Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008926

Physical Location & Seq

Genomic Coordinates Forward (+)

24568658 .. 24571372

Gene Structure 2715 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG241700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGAATATGCAGCCGGAGGAGAACTTTTTGAAAGAATATGCAATGCTGGTAGATTCAGTGAAGACGAGGCCAGATTTTTCTTCCAGCAGCTGATTTCAGGAGTCAGTTATTGCCATTCAATGCAAATTTGTCACAGAGATCTTAAACTGGAGAACACACTTCTAGATTCAAGCTCAGCTCCACGTCTCAAAATTTGTGATTTTGGTTATTCCAAGTCATCTGTGCTGCATTCACAACCCAAATCAACTGTTGGAACACCTGCCTACATTGCACCAGAAGTCCTGTCAAGAAAAGAGTATGATGGGAAGATAGCAGATGTTTGGTCTTGTGGGGTTACATTATATGTGATGCTGGTTGGTGCTTATCCCTTTGAAGATCCAGAAGATCCCAGAAATTTCAGGAAAACACTTCAGAAAATTCTGAGCGTCAGCTATTCAATTCCTGACTATGTACGCGTTTCCAGGGAATGTAGACATCTTCTTTCTCGAATTTTCGTTGCTAACCCCGAAAAGAGAATAACAATCCCAGAGATAAAGCAGCACCCCTGGTTTCTAAAAAATTTACCAGAGGAATTCATGGATGAAGACAGCCTGCAAATTGGTGATGATCAAAAAAATGAAACCTCCCAAAGTGTTGAAGAAATAGTGTCCATTATTCAAGAGGCTCGAAAAGCTGGTGATGGAATCAAAGTTGGCGGACATTTTCTTGGAAGTATGGACCTTGATGAGATAGATGATACTGACATCGATGATATAGAAACAAGTGGTGATTTTGTATGTGCATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

262

Amino Acids

29.61

Weight (kDa)

