Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0008926

Physical Location & Seq

Genomic Coordinates Forward (+)

25260333 .. 25262573

Gene Structure 2241 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG234100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGAGCGCTATGAGATAGTGAAAGATATTGGTTCTGGGAACTTTGGTGTTGCAAAATTGGTGAAGGACAAATGGAGTGGTGAGCTCTATGCCGTCAAGTTCATTGAAAGAGGCCAGAAGCAAATTTGTCACAGAGATCTTAAACTGGAGAACACACTTCTAGATTCAAGCTCAGCTCCACGTCTCAAAATTTGTGATTTTGGTTATTCCAAGTCATCTGTGCTGCATTCACAACCCAAATCAACTGTTGGAACACCTGCCTACATTGCACCAGAAGTCCTGTCAAGAAAAGAGTATGATGGGAAGAAAATTCTGAGCGTCAGCTATTCAATTCCTGACTATGTACGCGTTTCCAGGGAATGTAGACATCTTCTTTCTCGAATTTTCGTTGCTAACCCCGAAAAGAGAATAACAATCCCAGAGATAAAGCAGCACCCCTGGTTTCTAAAAAATTTACCAGAGGAATTCATGGATGAAGACAGCCTGCAAATTGGTGATGATCAAAAAAATGAAACCTCCCAAAGTGTTGAAGAAATAGTGTCCATTATTCAAGAGGCTCGAAAAGCTGGTGATGGAATCAAAGTTGGCGGACATTTTCTTGGAAGTATGGACCTTGATGAGATAGATGATACTGACATCGATGATATAGAAACAAGTGGTGATTTTGTATGTGCATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

226

Amino Acids

25.49

Weight (kDa)

5.15

Isoelectric Point (pI)

