Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008926

Physical Location & Seq

Genomic Coordinates Forward (+)

12539812 .. 12542987

Gene Structure 3176 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g20310.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGAGAGGTATGAGATAGTGAAAGATATTGGTTCTGGGAACTTTGGTGTTGCAAAATTGGTGAAGGACAAATGGAGTGGTGAGCTCTATGCCATCAAGTTCATTGAGAGAGGCCAGAAGATTGATGAGCATGTACAGAGAGAGATCATGAACCACAGGTCACTGAAGCATCCAAATATCATAAGATTTAAGGAGGTCTTGTTAACACAAACCGATTTAGCGATTGTCATGGAATATGCAGCAGGAGGAGAACTTTTTGAAAGAATATGCAATGCTGGTAGATTCAGTGAAGATGAGGCCAGATTTTTCTTCCAGCAGCTGATTTCAGGAGTCAGTTACTGTCATTCAATGCAAATCTGTCACAGAGATCTTAAACTGGAGAACACACTTCTAGATTCAAGCTCAGCTCCACGTCTCAAAATATGTGATTTCGGTTATTCCAAGTCATCTGTGCTGCATTCACAACCCAAATCAACTGTAGGAACACCTGCCTATATTGCACCAGAAGTCCTGTCAAAAAAAGAGTATGATGGGAAGATAGCAGATGTTTGGTCTTGTGGGGTTACCCTATATGTGATGCTGGTTGGTGCTTATCCTTTTGAAGATCCAGAAGATCCCAGAAATTTCAGGAAGACACTTCAGCGTCAGCTATTCAATTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko01521 ko03010 ko04016 ko04066 ko04075 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04016 map04066 map04075 map04150 map04151 map04371 map04714 map04910 map05205

Pfam Domains

Protein Families

Pkinase

Protein Analysis

221

Amino Acids

25.17

Weight (kDa)

7.01

Isoelectric Point (pI)