4.79

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 184	2.4e-53	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	1 - 180	2.1e-19	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40010
fragaria_vesca	FvH4_1g20310 FvH4_1g20310 FvH4_1g20310 FvH4_1g20310 FvH4_1g20310
malus_domestica	MD01G1035000.v1.1 MD15G1321000.v1.1
prunus_persica	Prupe.6G192200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0112461
rosa_laevigata	RLG00000017982
rosa_multiflora	Rmu_sc0012231.1_g000005 Rmu_sc0036399.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131410 Rroxscaffold_3G00222500
rosa_rugosa	Rorug02G0181000
rosa_samantha	Rh2AG234100 Rh2BG247600 Rh2CG238600 Rh2CG238700 Rh2DG241700
rosa_wichuraiana	Rw2G018130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	268
Acc36I	ACCTGC	1 cut(s)	268
AccI	GTMKAC	1 cut(s)	472
AccII	CGCG	1 cut(s)	456
AciI	CCGC	1 cut(s)	696
AclWI	GGATC	2 cut(s)	371, 380
AcsI	RAATTY	7 cut(s)	126, 192, 394, 417, 489, 559, 572
AcuI	CTGAAG	1 cut(s)	395
AfaI	GTAC	1 cut(s)	453
AflIII	ACRYGT	1 cut(s)	454
AgsI	TTSAA	7 cut(s)	32, 120, 171, 374, 438, 638, 659
AjiI	CACGTC	1 cut(s)	185
AjnI	CCWGG	2 cut(s)	461, 545
AluBI	AGCT	5 cut(s)	91, 174, 179, 432, 674
AluI	AGCT	5 cut(s)	91, 174, 179, 432, 674
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	2 cut(s)	371, 380
AlwNI	CAGNNNCTG	1 cut(s)	91
AoxI	GGCC	1 cut(s)	69
ApeKI	GCWGC	4 cut(s)	11, 88, 226, 538
ApoI	RAATTY	7 cut(s)	126, 192, 394, 417, 489, 559, 572
AspS9I	GGNCC	1 cut(s)	718
AsuHPI	GGTGA	3 cut(s)	614, 689, 779
AvaII	GGWCC	1 cut(s)	718
BbsI	GAAGAC	2 cut(s)	69, 591
BbvI	GCAGC	4 cut(s)	23, 100, 213, 550
BccI	CCATC	2 cut(s)	296, 674
BciT130I	CCWGG	2 cut(s)	463, 547
BclI	TGATCA	1 cut(s)	607
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	1 cut(s)	164
BfuAI	ACCTGC	1 cut(s)	268
BglII	AGATCT	1 cut(s)	139
BisI	GCNGC	4 cut(s)	12, 89, 227, 539
BlpI	GCTNAGC	1 cut(s)	175
BlsI	GCNGC	4 cut(s)	13, 90, 228, 540
Bme1390I	CCNGG	2 cut(s)	463, 547
Bme18I	GGWCC	1 cut(s)	718
BmgBI	CACGTC	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	718
BmrFI	CCNGG	2 cut(s)	463, 547
BmsI	GCATC	1 cut(s)	339
BpiI	GAAGAC	2 cut(s)	69, 591
BpmI	CTGGAG	1 cut(s)	170
Bpu1102I	GCTNAGC	1 cut(s)	175
Bsa29I	ATCGAT	1 cut(s)	747
BsaJI	CCNNGG	2 cut(s)	462, 545
Bse1I	ACTGG	1 cut(s)	153
Bse3DI	GCAATG	2 cut(s)	49, 267
BseBI	CCWGG	2 cut(s)	463, 547
BseCI	ATCGAT	1 cut(s)	747
BseDI	CCNNGG	2 cut(s)	462, 545
BseGI	GGATG	1 cut(s)	586
BseMI	GCAATG	2 cut(s)	49, 267
BseMII	CTCAG	2 cut(s)	189, 413
BseNI	ACTGG	1 cut(s)	153
BseRI	GAGGAG	1 cut(s)	33
BseXI	GCAGC	4 cut(s)	23, 100, 213, 550
Bsh1236I	CGCG	1 cut(s)	456
BshFI	GGCC	1 cut(s)	71
BshVI	ATCGAT	1 cut(s)	747
BsiSI	CCGG	1 cut(s)	15
BsmAI	GTCTC	1 cut(s)	191
BsmBI	CGTCTC	1 cut(s)	191
BsmI	GAATGC	1 cut(s)	229
BsnI	GGCC	1 cut(s)	71
Bsp143I	GATC	4 cut(s)	139, 376, 385, 607
Bsp1720I	GCTNAGC	1 cut(s)	175
BspACI	CCGC	1 cut(s)	696
BspANI	GGCC	1 cut(s)	71
BspCNI	CTCAG	2 cut(s)	188, 414
BspDI	ATCGAT	1 cut(s)	747
BspFNI	CGCG	1 cut(s)	456
BspMI	ACCTGC	1 cut(s)	268
BspPI	GGATC	2 cut(s)	371, 380
BsrDI	GCAATG	2 cut(s)	49, 267
BsrI	ACTGG	1 cut(s)	153
BssECI	CCNNGG	2 cut(s)	462, 545
BssMI	GATC	4 cut(s)	139, 376, 385, 607
Bst2UI	CCWGG	2 cut(s)	463, 547
Bst4CI	ACNGT	1 cut(s)	250
BstC8I	GCNNGC	1 cut(s)	593
BstDEI	CTNAG	2 cut(s)	175, 422
BstF5I	GGATG	1 cut(s)	586
BstFNI	CGCG	1 cut(s)	456
BstKTI	GATC	4 cut(s)	142, 379, 388, 610
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	4 cut(s)	139, 376, 385, 607
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 671
BstNI	CCWGG	2 cut(s)	463, 547
BstSCI	CCNGG	2 cut(s)	461, 545
BstUI	CGCG	1 cut(s)	456
BstV1I	GCAGC	4 cut(s)	23, 100, 213, 550
BstV2I	GAAGAC	2 cut(s)	69, 591
BstX2I	RGATCY	3 cut(s)	139, 376, 385
BstYI	RGATCY	3 cut(s)	139, 376, 385
Bsu15I	ATCGAT	1 cut(s)	747
BsuRI	GGCC	1 cut(s)	71
BsuTUI	ATCGAT	1 cut(s)	747
BtrI	CACGTC	1 cut(s)	185
BtsCI	GGATG	1 cut(s)	586
BtsIMutI	CAGTG	1 cut(s)	64
BveI	ACCTGC	1 cut(s)	268
