Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0008926

Physical Location & Seq

Genomic Coordinates Reverse (-)

11830598 .. 11833546

Gene Structure 2949 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1035000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGAAAGGTATGAGATAGTGAAGGATATTGGGTCTGGGAATTTTGGGGTTGCGAAGCTGGTGAAGGACAAATGGAGTGGCGAGCTCTTTGCTATCAAGTTTATTGAGAGAGGCCAGAAGATTGATGAGCATGTACAGAGGGAGATTATGAACCACAGGTCCTTGAAGCATCCGAATATAATAAGATTTAAAGAGGTGTTGTTGACACCAAACGATTTAGCAATTGTGATGGAATATGCAGCTGGAGGTGAACTTTTCGAAAGAATATGCAATGCTGGTCGATTCAGTGAGGACGAAGCAAGATATTTCTTTCAACAGCTCATATCAGGAGTCAGCTATTGTCATTCAATGCAAATTTGCCACAGAGATCTTAAATTGGAGAACACTCTTCTGGATGGAAGCTCAGCCCCGCGTCTCAAAATTTGCGACTTTGGTTATTCCAAGTCATCTGTGTTGCATTCCCAACCGAAATCAACTGTTGGAACACCGGCATACATTGCACCGGAAGTCCTGTCAAGAAAAGGGTATGATGGCAAGATTGCGGATGTTTGGTCATGTGGGGTTACCTTGTATGTCATGCTTGTTGGTGCTTATCCCTTTGAAGATCCAGAAGATCCAAGAAATTTCAGAAAAACACTTCAGAGGATTCTTAGTGTCCACTATTCAATTCCGGCCTATGTACGTGTTTCCATGGAATGCAGACATCTGCTTTCTCGAATCTTCGTTGCTAACCCGGAAAAGAGAATAACTATCCCGGAAATAAAGCAGCATCCGTGGTTTCTAAAAAACATCCCAGTAGAATTCATGGAAGAAATTGGCCTCCCAAACAATAACCAAAATTATGAATCATCATCCCAAAGCAATGAAGAAATATTGGCAATAATTCAAGAAGCTAGAAAACCTGCTGCGAACGGCACCAAATATGGGGGACATTTACTTGGGAGCATGGATCTTGATGAGATAGACGACGCTGAAATAGATGATATAGAGACAAGTGGTGATTTTGTTTGTGCGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

340

Amino Acids

38.47

Weight (kDa)

5.65

Isoelectric Point (pI)

