Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0008926

Physical Location & Seq

Genomic Coordinates Forward (+)

24717998 .. 24718444

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG238700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGTACGCGTTTCCAGGGAATGTAGACATCTTCTTTCTCGAATTTTCGTTGCTAACCCCGAAAAGGTTTTACTACTCCTTAGAACATAGCGAGCAATGGAATGTCTGTCTGTTGATGCACATTCAATTTGAATCATTAAATTTTATACCTGAACTCCTGAATTCTATGCAGAGAATAACAATCCCAGAGATAAAGCAGCACCCCTGGTTTCTAAAAAATTTACCAGAGGAATTCATGGATGAAGACAGCCTGCAAATTGGTGATGATCAAAAAAATGAAACCTCCCAAAGTGTTGAAGAAATAGTGTCCATTATTCAAGAGGCTCGAAAAGCTGGTGATGGCATCAAAGTTGGTGGACATTTTCTTGGAAGTATGGACCTTGATGAGATAGATGATACTGACATCGATGATATAGAAACAAGTGGTGATTTTGTATGTGCATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

148

Amino Acids

17.07

Weight (kDa)

4.17

Isoelectric Point (pI)

50.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40010
fragaria_vesca	FvH4_1g20310 FvH4_1g20310 FvH4_1g20310 FvH4_1g20310 FvH4_1g20310
malus_domestica	MD01G1035000.v1.1 MD15G1321000.v1.1
prunus_persica	Prupe.6G192200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0112461
rosa_laevigata	RLG00000017982
rosa_multiflora	Rmu_sc0012231.1_g000005 Rmu_sc0036399.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131410 Rroxscaffold_3G00222500
rosa_rugosa	Rorug02G0181000
rosa_samantha	Rh2AG234100 Rh2BG247600 Rh2CG238600 Rh2CG238700 Rh2DG241700
rosa_wichuraiana	Rw2G018130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	24
AccII	CGCG	1 cut(s)	8
AcsI	RAATTY	5 cut(s)	41, 139, 160, 217, 230
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	63
AflIII	ACRYGT	1 cut(s)	6
AgsI	TTSAA	4 cut(s)	125, 131, 296, 317
AjnI	CCWGG	2 cut(s)	13, 203
AluBI	AGCT	1 cut(s)	332
AluI	AGCT	1 cut(s)	332
ApeKI	GCWGC	1 cut(s)	196
ApoI	RAATTY	5 cut(s)	41, 139, 160, 217, 230
AspS9I	GGNCC	1 cut(s)	376
AsuHPI	GGTGA	3 cut(s)	272, 347, 437
AvaII	GGWCC	1 cut(s)	376
BbsI	GAAGAC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	1 cut(s)	332
BciT130I	CCWGG	2 cut(s)	15, 205
BclI	TGATCA	1 cut(s)	265
BisI	GCNGC	1 cut(s)	197
BlsI	GCNGC	1 cut(s)	198
Bme1390I	CCNGG	2 cut(s)	15, 205
Bme18I	GGWCC	1 cut(s)	376
BmgT120I	GGNCC	1 cut(s)	376
BmrFI	CCNGG	2 cut(s)	15, 205
BmsI	GCATC	2 cut(s)	105, 351
BpiI	GAAGAC	1 cut(s)	249
Bsa29I	ATCGAT	1 cut(s)	405
BsaJI	CCNNGG	2 cut(s)	14, 203
BsaXI	ACNNNNNCTCC	2 cut(s)	138, 168
Bsc4I	CCNNNNNNNGG	1 cut(s)	63
Bse3DI	GCAATG	1 cut(s)	101
BseBI	CCWGG	2 cut(s)	15, 205
BseCI	ATCGAT	1 cut(s)	405
BseDI	CCNNGG	2 cut(s)	14, 203
BseGI	GGATG	1 cut(s)	244
BseLI	CCNNNNNNNGG	1 cut(s)	63
BseMI	GCAATG	1 cut(s)	101
BseXI	GCAGC	1 cut(s)	208
Bsh1236I	CGCG	1 cut(s)	8
BshVI	ATCGAT	1 cut(s)	405
BslI	CCNNNNNNNGG	1 cut(s)	63
Bsp143I	GATC	1 cut(s)	265
BspDI	ATCGAT	1 cut(s)	405
BspFNI	CGCG	1 cut(s)	8
BsrDI	GCAATG	1 cut(s)	101
BssECI	CCNNGG	2 cut(s)	14, 203
BssMI	GATC	1 cut(s)	265
Bst2UI	CCWGG	2 cut(s)	15, 205
