131
CviQI	GTAC	3 cut(s)	656, 752, 924
DdeI	CTNAG	2 cut(s)	54, 391
DpnI	GATC	5 cut(s)	27, 146, 606, 615, 969
DpnII	GATC	5 cut(s)	25, 144, 604, 613, 967
DraI	TTTAAA	1 cut(s)	190
Eam1104I	CTCTTC	3 cut(s)	807, 849, 873
EarI	CTCTTC	3 cut(s)	807, 849, 873
Eco147I	AGGCCT	1 cut(s)	114
Eco24I	GRGCYC	2 cut(s)	404, 791
Eco31I	GGTCTC	1 cut(s)	360
Eco88I	CYCGRG	2 cut(s)	325, 377
Eco91I	GGTNACC	1 cut(s)	562
EcoO109I	RGGNCCY	2 cut(s)	787, 788
EcoO65I	GGTNACC	1 cut(s)	562
EcoT38I	GRGCYC	2 cut(s)	404, 791
FaeI	CATG	1 cut(s)	134
FalI	AAGNNNNNCTT	2 cut(s)	692, 724
FaqI	GGGAC	1 cut(s)	499
FatI	CATG	1 cut(s)	130
FblI	GTMKAC	1 cut(s)	865
Fnu4HI	GCNGC	2 cut(s)	240, 803
FokI	GGATG	1 cut(s)	156
FriOI	GRGCYC	2 cut(s)	404, 791
Fsp4HI	GCNGC	2 cut(s)	240, 803
GluI	GCNGC	2 cut(s)	240, 803
HaeIII	GGCC	2 cut(s)	114, 789
HapII	CCGG	8 cut(s)	36, 276, 488, 503, 517, 671, 755, 806
Hin1II	CATG	1 cut(s)	134
HincII	GTYRAC	1 cut(s)	866
HindII	GTYRAC	1 cut(s)	866
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	1 cut(s)	282
HpaII	CCGG	8 cut(s)	36, 276, 488, 503, 517, 671, 755, 806
HphI	GGTGA	3 cut(s)	260, 574, 1043
Hpy166II	GTNNAC	4 cut(s)	251, 656, 658, 866
Hpy188I	TCNGA	5 cut(s)	65, 138, 185, 642, 694
Hpy188III	TCNNGA	7 cut(s)	327, 379, 503, 608, 682, 781, 971
Hpy8I	GTNNAC	4 cut(s)	251, 656, 658, 866
Hpy99I	CGWCG	2 cut(s)	409, 412
HpyAV	CCTTC	2 cut(s)	290, 778
HpyCH4III	ACNGT	2 cut(s)	478, 751
HpyCH4IV	ACGT	2 cut(s)	495, 678
HpyCH4V	TGCA	5 cut(s)	239, 270, 352, 542, 699
HpyF10VI	GCNNNNNNNGC	1 cut(s)	497
HpyF3I	CTNAG	2 cut(s)	54, 391
HpySE526I	ACGT	2 cut(s)	495, 678
Hsp92II	CATG	1 cut(s)	134
Kpn2I	TCCGGA	1 cut(s)	502
Kzo9I	GATC	5 cut(s)	25, 144, 604, 613, 967
LmnI	GCTCC	3 cut(s)	399, 505, 960
Lsp1109I	GCAGC	1 cut(s)	251
LweI	GCATC	4 cut(s)	178, 421, 712, 976
MaeII	ACGT	2 cut(s)	495, 678
MaeIII	GTNAC	5 cut(s)	38, 202, 341, 359, 562
MalI	GATC	5 cut(s)	27, 146, 606, 615, 969
MboI	GATC	5 cut(s)	25, 144, 604, 613, 967
MflI	RGATCY	3 cut(s)	25, 604, 613
MhlI	GDGCHC	3 cut(s)	404, 791, 1048
MluCI	AATT	1 cut(s)	264
MnlI	CCTC	7 cut(s)	104, 187, 636, 700, 802, 892, 1012
MroI	TCCGGA	1 cut(s)	502
MroXI	GAANNNNTTC	1 cut(s)	132
MseI	TTAA	8 cut(s)	20, 96, 117, 189, 372, 417, 650, 950