39.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 260	4.2e-73	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	6 - 256	1.5e-30	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40010
fragaria_vesca	FvH4_1g20310 FvH4_1g20310 FvH4_1g20310 FvH4_1g20310 FvH4_1g20310
malus_domestica	MD01G1035000.v1.1 MD15G1321000.v1.1
prunus_persica	Prupe.6G192200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0112461
rosa_laevigata	RLG00000017982
rosa_multiflora	Rmu_sc0012231.1_g000005 Rmu_sc0036399.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131410 Rroxscaffold_3G00222500
rosa_rugosa	Rorug02G0181000
rosa_samantha	Rh2AG234100 Rh2BG247600 Rh2CG238600 Rh2CG238700 Rh2DG241700
rosa_wichuraiana	Rw2G018130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	910
AccB1I	GGYRCC	1 cut(s)	914
AccII	CGCG	1 cut(s)	412
AciI	CCGC	2 cut(s)	410, 542
AclWI	GGATC	3 cut(s)	599, 608, 957
AcsI	RAATTY	5 cut(s)	40, 354, 420, 622, 800
AcuI	CTGAAG	1 cut(s)	623
AfaI	GTAC	2 cut(s)	135, 681
AfiI	CCNNNNNNNGG	1 cut(s)	924
AflIII	ACRYGT	1 cut(s)	682
AgsI	TTSAA	6 cut(s)	166, 314, 348, 602, 666, 887
AloI	GAACNNNNNNTCC	2 cut(s)	143, 175
AluBI	AGCT	7 cut(s)	58, 85, 242, 319, 336, 402, 893
AluI	AGCT	7 cut(s)	58, 85, 242, 319, 336, 402, 893
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	2 cut(s)	419, 983
AlwI	GGATC	3 cut(s)	599, 608, 957
AoxI	GGCC	3 cut(s)	112, 672, 817
ApeKI	GCWGC	3 cut(s)	239, 766, 905
ApoI	RAATTY	5 cut(s)	40, 354, 420, 622, 800
AspS9I	GGNCC	1 cut(s)	159
AsuC2I	CCSGG	2 cut(s)	734, 755
AsuHPI	GGTGA	3 cut(s)	73, 260, 1010
AsuII	TTCGAA	1 cut(s)	258
AvaII	GGWCC	1 cut(s)	159
BanI	GGYRCC	1 cut(s)	914
BanII	GRGCYC	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	3 cut(s)	251, 778, 892
BccI	CCATC	3 cut(s)	223, 389, 524
BceAI	ACGGC	1 cut(s)	928
BcgI	CGANNNNNNTGC	2 cut(s)	71, 105
BcnI	CCSGG	2 cut(s)	734, 755
BcoDI	GTCTC	2 cut(s)	419, 983
BfaI	CTAG	1 cut(s)	894
BfuAI	ACCTGC	1 cut(s)	910
BglII	AGATCT	1 cut(s)	367
BisI	GCNGC	3 cut(s)	240, 767, 906
BlpI	GCTNAGC	1 cut(s)	403
BlsI	GCNGC	3 cut(s)	241, 768, 907
Bme1390I	CCNGG	2 cut(s)	734, 755
Bme18I	GGWCC	1 cut(s)	159
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	1 cut(s)	916
BmrFI	CCNGG	2 cut(s)	734, 755
BmrI	ACTGGG	1 cut(s)	788
BmsI	GCATC	2 cut(s)	178, 778
BmuI	ACTGGG	1 cut(s)	788
BpmI	CTGGAG	1 cut(s)	264
Bpu1102I	GCTNAGC	1 cut(s)	403
Bpu14I	TTCGAA	1 cut(s)	258
BpuMI	CCSGG	2 cut(s)	734, 755
BsaAI	YACGTR	1 cut(s)	683
BsaJI	CCNNGG	2 cut(s)	690, 773
BsaWI	WCCGGW	1 cut(s)	502
Bsc4I	CCNNNNNNNGG	1 cut(s)	924
Bse118I	RCCGGY	1 cut(s)	487
Bse1I	ACTGG	1 cut(s)	794
Bse3DI	GCAATG	3 cut(s)	277, 495, 868
BseDI	CCNNGG	2 cut(s)	690, 773
BseGI	GGATG	6 cut(s)	169, 400, 550, 769, 789, 851
BseLI	CCNNNNNNNGG	1 cut(s)	924
BseMI	GCAATG	3 cut(s)	277, 495, 868
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	1 cut(s)	794
BseXI	GCAGC	3 cut(s)	251, 778, 892
Bsh1236I	CGCG	1 cut(s)	412
BshFI	GGCC	3 cut(s)	114, 674, 819
BshNI	GGYRCC	1 cut(s)	914
BsiHKAI	GWGCWC	1 cut(s)	87
BsiSI	CCGG	5 cut(s)	488, 503, 671, 734, 755
BslFI	GGGAC	1 cut(s)	942
BslI	CCNNNNNNNGG	1 cut(s)	924
BsmAI	GTCTC	2 cut(s)	419, 983
BsmBI	CGTCTC	1 cut(s)	419
BsmFI	GGGAC	1 cut(s)	942
