Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008926

Physical Location & Seq

Genomic Coordinates Forward (+)

24043370 .. 24045586

Gene Structure 2217 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017982

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGAGCGCTATGAGATAGTGAAAGATATTGGTTCTGGGAACTTTGGTGTTGCAAAATTGGTGAAGGACAAATGGAGTGGTGAGCTCTATGCCGTCAAGTTCATTGAAAGAGGCCAGAAGAATCAAACTACTTTTTGGCCTATCATTCAACGTTCTTTTTCACACTCGGCGAAAGTCAAATATTCATCATTACCAGCTTGGCTTGAATTCCTCTGCTTCTCTATTACTAGTTATTGCTTTAGCATATTTAAAACTTGTGGAATTACTCTTTCTCTTATGTACAATCAAATTTGTCACAGAGATCTTAAACTGGAGAACACACTTCTAGATTCAAGCTCAGCTCCACGTCTCAAAATTTGTGATTTTGGTTATTCCAAGTCATCTGTGCTGCATTCACAACCCAAATCAACTGTTGGAACACCTGCCTACATTGCACCAGAAGTCCTGTCAAGAAAAGAGTATGATGGGAAGATAGCAGATGTTTGGTCTTGTGGGGTTACATTATATGTGATGCTGGTTGGTGCTTATCCCTTTGAAGATCCAGAAGATCCCAGAAATTTCAGGAAAACACTTCAGAAAATTCTGAGCGTCAGCTATTCAATTCCTGACTATGTACGCGTTTCCAGGGAATGTAGACATCTTCTTTCTCGAATTTTCGTTGCTAACCCCGAAAAGAGAATAACAATCCCAGAGATAAAGCAGCACCCCTGGTTTCTAAAAAATTTACCGGAGGAATTCATGGATGAAGACAGCCTGCAAATTGATGATGATCAAAAAAATGAAACCTCCCAAAGTGTTGAAGAAATAGTGTCCATTATTCAAGAGGCTCGAAAAGCTGGTGATGGCATCAAAGTTGGTGGACATCTTCTTGGAAGTATGGACCTTGATGAGATAGATGATGCTGACATCGATGATATAGAAACGAGTGGTGATTTTGTATGTGCATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

317

Amino Acids

35.88

Weight (kDa)