Cac8I	GCNNGC	1 cut(s)	593
CaiI	CAGNNNCTG	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	718
ClaI	ATCGAT	1 cut(s)	747
CseI	GACGC	1 cut(s)	415
Csp6I	GTAC	1 cut(s)	452
CviAII	CATG	1 cut(s)	577
CviJI	RGCY	9 cut(s)	14, 71, 91, 174, 179, 432, 591, 665, 674
CviKI_1	RGCY	9 cut(s)	14, 71, 91, 174, 179, 432, 591, 665, 674
CviQI	GTAC	1 cut(s)	452
DdeI	CTNAG	2 cut(s)	175, 422
DpnI	GATC	4 cut(s)	141, 378, 387, 609
DpnII	GATC	4 cut(s)	139, 376, 385, 607
EciI	GGCGGA	1 cut(s)	711
Eco47I	GGWCC	1 cut(s)	718
Eco57I	CTGAAG	1 cut(s)	395
EcoRI	GAATTC	1 cut(s)	572
EcoRII	CCWGG	2 cut(s)	461, 545
Esp3I	CGTCTC	1 cut(s)	191
FaeI	CATG	1 cut(s)	580
FatI	CATG	1 cut(s)	576
FbaI	TGATCA	1 cut(s)	607
FblI	GTMKAC	1 cut(s)	472
Fnu4HI	GCNGC	4 cut(s)	12, 89, 227, 539
FokI	GGATG	1 cut(s)	593
Fsp4HI	GCNGC	4 cut(s)	12, 89, 227, 539
FspBI	CTAG	1 cut(s)	164
GluI	GCNGC	4 cut(s)	12, 89, 227, 539
GsuI	CTGGAG	1 cut(s)	170
HaeIII	GGCC	1 cut(s)	71
HapII	CCGG	1 cut(s)	15
HgaI	GACGC	1 cut(s)	415
Hin1II	CATG	1 cut(s)	580
HinfI	GANTC	4 cut(s)	54, 102, 167, 684
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	3 cut(s)	614, 689, 779
Hpy166II	GTNNAC	1 cut(s)	473
Hpy188I	TCNGA	2 cut(s)	414, 423
Hpy188III	TCNNGA	8 cut(s)	99, 164, 288, 380, 400, 443, 486, 659
Hpy8I	GTNNAC	1 cut(s)	473
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4IV	ACGT	1 cut(s)	184
HpyCH4V	TGCA	7 cut(s)	11, 42, 124, 229, 272, 595, 782
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 671
HpyF3I	CTNAG	2 cut(s)	175, 422
HpySE526I	ACGT	1 cut(s)	184
Hsp92II	CATG	1 cut(s)	580
Ksp22I	TGATCA	1 cut(s)	607
Kzo9I	GATC	4 cut(s)	139, 376, 385, 607
LmnI	GCTCC	1 cut(s)	184
Lsp1109I	GCAGC	4 cut(s)	23, 100, 213, 550
LweI	GCATC	1 cut(s)	339
MaeI	CTAG	1 cut(s)	164
MaeII	ACGT	1 cut(s)	184
MaeIII	GTNAC	2 cut(s)	131, 334
MalI	GATC	4 cut(s)	141, 378, 387, 609
MboI	GATC	4 cut(s)	139, 376, 385, 607
MboII	GAAGA	8 cut(s)	73, 74, 319, 386, 395, 470, 596, 650
MflI	RGATCY	3 cut(s)	139, 376, 385
MluCI	AATT	9 cut(s)	126, 192, 394, 417, 438, 489, 559, 572, 597
MluI	ACGCGT	1 cut(s)	454
MlyI	GAGTC	1 cut(s)	111
MmeI	TCCRAC	1 cut(s)	232
MnlI	CCTC	5 cut(s)	11, 61, 562, 634, 655
MseI	TTAA	1 cut(s)	144
MspA1I	CMGCKG	1 cut(s)	91
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	2 cut(s)	463, 547
Mva1269I	GAATGC	1 cut(s)	229
MvaI	CCWGG	2 cut(s)	463, 547
MvnI	CGCG	1 cut(s)	456
MwoI	GCNNNNNNNGC	2 cut(s)	269, 671
NdeII	GATC	4 cut(s)	139, 376, 385, 607
NlaIII	CATG	1 cut(s)	580
NmuCI	GTSAC	1 cut(s)	131
PaqCI	CACCTGC	1 cut(s)	268
PctI	GAATGC	1 cut(s)	229
PfeI	GAWTC	3 cut(s)	54, 167, 684
PkrI	GCNGC	4 cut(s)	13, 90, 228, 540
PleI	GAGTC	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	110
Psp6I	CCWGG	2 cut(s)	461, 545
PspGI	CCWGG	2 cut(s)	461, 545
PspPI	GGNCC	1 cut(s)	718
PstNI	CAGNNNCTG	1 cut(s)	91
PsuI	RGATCY	3 cut(s)	139, 376, 385
PvuII	CAGCTG	1 cut(s)	91
RsaI	GTAC	1 cut(s)	453
RsaNI	GTAC	1 cut(s)	452
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	4 cut(s)	12, 89, 227, 539
Sau3AI	GATC	4 cut(s)	139, 376, 385, 607
Sau96I	GGNCC	1 cut(s)	718
SchI	GAGTC	1 cut(s)	111
ScrFI	CCNGG	2 cut(s)	463, 547
SetI	ASST	9 cut(s)	93, 176, 181, 187, 262, 434, 626, 676, 723
SfaNI	GCATC	1 cut(s)	339
SinI	GGWCC	1 cut(s)	718
Sse9I	AATT	9 cut(s)	126, 192, 394, 417, 438, 489, 559, 572, 597
SsiI	CCGC	1 cut(s)	696
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	2 cut(s)	461, 545
TaaI	ACNGT	1 cut(s)	250
TaiI	ACGT	1 cut(s)	187
TaqI	TCGA	3 cut(s)	487, 667, 747
TasI	AATT	9 cut(s)	126, 192, 394, 417, 438, 489, 559, 572, 597
TfiI	GAWTC	3 cut(s)	54, 167, 684
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	4 cut(s)	11, 88, 226, 538
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	3 cut(s)	565, 597, 633
TspRI	CASTG	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	718
XapI	RAATTY	7 cut(s)	126, 192, 394, 417, 489, 559, 572
XbaI	TCTAGA	1 cut(s)	163
XmiI	GTMKAC	1 cut(s)	472
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.