39.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	39 - 100	5.7e-06	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	40 - 102	2.9e-17	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40010
fragaria_vesca	FvH4_1g20310 FvH4_1g20310 FvH4_1g20310 FvH4_1g20310 FvH4_1g20310
malus_domestica	MD01G1035000.v1.1 MD15G1321000.v1.1
prunus_persica	Prupe.6G192200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0112461
rosa_laevigata	RLG00000017982
rosa_multiflora	Rmu_sc0012231.1_g000005 Rmu_sc0036399.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131410 Rroxscaffold_3G00222500
rosa_rugosa	Rorug02G0181000
rosa_samantha	Rh2AG234100 Rh2BG247600 Rh2CG238600 Rh2CG238700 Rh2DG241700
rosa_wichuraiana	Rw2G018130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	265
Acc36I	ACCTGC	1 cut(s)	265
AccI	GTMKAC	1 cut(s)	364
AccII	CGCG	1 cut(s)	348
AciI	CCGC	1 cut(s)	588
AcsI	RAATTY	6 cut(s)	123, 189, 309, 381, 451, 464
AfaI	GTAC	1 cut(s)	345
AfeI	AGCGCT	1 cut(s)	8
AflIII	ACRYGT	1 cut(s)	346
AgsI	TTSAA	5 cut(s)	107, 168, 330, 530, 551
AjiI	CACGTC	1 cut(s)	182
AjnI	CCWGG	2 cut(s)	353, 437
AluBI	AGCT	5 cut(s)	85, 171, 176, 324, 566
AluI	AGCT	5 cut(s)	85, 171, 176, 324, 566
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	188
Aor51HI	AGCGCT	1 cut(s)	8
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	2 cut(s)	223, 430
ApoI	RAATTY	6 cut(s)	123, 189, 309, 381, 451, 464
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	610
AsuHPI	GGTGA	5 cut(s)	73, 92, 506, 581, 671
AvaII	GGWCC	1 cut(s)	610
BanII	GRGCYC	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	483
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	2 cut(s)	210, 442
BccI	CCATC	2 cut(s)	293, 566
BceAI	ACGGC	1 cut(s)	77
BciT130I	CCWGG	2 cut(s)	355, 439
BclI	TGATCA	1 cut(s)	499
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	1 cut(s)	161
BfoI	RGCGCY	1 cut(s)	10
BfuAI	ACCTGC	1 cut(s)	265
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	2 cut(s)	224, 431
BlpI	GCTNAGC	1 cut(s)	172
BlsI	GCNGC	2 cut(s)	225, 432
Bme1390I	CCNGG	2 cut(s)	355, 439
Bme18I	GGWCC	1 cut(s)	610
BmgBI	CACGTC	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	610
BmrFI	CCNGG	2 cut(s)	355, 439
BpiI	GAAGAC	1 cut(s)	483
BpmI	CTGGAG	1 cut(s)	167
Bpu1102I	GCTNAGC	1 cut(s)	172
Bsa29I	ATCGAT	1 cut(s)	639
BsaJI	CCNNGG	2 cut(s)	354, 437
Bse1I	ACTGG	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	264
BseBI	CCWGG	2 cut(s)	355, 439
BseCI	ATCGAT	1 cut(s)	639
BseDI	CCNNGG	2 cut(s)	354, 437
BseGI	GGATG	1 cut(s)	478
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	2 cut(s)	186, 305
BseNI	ACTGG	1 cut(s)	150
BseXI	GCAGC	2 cut(s)	210, 442
Bsh1236I	CGCG	1 cut(s)	348
BshFI	GGCC	1 cut(s)	114
BshVI	ATCGAT	1 cut(s)	639
BsiHKAI	GWGCWC	1 cut(s)	87
BsmAI	GTCTC	1 cut(s)	188
BsmBI	CGTCTC	1 cut(s)	188
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	2 cut(s)	136, 499
Bsp1720I	GCTNAGC	1 cut(s)	172
BspACI	CCGC	1 cut(s)	588
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	2 cut(s)	185, 306
BspDI	ATCGAT	1 cut(s)	639
BspFNI	CGCG	1 cut(s)	348
BspMI	ACCTGC	1 cut(s)	265
BsrDI	GCAATG	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	150
BssECI	CCNNGG	2 cut(s)	354, 437
BssMI	GATC	2 cut(s)	136, 499
Bst2UI	CCWGG	2 cut(s)	355, 439
Bst4CI	ACNGT	1 cut(s)	247
BstC8I	GCNNGC	1 cut(s)	485
BstDEI	CTNAG	2 cut(s)	172, 314
BstF5I	GGATG	1 cut(s)	478
BstFNI	CGCG	1 cut(s)	348
BstH2I	RGCGCY	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	2 cut(s)	139, 502
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	2 cut(s)	136, 499
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 563
BstNI	CCWGG	2 cut(s)	355, 439
BstSCI	CCNGG	2 cut(s)	353, 437
BstUI	CGCG	1 cut(s)	348
BstV1I	GCAGC	2 cut(s)	210, 442
BstV2I	GAAGAC	1 cut(s)	483
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
Bsu15I	ATCGAT	1 cut(s)	639
BsuRI	GGCC	1 cut(s)	114
BsuTUI	ATCGAT	1 cut(s)	639
BtrI	CACGTC	1 cut(s)	182
BtsCI	GGATG	1 cut(s)	478