BsmI	GAATGC	2 cut(s)	457, 701
BsnI	GGCC	3 cut(s)	114, 674, 819
Bsp119I	TTCGAA	1 cut(s)	258
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp1407I	TGTACA	1 cut(s)	133
Bsp143I	GATC	4 cut(s)	367, 604, 613, 949
Bsp1720I	GCTNAGC	1 cut(s)	403
Bsp19I	CCATGG	1 cut(s)	690
BspACI	CCGC	2 cut(s)	410, 542
BspANI	GGCC	3 cut(s)	114, 674, 819
BspCNI	CTCAG	1 cut(s)	416
BspFNI	CGCG	1 cut(s)	412
BspLI	GGNNCC	1 cut(s)	916
BspMI	ACCTGC	1 cut(s)	910
BspPI	GGATC	3 cut(s)	599, 608, 957
BspT104I	TTCGAA	1 cut(s)	258
BspT107I	GGYRCC	1 cut(s)	914
BsrDI	GCAATG	3 cut(s)	277, 495, 868
BsrFI	RCCGGY	1 cut(s)	487
BsrGI	TGTACA	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	794
BssAI	RCCGGY	1 cut(s)	487
BssECI	CCNNGG	2 cut(s)	690, 773
BssMI	GATC	4 cut(s)	367, 604, 613, 949
BssT1I	CCWWGG	1 cut(s)	690
Bst4CI	ACNGT	1 cut(s)	478
Bst6I	CTCTTC	1 cut(s)	393
BstAPI	GCANNNNNTGC	1 cut(s)	497
BstAUI	TGTACA	1 cut(s)	133
BstBAI	YACGTR	1 cut(s)	683
BstBI	TTCGAA	1 cut(s)	258
BstC8I	GCNNGC	1 cut(s)	83
BstDEI	CTNAG	2 cut(s)	403, 650
BstDSI	CCRYGG	2 cut(s)	690, 773
BstEII	GGTNACC	1 cut(s)	562
BstF5I	GGATG	6 cut(s)	169, 400, 550, 769, 789, 851
BstFNI	CGCG	1 cut(s)	412
BstKTI	GATC	4 cut(s)	370, 607, 616, 952
BstMAI	GTCTC	2 cut(s)	419, 983
BstMBI	GATC	4 cut(s)	367, 604, 613, 949
BstMWI	GCNNNNNNNGC	1 cut(s)	497
BstNSI	RCATGY	1 cut(s)	134
BstPI	GGTNACC	1 cut(s)	562
BstSCI	CCNGG	2 cut(s)	732, 753
BstUI	CGCG	1 cut(s)	412
BstV1I	GCAGC	3 cut(s)	251, 778, 892
BstX2I	RGATCY	4 cut(s)	367, 604, 613, 949
BstYI	RGATCY	4 cut(s)	367, 604, 613, 949
BsuRI	GGCC	3 cut(s)	114, 674, 819
BtgI	CCRYGG	2 cut(s)	690, 773
BtsCI	GGATG	6 cut(s)	169, 400, 550, 769, 789, 851
BtsIMutI	CAGTG	1 cut(s)	292
BveI	ACCTGC	1 cut(s)	910
Cac8I	GCNNGC	1 cut(s)	83
Cfr10I	RCCGGY	1 cut(s)	487
Cfr13I	GGNCC	1 cut(s)	159
CseI	GACGC	2 cut(s)	401, 977
Csp6I	GTAC	2 cut(s)	134, 680
CspCI	CAANNNNNGTGG	2 cut(s)	58, 93
CviAII	CATG	6 cut(s)	131, 555, 577, 691, 805, 946
CviQI	GTAC	2 cut(s)	134, 680
DdeI	CTNAG	2 cut(s)	403, 650
DpnI	GATC	4 cut(s)	369, 606, 615, 951
DpnII	GATC	4 cut(s)	367, 604, 613, 949
DraI	TTTAAA	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
Ecl136II	GAGCTC	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	690
Eco24I	GRGCYC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	623
Eco91I	GGTNACC	1 cut(s)	562
EcoICRI	GAGCTC	1 cut(s)	85
EcoO109I	RGGNCCY	1 cut(s)	159
EcoO65I	GGTNACC	1 cut(s)	562
EcoRI	GAATTC	1 cut(s)	800
EcoT14I	CCWWGG	1 cut(s)	690
EcoT38I	GRGCYC	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	690
Esp3I	CGTCTC	1 cut(s)	419
FaeI	CATG	6 cut(s)	134, 558, 580, 694, 808, 949
FaqI	GGGAC	1 cut(s)	942
FatI	CATG	6 cut(s)	130, 554, 576, 690, 804, 945
FauI	CCCGC	1 cut(s)	417
Fnu4HI	GCNGC	3 cut(s)	240, 767, 906
FokI	GGATG	6 cut(s)	156, 407, 557, 756, 776, 838
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	3 cut(s)	240, 767, 906
FspBI	CTAG	1 cut(s)	894
GluI	GCNGC	3 cut(s)	240, 767, 906
GsuI	CTGGAG	1 cut(s)	264
HaeIII	GGCC	3 cut(s)	114, 674, 819
HapII	CCGG	5 cut(s)	488, 503, 671, 734, 755
HgaI	GACGC	2 cut(s)	401, 977
Hin1II	CATG	6 cut(s)	134, 558, 580, 694, 808, 949
HincII	GTYRAC	1 cut(s)	204
HindII	GTYRAC	1 cut(s)	204