MslI	CAYNNNNRTG	1 cut(s)	227
MspA1I	CMGCKG	1 cut(s)	242
MspCI	CTTAAG	3 cut(s)	19, 116, 371
MspI	CCGG	8 cut(s)	36, 276, 488, 503, 517, 671, 755, 806
MspR9I	CCNGG	1 cut(s)	517
MwoI	GCNNNNNNNGC	1 cut(s)	497
NciI	CCSGG	1 cut(s)	517
NdeII	GATC	5 cut(s)	25, 144, 604, 613, 967
NlaIII	CATG	1 cut(s)	134
NlaIV	GGNNCC	3 cut(s)	34, 401, 789
NmuCI	GTSAC	3 cut(s)	341, 359, 562
NspI	RCATGY	1 cut(s)	134
PaeR7I	CTCGAG	1 cut(s)	377
PceI	AGGCCT	1 cut(s)	114
PciI	ACATGT	1 cut(s)	130
PdmI	GAANNNNTTC	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	282
PfoI	TCCNGGA	1 cut(s)	515
PkrI	GCNGC	2 cut(s)	241, 804
PscI	ACATGT	1 cut(s)	130
PspEI	GGTNACC	1 cut(s)	562
PspN4I	GGNNCC	3 cut(s)	34, 401, 789
PspOMI	GGGCCC	1 cut(s)	787
PspPI	GGNCC	2 cut(s)	787, 788
PsuI	RGATCY	3 cut(s)	25, 604, 613
PvuII	CAGCTG	1 cut(s)	242
RsaI	GTAC	3 cut(s)	657, 753, 925
RsaNI	GTAC	3 cut(s)	656, 752, 924
RseI	CAYNNNNRTG	1 cut(s)	227
SalI	GTCGAC	1 cut(s)	864
SaqAI	TTAA	8 cut(s)	20, 96, 117, 189, 372, 417, 650, 950
SatI	GCNGC	2 cut(s)	240, 803
Sau3AI	GATC	5 cut(s)	25, 144, 604, 613, 967
Sau96I	GGNCC	2 cut(s)	787, 788
ScrFI	CCNGG	1 cut(s)	517
SduI	GDGCHC	3 cut(s)	404, 791, 1048
SetI	ASST	9 cut(s)	60, 198, 244, 338, 372, 378, 498, 569, 681
SfaNI	GCATC	4 cut(s)	178, 421, 712, 976
Sfr274I	CTCGAG	1 cut(s)	377
SlaI	CTCGAG	1 cut(s)	377
SmiMI	CAYNNNNRTG	1 cut(s)	227
SmlI	CTYRAG	4 cut(s)	19, 116, 371, 377
SmoI	CTYRAG	4 cut(s)	19, 116, 371, 377
Sse9I	AATT	1 cut(s)	264
SseBI	AGGCCT	1 cut(s)	114
SsiI	CCGC	1 cut(s)	803
StuI	AGGCCT	1 cut(s)	114
StyD4I	CCNGG	1 cut(s)	515
TaaI	ACNGT	2 cut(s)	478, 751
TaiI	ACGT	2 cut(s)	498, 681
TaqI	TCGA	4 cut(s)	105, 378, 762, 865
TasI	AATT	1 cut(s)	264
TatI	WGTACW	1 cut(s)	655
TauI	GCSGC	1 cut(s)	805
TfiI	GAWTC	1 cut(s)	282
Tru1I	TTAA	8 cut(s)	20, 96, 117, 189, 372, 417, 650, 950
Tru9I	TTAA	8 cut(s)	20, 96, 117, 189, 372, 417, 650, 950
TseFI	GTSAC	3 cut(s)	341, 359, 562
TseI	GCWGC	1 cut(s)	239
Tsp45I	GTSAC	3 cut(s)	341, 359, 562
TspDTI	ATGAA	1 cut(s)	141
TspGWI	ACGGA	3 cut(s)	93, 634, 941
Vha464I	CTTAAG	3 cut(s)	19, 116, 371
XapI	RAATTY	1 cut(s)	264
XceI	RCATGY	1 cut(s)	134
XhoI	CTCGAG	1 cut(s)	377
XmiI	GTMKAC	1 cut(s)	865
XmnI	GAANNNNTTC	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.