BveI	ACCTGC	1 cut(s)	265
Cac8I	GCNNGC	1 cut(s)	485
CfoI	GCGC	1 cut(s)	9
Cfr13I	GGNCC	1 cut(s)	610
ClaI	ATCGAT	1 cut(s)	639
CseI	GACGC	1 cut(s)	307
Csp6I	GTAC	1 cut(s)	344
CspCI	CAANNNNNGTGG	2 cut(s)	58, 93
CviAII	CATG	1 cut(s)	469
CviJI	RGCY	8 cut(s)	85, 114, 171, 176, 324, 483, 557, 566
CviKI_1	RGCY	8 cut(s)	85, 114, 171, 176, 324, 483, 557, 566
CviQI	GTAC	1 cut(s)	344
DdeI	CTNAG	2 cut(s)	172, 314
DpnI	GATC	2 cut(s)	138, 501
DpnII	GATC	2 cut(s)	136, 499
EciI	GGCGGA	1 cut(s)	603
Ecl136II	GAGCTC	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	610
Eco47III	AGCGCT	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	85
EcoICRI	GAGCTC	1 cut(s)	85
EcoRI	GAATTC	1 cut(s)	464
EcoRII	CCWGG	2 cut(s)	353, 437
EcoT38I	GRGCYC	1 cut(s)	87
Esp3I	CGTCTC	1 cut(s)	188
FaeI	CATG	1 cut(s)	472
FaiI	YATR	8 cut(s)	12, 90, 297, 342, 470, 608, 647, 670
FatI	CATG	1 cut(s)	468
FbaI	TGATCA	1 cut(s)	499
FblI	GTMKAC	1 cut(s)	364
Fnu4HI	GCNGC	2 cut(s)	224, 431
FokI	GGATG	1 cut(s)	485
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	2 cut(s)	224, 431
FspBI	CTAG	1 cut(s)	161
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	2 cut(s)	224, 431
GsuI	CTGGAG	1 cut(s)	167
HaeII	RGCGCY	1 cut(s)	10
HaeIII	GGCC	1 cut(s)	114
HgaI	GACGC	1 cut(s)	307
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	1 cut(s)	472
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HinfI	GANTC	2 cut(s)	164, 576
HphI	GGTGA	5 cut(s)	73, 92, 506, 581, 671
Hpy166II	GTNNAC	1 cut(s)	365
Hpy188I	TCNGA	1 cut(s)	315
Hpy188III	TCNNGA	5 cut(s)	161, 285, 335, 378, 551
Hpy8I	GTNNAC	1 cut(s)	365
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	1 cut(s)	181
HpyCH4V	TGCA	5 cut(s)	53, 226, 269, 487, 674
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 563
HpyF3I	CTNAG	2 cut(s)	172, 314
HpySE526I	ACGT	1 cut(s)	181
Hsp92II	CATG	1 cut(s)	472
HspAI	GCGC	1 cut(s)	7
Ksp22I	TGATCA	1 cut(s)	499
Kzo9I	GATC	2 cut(s)	136, 499
LmnI	GCTCC	2 cut(s)	4, 181
Lsp1109I	GCAGC	2 cut(s)	210, 442
MaeI	CTAG	1 cut(s)	161
MaeII	ACGT	1 cut(s)	181
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	2 cut(s)	138, 501
MboI	GATC	2 cut(s)	136, 499
MboII	GAAGA	4 cut(s)	316, 362, 488, 542
MflI	RGATCY	1 cut(s)	136
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	9 cut(s)	56, 123, 189, 309, 330, 381, 451, 464, 489
MluI	ACGCGT	1 cut(s)	346
MmeI	TCCRAC	1 cut(s)	229
MnlI	CCTC	4 cut(s)	104, 454, 526, 547
MseI	TTAA	1 cut(s)	141
MspR9I	CCNGG	2 cut(s)	355, 439
Mva1269I	GAATGC	1 cut(s)	226
MvaI	CCWGG	2 cut(s)	355, 439
MvnI	CGCG	1 cut(s)	348
MwoI	GCNNNNNNNGC	2 cut(s)	266, 563
NdeII	GATC	2 cut(s)	136, 499
NlaIII	CATG	1 cut(s)	472
NmuCI	GTSAC	1 cut(s)	128
PaqCI	CACCTGC	1 cut(s)	265
PctI	GAATGC	1 cut(s)	226
PfeI	GAWTC	2 cut(s)	164, 576
PkrI	GCNGC	2 cut(s)	225, 432
Psp124BI	GAGCTC	1 cut(s)	87
Psp6I	CCWGG	2 cut(s)	353, 437
PspGI	CCWGG	2 cut(s)	353, 437
PspPI	GGNCC	1 cut(s)	610
PsuI	RGATCY	1 cut(s)	136
RsaI	GTAC	1 cut(s)	345
RsaNI	GTAC	1 cut(s)	344
SacI	GAGCTC	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	2 cut(s)	224, 431
Sau3AI	GATC	2 cut(s)	136, 499
Sau96I	GGNCC	1 cut(s)	610
ScrFI	CCNGG	2 cut(s)	355, 439
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	9 cut(s)	87, 173, 178, 184, 259, 326, 518, 568, 615
SinI	GGWCC	1 cut(s)	610
Sse9I	AATT	9 cut(s)	56, 123, 189, 309, 330, 381, 451, 464, 489
SsiI	CCGC	1 cut(s)	588
SspMI	CTAG	1 cut(s)	161
SstI	GAGCTC	1 cut(s)	87
StyD4I	CCNGG	2 cut(s)	353, 437
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	1 cut(s)	184
TaqI	TCGA	3 cut(s)	379, 559, 639
TasI	AATT	9 cut(s)	56, 123, 189, 309, 330, 381, 451, 464, 489
TfiI	GAWTC	2 cut(s)	164, 576
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	2 cut(s)	223, 430
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	4 cut(s)	91, 457, 489, 525
VpaK11BI	GGWCC	1 cut(s)	610
XapI	RAATTY	6 cut(s)	123, 189, 309, 381, 451, 464
XbaI	TCTAGA	1 cut(s)	160
XmiI	GTMKAC	1 cut(s)	364
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.