5.3

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	92 - 238	4.6e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	92 - 234	3.6e-14	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40010
fragaria_vesca	FvH4_1g20310 FvH4_1g20310 FvH4_1g20310 FvH4_1g20310 FvH4_1g20310
malus_domestica	MD01G1035000.v1.1 MD15G1321000.v1.1
prunus_persica	Prupe.6G192200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0112461
rosa_laevigata	RLG00000017982
rosa_multiflora	Rmu_sc0012231.1_g000005 Rmu_sc0036399.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131410 Rroxscaffold_3G00222500
rosa_rugosa	Rorug02G0181000
rosa_samantha	Rh2AG234100 Rh2BG247600 Rh2CG238600 Rh2CG238700 Rh2DG241700
rosa_wichuraiana	Rw2G018130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	430
Acc36I	ACCTGC	1 cut(s)	430
AccI	GTMKAC	1 cut(s)	634
AccII	CGCG	1 cut(s)	618
AclI	AACGTT	1 cut(s)	151
AclWI	GGATC	2 cut(s)	533, 542
AcsI	RAATTY	8 cut(s)	206, 288, 354, 556, 579, 651, 721, 734
AcuI	CTGAAG	1 cut(s)	557
AfaI	GTAC	2 cut(s)	281, 615
AfeI	AGCGCT	1 cut(s)	8
AflIII	ACRYGT	1 cut(s)	616
AgsI	TTSAA	8 cut(s)	107, 149, 206, 333, 536, 600, 800, 821
AhlI	ACTAGT	1 cut(s)	227
AjiI	CACGTC	1 cut(s)	347
AjnI	CCWGG	2 cut(s)	623, 707
AluBI	AGCT	6 cut(s)	85, 197, 336, 341, 594, 836
AluI	AGCT	6 cut(s)	85, 197, 336, 341, 594, 836
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	353
AlwI	GGATC	2 cut(s)	533, 542
Aor51HI	AGCGCT	1 cut(s)	8
AoxI	GGCC	2 cut(s)	112, 137
ApeKI	GCWGC	2 cut(s)	388, 700
ApoI	RAATTY	8 cut(s)	206, 288, 354, 556, 579, 651, 721, 734
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	880
AsuHPI	GGTGA	4 cut(s)	73, 92, 851, 941
AvaII	GGWCC	1 cut(s)	880
BanII	GRGCYC	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	753
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	2 cut(s)	375, 712
BccI	CCATC	2 cut(s)	458, 836
BceAI	ACGGC	1 cut(s)	77
BciT130I	CCWGG	2 cut(s)	625, 709
BclI	TGATCA	1 cut(s)	769
BcoDI	GTCTC	1 cut(s)	353
BcuI	ACTAGT	1 cut(s)	227
BfaI	CTAG	2 cut(s)	228, 326
BfoI	RGCGCY	1 cut(s)	10
BfuAI	ACCTGC	1 cut(s)	430
BglII	AGATCT	1 cut(s)	301
BisI	GCNGC	2 cut(s)	389, 701
BlpI	GCTNAGC	1 cut(s)	337
BlsI	GCNGC	2 cut(s)	390, 702
Bme1390I	CCNGG	2 cut(s)	625, 709
Bme18I	GGWCC	1 cut(s)	880
BmgBI	CACGTC	1 cut(s)	347
BmgT120I	GGNCC	1 cut(s)	880
BmrFI	CCNGG	2 cut(s)	625, 709
BmsI	GCATC	3 cut(s)	501, 855, 889
BpiI	GAAGAC	1 cut(s)	753
BpmI	CTGGAG	1 cut(s)	332
Bpu1102I	GCTNAGC	1 cut(s)	337
Bsa29I	ATCGAT	1 cut(s)	909
BsaBI	GATNNNNATC	1 cut(s)	768
BsaJI	CCNNGG	2 cut(s)	624, 707
BsaWI	WCCGGW	1 cut(s)	727
Bse1I	ACTGG	1 cut(s)	315
Bse3DI	GCAATG	1 cut(s)	429
Bse8I	GATNNNNATC	1 cut(s)	768
BseBI	CCWGG	2 cut(s)	625, 709
BseCI	ATCGAT	1 cut(s)	909
BseDI	CCNNGG	2 cut(s)	624, 707
BseGI	GGATG	1 cut(s)	748
BseJI	GATNNNNATC	1 cut(s)	768