BstC8I	GCNNGC	2 cut(s)	92, 251
BstDEI	CTNAG	1 cut(s)	79
BstF5I	GGATG	1 cut(s)	244
BstFNI	CGCG	1 cut(s)	8
BstKTI	GATC	1 cut(s)	268
BstMBI	GATC	1 cut(s)	265
BstMWI	GCNNNNNNNGC	1 cut(s)	329
BstNI	CCWGG	2 cut(s)	15, 205
BstSCI	CCNGG	2 cut(s)	13, 203
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	208
BstV2I	GAAGAC	1 cut(s)	249
Bsu15I	ATCGAT	1 cut(s)	405
BsuTUI	ATCGAT	1 cut(s)	405
BtsCI	GGATG	1 cut(s)	244
Cac8I	GCNNGC	2 cut(s)	92, 251
Cfr13I	GGNCC	1 cut(s)	376
ClaI	ATCGAT	1 cut(s)	405
Csp6I	GTAC	1 cut(s)	4
CspCI	CAANNNNNGTGG	2 cut(s)	334, 369
CviAII	CATG	1 cut(s)	235
CviJI	RGCY	3 cut(s)	249, 323, 332
CviKI_1	RGCY	3 cut(s)	249, 323, 332
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	79
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	376
EcoRI	GAATTC	2 cut(s)	160, 230
EcoRII	CCWGG	2 cut(s)	13, 203
FaeI	CATG	1 cut(s)	238
FaiI	YATR	7 cut(s)	87, 146, 167, 236, 374, 413, 436
FatI	CATG	1 cut(s)	234
FbaI	TGATCA	1 cut(s)	265
FblI	GTMKAC	1 cut(s)	24
Fnu4HI	GCNGC	1 cut(s)	197
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	1 cut(s)	197
GluI	GCNGC	1 cut(s)	197
Hin1II	CATG	1 cut(s)	238
HinfI	GANTC	1 cut(s)	131
HphI	GGTGA	3 cut(s)	272, 347, 437
Hpy166II	GTNNAC	2 cut(s)	25, 356
Hpy188III	TCNNGA	3 cut(s)	38, 157, 317
Hpy8I	GTNNAC	2 cut(s)	25, 356
HpyCH4V	TGCA	4 cut(s)	118, 169, 253, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	329
HpyF3I	CTNAG	1 cut(s)	79
Hsp92II	CATG	1 cut(s)	238
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	1 cut(s)	265
LpnPI	CCDG	9 cut(s)	27, 162, 170, 190, 198, 217, 237, 263, 318
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	2 cut(s)	105, 351
MalI	GATC	1 cut(s)	267
MboI	GATC	1 cut(s)	265
MboII	GAAGA	3 cut(s)	22, 254, 308
MluCI	AATT	7 cut(s)	41, 125, 139, 160, 217, 230, 255
MluI	ACGCGT	1 cut(s)	6
MnlI	CCTC	3 cut(s)	220, 292, 313
MseI	TTAA	1 cut(s)	137
MspR9I	CCNGG	2 cut(s)	15, 205
MvaI	CCWGG	2 cut(s)	15, 205
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	1 cut(s)	329
NdeII	GATC	1 cut(s)	265
NlaIII	CATG	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	131
PkrI	GCNGC	1 cut(s)	198
Psp6I	CCWGG	2 cut(s)	13, 203
PspGI	CCWGG	2 cut(s)	13, 203
PspPI	GGNCC	1 cut(s)	376
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	137
SatI	GCNGC	1 cut(s)	197
Sau3AI	GATC	1 cut(s)	265
Sau96I	GGNCC	1 cut(s)	376
ScrFI	CCNGG	2 cut(s)	15, 205
SetI	ASST	5 cut(s)	68, 151, 284, 334, 381
SfaNI	GCATC	2 cut(s)	105, 351
SinI	GGWCC	1 cut(s)	376
Sse9I	AATT	7 cut(s)	41, 125, 139, 160, 217, 230, 255
StyD4I	CCNGG	2 cut(s)	13, 203
TaqI	TCGA	3 cut(s)	39, 325, 405
TasI	AATT	7 cut(s)	41, 125, 139, 160, 217, 230, 255
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TseI	GCWGC	1 cut(s)	196
TspDTI	ATGAA	3 cut(s)	223, 255, 291
VpaK11BI	GGWCC	1 cut(s)	376
XapI	RAATTY	5 cut(s)	41, 139, 160, 217, 230
XmiI	GTMKAC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.