Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0008926

Physical Location & Seq

Genomic Coordinates Forward (+)

25226938 .. 25229232

Gene Structure 2295 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG247600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGAGCGCTATGAGATAGTGAAAGATATTGGTTCTGGGAACTTTGGTGTTGCAAAATTGGTGAAGGACAAATGGAGTGGTGAGCTCTATGCCGTCAAGTTCATTGAAAGAGGCCAGAAGCAAATTTGTCACAGAGATCTTAAACTGGAGAACACACTTCTAGATTCAAGCTCAGCTCCACGTCTCAAAATTTGTGATTTTGGTTATTCCAAGTCATCTGTGCTGCATTCACAACCCAAATCAACTGTTGGAACACCTGCCTACATTGCACCAGAAGTCCTGTCAAGAAAAGAGTATGATGGGAAGATTGCAGATGTTTGGTCTTGTGGGGTTACATTATATGTGATGCTGGTTGGTGCTTATCCCTTTGAAGATCCAGAAGATCCCAGAAATTTCAGGAAAACACTTCAGAAAATTCTGAGCGTCAGCTATTCAATTCCTGACTATGTACGCGTTTCCAGGGAATGTAGACATCTTCTTTCTCGAATTTTCGTTGCTAACCCCGAAAAGTATACACCTTTACCACCTTGCAGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

179

Amino Acids

20.33

Weight (kDa)

8.89

Isoelectric Point (pI)