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	2 cut(s)	351, 575
BseNI	ACTGG	1 cut(s)	315
BseXI	GCAGC	2 cut(s)	375, 712
Bsh1236I	CGCG	1 cut(s)	618
BshFI	GGCC	2 cut(s)	114, 139
BshVI	ATCGAT	1 cut(s)	909
BsiHKAI	GWGCWC	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	728
BsmAI	GTCTC	1 cut(s)	353
BsmBI	CGTCTC	1 cut(s)	353
BsmI	GAATGC	1 cut(s)	391
BsnI	GGCC	2 cut(s)	114, 139
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp1407I	TGTACA	1 cut(s)	279
Bsp143I	GATC	4 cut(s)	301, 538, 547, 769
Bsp1720I	GCTNAGC	1 cut(s)	337
BspANI	GGCC	2 cut(s)	114, 139
BspCNI	CTCAG	2 cut(s)	350, 576
BspDI	ATCGAT	1 cut(s)	909
BspFNI	CGCG	1 cut(s)	618
BspMI	ACCTGC	1 cut(s)	430
BspPI	GGATC	2 cut(s)	533, 542
BsrDI	GCAATG	1 cut(s)	429
BsrGI	TGTACA	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	315
BssECI	CCNNGG	2 cut(s)	624, 707
BssMI	GATC	4 cut(s)	301, 538, 547, 769
Bst2UI	CCWGG	2 cut(s)	625, 709
Bst4CI	ACNGT	1 cut(s)	412
BstAUI	TGTACA	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	755
BstDEI	CTNAG	2 cut(s)	337, 584
BstF5I	GGATG	1 cut(s)	748
BstFNI	CGCG	1 cut(s)	618
BstH2I	RGCGCY	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	4 cut(s)	304, 541, 550, 772
BstMAI	GTCTC	1 cut(s)	353
BstMBI	GATC	4 cut(s)	301, 538, 547, 769
BstMWI	GCNNNNNNNGC	2 cut(s)	431, 833
BstNI	CCWGG	2 cut(s)	625, 709
BstSCI	CCNGG	2 cut(s)	623, 707
BstUI	CGCG	1 cut(s)	618
BstV1I	GCAGC	2 cut(s)	375, 712
BstV2I	GAAGAC	1 cut(s)	753
BstX2I	RGATCY	3 cut(s)	301, 538, 547
BstYI	RGATCY	3 cut(s)	301, 538, 547
Bsu15I	ATCGAT	1 cut(s)	909
BsuRI	GGCC	2 cut(s)	114, 139
BsuTUI	ATCGAT	1 cut(s)	909
BtrI	CACGTC	1 cut(s)	347
BtsCI	GGATG	1 cut(s)	748
BveI	ACCTGC	1 cut(s)	430
Cac8I	GCNNGC	1 cut(s)	755
CfoI	GCGC	1 cut(s)	9
Cfr13I	GGNCC	1 cut(s)	880
ClaI	ATCGAT	1 cut(s)	909
CseI	GACGC	1 cut(s)	577
Csp6I	GTAC	2 cut(s)	280, 614
CspCI	CAANNNNNGTGG	4 cut(s)	58, 93, 838, 873
CviAII	CATG	1 cut(s)	739
CviQI	GTAC	2 cut(s)	280, 614
DdeI	CTNAG	2 cut(s)	337, 584
DpnI	GATC	4 cut(s)	303, 540, 549, 771
DpnII	GATC	4 cut(s)	301, 538, 547, 769
DraI	TTTAAA	1 cut(s)	250
Ecl136II	GAGCTC	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	880
Eco47III	AGCGCT	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	557
EcoICRI	GAGCTC	1 cut(s)	85
EcoRI	GAATTC	2 cut(s)	206, 734
EcoRII	CCWGG	2 cut(s)	623, 707
EcoT38I	GRGCYC	1 cut(s)	87
Esp3I	CGTCTC	1 cut(s)	353
FaeI	CATG	1 cut(s)	742
FatI	CATG	1 cut(s)	738
FbaI	TGATCA	1 cut(s)	769
FblI	GTMKAC	1 cut(s)	634
Fnu4HI	GCNGC	2 cut(s)	389, 701
FokI	GGATG	1 cut(s)	755
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	2 cut(s)	389, 701
FspBI	CTAG	2 cut(s)	228, 326
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	2 cut(s)	389, 701
GsuI	CTGGAG	1 cut(s)	332
HaeII	RGCGCY	1 cut(s)	10
HaeIII	GGCC	2 cut(s)	114, 139
HapII	CCGG	1 cut(s)	728
HgaI	GACGC	1 cut(s)	577