HinfI	GANTC	5 cut(s)	282, 330, 646, 717, 845
HpaII	CCGG	5 cut(s)	488, 503, 671, 734, 755
HphI	GGTGA	3 cut(s)	73, 260, 1010
Hpy166II	GTNNAC	3 cut(s)	204, 251, 658
Hpy188I	TCNGA	3 cut(s)	174, 629, 642
Hpy188III	TCNNGA	7 cut(s)	327, 392, 516, 608, 714, 887, 953
Hpy8I	GTNNAC	3 cut(s)	204, 251, 658
Hpy99I	CGWCG	1 cut(s)	971
HpyAV	CCTTC	2 cut(s)	16, 58
HpyCH4III	ACNGT	1 cut(s)	478
HpyCH4IV	ACGT	1 cut(s)	682
HpyCH4V	TGCA	6 cut(s)	239, 270, 352, 457, 500, 699
HpyF10VI	GCNNNNNNNGC	1 cut(s)	497
HpyF3I	CTNAG	2 cut(s)	403, 650
HpySE526I	ACGT	1 cut(s)	682
Hsp92II	CATG	6 cut(s)	134, 558, 580, 694, 808, 949
Kzo9I	GATC	4 cut(s)	367, 604, 613, 949
LmnI	GCTCC	1 cut(s)	942
Lsp1109I	GCAGC	3 cut(s)	251, 778, 892
LweI	GCATC	2 cut(s)	178, 778
MaeI	CTAG	1 cut(s)	894
MaeII	ACGT	1 cut(s)	682
MaeIII	GTNAC	1 cut(s)	562
MalI	GATC	4 cut(s)	369, 606, 615, 951
MboI	GATC	4 cut(s)	367, 604, 613, 949
MboII	GAAGA	7 cut(s)	130, 380, 614, 623, 712, 821, 878
MfeI	CAATTG	1 cut(s)	222
MflI	RGATCY	4 cut(s)	367, 604, 613, 949
MhlI	GDGCHC	1 cut(s)	87
MlyI	GAGTC	1 cut(s)	339
MmeI	TCCRAC	1 cut(s)	460
MnlI	CCTC	7 cut(s)	104, 132, 187, 239, 283, 636, 830
MseI	TTAA	2 cut(s)	189, 372
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	5 cut(s)	488, 503, 671, 734, 755
MspR9I	CCNGG	2 cut(s)	734, 755
MunI	CAATTG	1 cut(s)	222
Mva1269I	GAATGC	2 cut(s)	457, 701
MvnI	CGCG	1 cut(s)	412
MwoI	GCNNNNNNNGC	1 cut(s)	497
NciI	CCSGG	2 cut(s)	734, 755
NcoI	CCATGG	1 cut(s)	690
NdeII	GATC	4 cut(s)	367, 604, 613, 949
NlaIII	CATG	6 cut(s)	134, 558, 580, 694, 808, 949
NlaIV	GGNNCC	1 cut(s)	916
NspI	RCATGY	1 cut(s)	134
NspV	TTCGAA	1 cut(s)	258
PctI	GAATGC	2 cut(s)	457, 701
PfeI	GAWTC	4 cut(s)	282, 646, 717, 845
PfoI	TCCNGGA	1 cut(s)	753
PkrI	GCNGC	3 cut(s)	241, 768, 907
PleI	GAGTC	1 cut(s)	338
PpsI	GAGTC	1 cut(s)	338
Ppu21I	YACGTR	1 cut(s)	683
PpuMI	RGGWCCY	1 cut(s)	159
Psp124BI	GAGCTC	1 cut(s)	87
Psp5II	RGGWCCY	1 cut(s)	159
PspEI	GGTNACC	1 cut(s)	562
PspN4I	GGNNCC	1 cut(s)	916
PspPI	GGNCC	1 cut(s)	159
PspPPI	RGGWCCY	1 cut(s)	159
PsuI	RGATCY	4 cut(s)	367, 604, 613, 949
PvuII	CAGCTG	1 cut(s)	242
RsaI	GTAC	2 cut(s)	135, 681
RsaNI	GTAC	2 cut(s)	134, 680
SacI	GAGCTC	1 cut(s)	87
SaqAI	TTAA	2 cut(s)	189, 372
SatI	GCNGC	3 cut(s)	240, 767, 906
Sau3AI	GATC	4 cut(s)	367, 604, 613, 949
Sau96I	GGNCC	1 cut(s)	159
SchI	GAGTC	1 cut(s)	339
ScrFI	CCNGG	2 cut(s)	734, 755
SduI	GDGCHC	1 cut(s)	87
SfaNI	GCATC	2 cut(s)	178, 778
SfuI	TTCGAA	1 cut(s)	258
SinI	GGWCC	1 cut(s)	159
SsiI	CCGC	2 cut(s)	410, 542
SspI	AATATT	1 cut(s)	873
SspMI	CTAG	1 cut(s)	894
SstI	GAGCTC	1 cut(s)	87
StyD4I	CCNGG	2 cut(s)	732, 753
StyI	CCWWGG	1 cut(s)	690
TaaI	ACNGT	1 cut(s)	478
TaiI	ACGT	1 cut(s)	685
TaqI	TCGA	3 cut(s)	258, 280, 715
TatI	WGTACW	1 cut(s)	133
TfiI	GAWTC	4 cut(s)	282, 646, 717, 845
Tru1I	TTAA	2 cut(s)	189, 372
Tru9I	TTAA	2 cut(s)	189, 372
TscAI	CASTG	1 cut(s)	292
TseI	GCWGC	3 cut(s)	239, 766, 905
TspDTI	ATGAA	4 cut(s)	164, 793, 858, 879
TspGWI	ACGGA	1 cut(s)	762
TspRI	CASTG	1 cut(s)	292
VpaK11BI	GGWCC	1 cut(s)	159
XapI	RAATTY	5 cut(s)	40, 354, 420, 622, 800
XceI	RCATGY	1 cut(s)	134
XspI	CTAG	1 cut(s)	894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.