35.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	39 - 130	6.9e-13	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	40 - 170	2.8e-32	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40010
fragaria_vesca	FvH4_1g20310 FvH4_1g20310 FvH4_1g20310 FvH4_1g20310 FvH4_1g20310
malus_domestica	MD01G1035000.v1.1 MD15G1321000.v1.1
prunus_persica	Prupe.6G192200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0112461
rosa_laevigata	RLG00000017982
rosa_multiflora	Rmu_sc0012231.1_g000005 Rmu_sc0036399.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131410 Rroxscaffold_3G00222500
rosa_rugosa	Rorug02G0181000
rosa_samantha	Rh2AG234100 Rh2BG247600 Rh2CG238600 Rh2CG238700 Rh2DG241700
rosa_wichuraiana	Rw2G018130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	265
Acc36I	ACCTGC	1 cut(s)	265
AccI	GTMKAC	2 cut(s)	469, 512
AccII	CGCG	1 cut(s)	453
AclWI	GGATC	2 cut(s)	368, 377
AcsI	RAATTY	5 cut(s)	123, 189, 391, 414, 486
AcuI	CTGAAG	1 cut(s)	392
AfaI	GTAC	1 cut(s)	450
AfeI	AGCGCT	1 cut(s)	8
AflIII	ACRYGT	1 cut(s)	451
AgsI	TTSAA	4 cut(s)	107, 168, 371, 435
AjiI	CACGTC	1 cut(s)	182
AjnI	CCWGG	1 cut(s)	458
AluBI	AGCT	5 cut(s)	85, 171, 176, 429, 534
AluI	AGCT	5 cut(s)	85, 171, 176, 429, 534
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	188
AlwI	GGATC	2 cut(s)	368, 377
AlwNI	CAGNNNCTG	1 cut(s)	537
Aor51HI	AGCGCT	1 cut(s)	8
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	2 cut(s)	223, 531
ApoI	RAATTY	5 cut(s)	123, 189, 391, 414, 486
AspLEI	GCGC	1 cut(s)	9
AsuHPI	GGTGA	2 cut(s)	73, 92
BanII	GRGCYC	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	210
BccI	CCATC	1 cut(s)	293
BceAI	ACGGC	1 cut(s)	77
BciT130I	CCWGG	1 cut(s)	460
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	1 cut(s)	161
BfoI	RGCGCY	1 cut(s)	10
BfuAI	ACCTGC	1 cut(s)	265
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	2 cut(s)	224, 532
BlpI	GCTNAGC	1 cut(s)	172
BlsI	GCNGC	2 cut(s)	225, 533
Bme1390I	CCNGG	1 cut(s)	460
BmgBI	CACGTC	1 cut(s)	182
BmrFI	CCNGG	1 cut(s)	460
BmsI	GCATC	1 cut(s)	336
BpmI	CTGGAG	1 cut(s)	167
Bpu1102I	GCTNAGC	1 cut(s)	172
BsaJI	CCNNGG	1 cut(s)	459
Bse1I	ACTGG	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	264
BseBI	CCWGG	1 cut(s)	460
BseDI	CCNNGG	1 cut(s)	459
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	2 cut(s)	186, 410
BseNI	ACTGG	1 cut(s)	150
BseXI	GCAGC	1 cut(s)	210
Bsh1236I	CGCG	1 cut(s)	453
BshFI	GGCC	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	87
BsmAI	GTCTC	1 cut(s)	188
BsmBI	CGTCTC	1 cut(s)	188
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	3 cut(s)	136, 373, 382
Bsp1720I	GCTNAGC	1 cut(s)	172
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	2 cut(s)	185, 411
BspFNI	CGCG	1 cut(s)	453
BspMI	ACCTGC	1 cut(s)	265
BspPI	GGATC	2 cut(s)	368, 377
BsrDI	GCAATG	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	150
BssECI	CCNNGG	1 cut(s)	459
BssMI	GATC	3 cut(s)	136, 373, 382
BssNAI	GTATAC	1 cut(s)	513
Bst1107I	GTATAC	1 cut(s)	513
Bst2UI	CCWGG	1 cut(s)	460
Bst4CI	ACNGT	1 cut(s)	247
BstDEI	CTNAG	2 cut(s)	172, 419
BstFNI	CGCG	1 cut(s)	453
BstH2I	RGCGCY	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	3 cut(s)	139, 376, 385
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	3 cut(s)	136, 373, 382
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstNI	CCWGG	1 cut(s)	460
BstSCI	CCNGG	1 cut(s)	458
BstUI	CGCG	1 cut(s)	453
BstV1I	GCAGC	1 cut(s)	210
BstX2I	RGATCY	3 cut(s)	136, 373, 382
BstYI	RGATCY	3 cut(s)	136, 373, 382
BstZ17I	GTATAC	1 cut(s)	513
BsuRI	GGCC	1 cut(s)	114
BtrI	CACGTC	1 cut(s)	182
BveI	ACCTGC	1 cut(s)	265
CaiI	CAGNNNCTG	1 cut(s)	537
CfoI	GCGC	1 cut(s)	9
CseI	GACGC	1 cut(s)	412
Csp6I	GTAC	1 cut(s)	449
CspCI	CAANNNNNGTGG	2 cut(s)	58, 93
CviJI	RGCY	6 cut(s)	85, 114, 171, 176, 429, 534
CviKI_1	RGCY	6 cut(s)	85, 114, 171, 176, 429, 534
CviQI	GTAC	1 cut(s)	449
DdeI	CTNAG	2 cut(s)	172, 419
DpnI	GATC	3 cut(s)	138, 375, 384
DpnII	GATC	3 cut(s)	136, 373, 382
Ecl136II	GAGCTC	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	87
Eco47III	AGCGCT	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	392
EcoICRI	GAGCTC	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	458
EcoT38I	GRGCYC	1 cut(s)	87
Esp3I	CGTCTC	1 cut(s)	188
FaiI	YATR	7 cut(s)	12, 90, 297, 340, 342, 447, 513
FblI	GTMKAC	2 cut(s)	469, 512
Fnu4HI	GCNGC	2 cut(s)	224, 532
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	2 cut(s)	224, 532
FspBI	CTAG	1 cut(s)	161
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	2 cut(s)	224, 532
GsuI	CTGGAG	1 cut(s)	167
HaeII	RGCGCY	1 cut(s)	10
HaeIII	GGCC	1 cut(s)	114
HgaI	GACGC	1 cut(s)	412
HhaI	GCGC	1 cut(s)	9
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HinfI	GANTC	1 cut(s)	164
HphI	GGTGA	2 cut(s)	73, 92
Hpy166II	GTNNAC	2 cut(s)	470, 513
Hpy188I	TCNGA	3 cut(s)	411, 420, 539
Hpy188III	TCNNGA	6 cut(s)	161, 285, 377, 397, 440, 483
Hpy8I	GTNNAC	2 cut(s)	470, 513
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	1 cut(s)	181
HpyCH4V	TGCA	5 cut(s)	53, 226, 269, 311, 531
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	2 cut(s)	172, 419
HpySE526I	ACGT	1 cut(s)	181
HspAI	GCGC	1 cut(s)	7
Kzo9I	GATC	3 cut(s)	136, 373, 382
LmnI	GCTCC	2 cut(s)	4, 181
Lsp1109I	GCAGC	1 cut(s)	210
LweI	GCATC	1 cut(s)	336
MaeI	CTAG	1 cut(s)	161
MaeII	ACGT	1 cut(s)	181
MaeIII	GTNAC	2 cut(s)	128, 331
MalI	GATC	3 cut(s)	138, 375, 384
MboI	GATC	3 cut(s)	136, 373, 382
MboII	GAAGA	4 cut(s)	316, 383, 392, 467
MflI	RGATCY	3 cut(s)	136, 373, 382
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	7 cut(s)	56, 123, 189, 391, 414, 435, 486
MluI	ACGCGT	1 cut(s)	451
MmeI	TCCRAC	1 cut(s)	229
MnlI	CCTC	1 cut(s)	104
MseI	TTAA	1 cut(s)	141
MspR9I	CCNGG	1 cut(s)	460
Mva1269I	GAATGC	1 cut(s)	226
MvaI	CCWGG	1 cut(s)	460
MvnI	CGCG	1 cut(s)	453
MwoI	GCNNNNNNNGC	1 cut(s)	266
NdeII	GATC	3 cut(s)	136, 373, 382
NmuCI	GTSAC	1 cut(s)	128
PaqCI	CACCTGC	1 cut(s)	265
PctI	GAATGC	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	225, 533
Psp124BI	GAGCTC	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	458
PspGI	CCWGG	1 cut(s)	458
PstNI	CAGNNNCTG	1 cut(s)	537
PsuI	RGATCY	3 cut(s)	136, 373, 382
RsaI	GTAC	1 cut(s)	450
RsaNI	GTAC	1 cut(s)	449
SacI	GAGCTC	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	2 cut(s)	224, 532
Sau3AI	GATC	3 cut(s)	136, 373, 382
ScrFI	CCNGG	1 cut(s)	460
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	9 cut(s)	87, 173, 178, 184, 259, 431, 520, 529, 536
SfaNI	GCATC	1 cut(s)	336
Sse9I	AATT	7 cut(s)	56, 123, 189, 391, 414, 435, 486
SspMI	CTAG	1 cut(s)	161
SstI	GAGCTC	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	458
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	1 cut(s)	184
TaqI	TCGA	1 cut(s)	484
TasI	AATT	7 cut(s)	56, 123, 189, 391, 414, 435, 486
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	2 cut(s)	223, 531
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	1 cut(s)	91
XapI	RAATTY	5 cut(s)	123, 189, 391, 414, 486
XbaI	TCTAGA	1 cut(s)	160
XmiI	GTMKAC	2 cut(s)	469, 512
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.