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	1 cut(s)	742
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HinfI	GANTC	2 cut(s)	121, 329
HpaII	CCGG	1 cut(s)	728
HphI	GGTGA	4 cut(s)	73, 92, 851, 941
Hpy166II	GTNNAC	2 cut(s)	635, 860
Hpy188I	TCNGA	2 cut(s)	576, 585
Hpy188III	TCNNGA	7 cut(s)	326, 450, 542, 562, 605, 648, 821
Hpy8I	GTNNAC	2 cut(s)	635, 860
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4IV	ACGT	2 cut(s)	151, 346
HpyCH4V	TGCA	5 cut(s)	53, 391, 434, 757, 944
HpyF10VI	GCNNNNNNNGC	2 cut(s)	431, 833
HpyF3I	CTNAG	2 cut(s)	337, 584
HpySE526I	ACGT	2 cut(s)	151, 346
Hsp92II	CATG	1 cut(s)	742
HspAI	GCGC	1 cut(s)	7
Ksp22I	TGATCA	1 cut(s)	769
Kzo9I	GATC	4 cut(s)	301, 538, 547, 769
LmnI	GCTCC	2 cut(s)	4, 346
Lsp1109I	GCAGC	2 cut(s)	375, 712
LweI	GCATC	3 cut(s)	501, 855, 889
MaeI	CTAG	2 cut(s)	228, 326
MaeII	ACGT	2 cut(s)	151, 346
MaeIII	GTNAC	2 cut(s)	293, 496
MalI	GATC	4 cut(s)	303, 540, 549, 771
MboI	GATC	4 cut(s)	301, 538, 547, 769
MboII	GAAGA	8 cut(s)	130, 481, 548, 557, 632, 758, 812, 857
MflI	RGATCY	3 cut(s)	301, 538, 547
MhlI	GDGCHC	1 cut(s)	87
MluI	ACGCGT	1 cut(s)	616
MmeI	TCCRAC	1 cut(s)	394
MnlI	CCTC	5 cut(s)	104, 221, 724, 796, 817
MseI	TTAA	2 cut(s)	249, 306
MspI	CCGG	1 cut(s)	728
MspR9I	CCNGG	2 cut(s)	625, 709
Mva1269I	GAATGC	1 cut(s)	391
MvaI	CCWGG	2 cut(s)	625, 709
MvnI	CGCG	1 cut(s)	618
MwoI	GCNNNNNNNGC	2 cut(s)	431, 833
NdeII	GATC	4 cut(s)	301, 538, 547, 769
NlaIII	CATG	1 cut(s)	742
NmeAIII	GCCGAG	1 cut(s)	146
NmuCI	GTSAC	1 cut(s)	293
PaqCI	CACCTGC	1 cut(s)	430
PctI	GAATGC	1 cut(s)	391
PfeI	GAWTC	2 cut(s)	121, 329
PkrI	GCNGC	2 cut(s)	390, 702
Psp124BI	GAGCTC	1 cut(s)	87
Psp1406I	AACGTT	1 cut(s)	151
Psp6I	CCWGG	2 cut(s)	623, 707
PspGI	CCWGG	2 cut(s)	623, 707
PspPI	GGNCC	1 cut(s)	880
PsuI	RGATCY	3 cut(s)	301, 538, 547
RsaI	GTAC	2 cut(s)	281, 615
RsaNI	GTAC	2 cut(s)	280, 614
SacI	GAGCTC	1 cut(s)	87
SaqAI	TTAA	2 cut(s)	249, 306
SatI	GCNGC	2 cut(s)	389, 701
Sau3AI	GATC	4 cut(s)	301, 538, 547, 769
Sau96I	GGNCC	1 cut(s)	880
ScrFI	CCNGG	2 cut(s)	625, 709
SduI	GDGCHC	1 cut(s)	87
SfaNI	GCATC	3 cut(s)	501, 855, 889
SinI	GGWCC	1 cut(s)	880
SpeI	ACTAGT	1 cut(s)	227
SspI	AATATT	1 cut(s)	182
SspMI	CTAG	2 cut(s)	228, 326
SstI	GAGCTC	1 cut(s)	87
StyD4I	CCNGG	2 cut(s)	623, 707
TaaI	ACNGT	1 cut(s)	412
TaiI	ACGT	2 cut(s)	154, 349
TaqI	TCGA	3 cut(s)	649, 829, 909
TatI	WGTACW	1 cut(s)	279
TfiI	GAWTC	2 cut(s)	121, 329
Tru1I	TTAA	2 cut(s)	249, 306
Tru9I	TTAA	2 cut(s)	249, 306
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	2 cut(s)	388, 700
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	5 cut(s)	91, 174, 727, 759, 795
VpaK11BI	GGWCC	1 cut(s)	880
XapI	RAATTY	8 cut(s)	206, 288, 354, 556, 579, 651, 721, 734
XbaI	TCTAGA	1 cut(s)	325
XmiI	GTMKAC	1 cut(s)	634
XspI	CTAG	2 cut(s)	228, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.