30.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 179	2.3e-53	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	6 - 177	3.3e-23	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G40010
fragaria_vesca	FvH4_1g20310 FvH4_1g20310 FvH4_1g20310 FvH4_1g20310 FvH4_1g20310
malus_domestica	MD01G1035000.v1.1 MD15G1321000.v1.1
prunus_persica	Prupe.6G192200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0112461
rosa_laevigata	RLG00000017982
rosa_multiflora	Rmu_sc0012231.1_g000005 Rmu_sc0036399.1_g000002
rosa_roxburghii	Rroxscaffold_2G00131410 Rroxscaffold_3G00222500
rosa_rugosa	Rorug02G0181000
rosa_samantha	Rh2AG234100 Rh2BG247600 Rh2CG238600 Rh2CG238700 Rh2DG241700
rosa_wichuraiana	Rw2G018130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	496
Acc36I	ACCTGC	1 cut(s)	496
AclWI	GGATC	2 cut(s)	599, 608
AcsI	RAATTY	1 cut(s)	622
AcuI	CTGAAG	2 cut(s)	185, 623
AfaI	GTAC	1 cut(s)	135
AgsI	TTSAA	5 cut(s)	260, 348, 399, 602, 655
AjiI	CACGTC	1 cut(s)	413
AluBI	AGCT	5 cut(s)	85, 319, 402, 407, 649
AluI	AGCT	5 cut(s)	85, 319, 402, 407, 649
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	419
AlwI	GGATC	2 cut(s)	599, 608
AlwNI	CAGNNNCTG	2 cut(s)	319, 339
AoxI	GGCC	2 cut(s)	112, 297
ApeKI	GCWGC	3 cut(s)	239, 316, 454
ApoI	RAATTY	1 cut(s)	622
AsuHPI	GGTGA	2 cut(s)	73, 92
BanII	GRGCYC	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	638
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	3 cut(s)	251, 328, 441
BccI	CCATC	2 cut(s)	101, 524
BcoDI	GTCTC	1 cut(s)	419
BfaI	CTAG	1 cut(s)	392
BfmI	CTRYAG	1 cut(s)	477
BfuAI	ACCTGC	1 cut(s)	496
BglII	AGATCT	1 cut(s)	367
BisI	GCNGC	3 cut(s)	240, 317, 455
BlpI	GCTNAGC	1 cut(s)	403
BlsI	GCNGC	3 cut(s)	241, 318, 456
BmgBI	CACGTC	1 cut(s)	413
BmsI	GCATC	2 cut(s)	178, 567
BpiI	GAAGAC	1 cut(s)	638
BpmI	CTGGAG	1 cut(s)	398
Bpu1102I	GCTNAGC	1 cut(s)	403
BsaXI	ACNNNNNCTCC	2 cut(s)	185, 215
Bse1I	ACTGG	1 cut(s)	381
Bse3DI	GCAATG	1 cut(s)	277
BseGI	GGATG	1 cut(s)	169
BseMI	GCAATG	1 cut(s)	277
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	1 cut(s)	381
BseRI	GAGGAG	1 cut(s)	261
BseXI	GCAGC	3 cut(s)	251, 328, 441
BshFI	GGCC	2 cut(s)	114, 299
BsiHKAI	GWGCWC	1 cut(s)	87
BsmAI	GTCTC	1 cut(s)	419
BsmBI	CGTCTC	1 cut(s)	419
BsmI	GAATGC	1 cut(s)	457
BsnI	GGCC	2 cut(s)	114, 299
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp1407I	TGTACA	1 cut(s)	133
Bsp143I	GATC	4 cut(s)	144, 367, 604, 613
Bsp1720I	GCTNAGC	1 cut(s)	403
BspANI	GGCC	2 cut(s)	114, 299
BspCNI	CTCAG	1 cut(s)	416
BspHI	TCATGA	1 cut(s)	147
BspMI	ACCTGC	1 cut(s)	496
BspPI	GGATC	2 cut(s)	599, 608
BsrDI	GCAATG	1 cut(s)	277
BsrGI	TGTACA	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	381
BssMI	GATC	4 cut(s)	144, 367, 604, 613
Bst4CI	ACNGT	2 cut(s)	341, 478
BstAUI	TGTACA	1 cut(s)	133
BstDEI	CTNAG	1 cut(s)	403
BstEII	GGTNACC	1 cut(s)	562
BstF5I	GGATG	1 cut(s)	169
BstKTI	GATC	4 cut(s)	147, 370, 607, 616
BstMAI	GTCTC	1 cut(s)	419
BstMBI	GATC	4 cut(s)	144, 367, 604, 613
BstMWI	GCNNNNNNNGC	1 cut(s)	497
BstNSI	RCATGY	1 cut(s)	134
BstPI	GGTNACC	1 cut(s)	562
BstSFI	CTRYAG	1 cut(s)	477
BstV1I	GCAGC	3 cut(s)	251, 328, 441
BstV2I	GAAGAC	1 cut(s)	638
BstX2I	RGATCY	3 cut(s)	367, 604, 613
BstYI	RGATCY	3 cut(s)	367, 604, 613
BsuRI	GGCC	2 cut(s)	114, 299
BtrI	CACGTC	1 cut(s)	413
BtsCI	GGATG	1 cut(s)	169
BtsIMutI	CAGTG	2 cut(s)	161, 292
BveI	ACCTGC	1 cut(s)	496
CaiI	CAGNNNCTG	2 cut(s)	319, 339
CciI	TCATGA	1 cut(s)	147
CseI	GACGC	1 cut(s)	632
Csp6I	GTAC	1 cut(s)	134
CspCI	CAANNNNNGTGG	2 cut(s)	58, 93
CviAII	CATG	3 cut(s)	131, 148, 229
CviJI	RGCY	7 cut(s)	85, 114, 299, 319, 402, 407, 649
CviKI_1	RGCY	7 cut(s)	85, 114, 299, 319, 402, 407, 649
CviQI	GTAC	1 cut(s)	134
DdeI	CTNAG	1 cut(s)	403
DpnI	GATC	4 cut(s)	146, 369, 606, 615
DpnII	GATC	4 cut(s)	144, 367, 604, 613
Ecl136II	GAGCTC	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	87
Eco53kI	GAGCTC	1 cut(s)	85
Eco57I	CTGAAG	2 cut(s)	185, 623
Eco91I	GGTNACC	1 cut(s)	562
EcoICRI	GAGCTC	1 cut(s)	85
EcoO65I	GGTNACC	1 cut(s)	562
EcoT38I	GRGCYC	1 cut(s)	87
Esp3I	CGTCTC	1 cut(s)	419
FaeI	CATG	3 cut(s)	134, 151, 232
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FatI	CATG	3 cut(s)	130, 147, 228
Fnu4HI	GCNGC	3 cut(s)	240, 317, 455
FokI	GGATG	1 cut(s)	156
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	3 cut(s)	240, 317, 455
FspBI	CTAG	1 cut(s)	392
GluI	GCNGC	3 cut(s)	240, 317, 455
GsuI	CTGGAG	1 cut(s)	398
HaeIII	GGCC	2 cut(s)	114, 299
HgaI	GACGC	1 cut(s)	632
Hin1II	CATG	3 cut(s)	134, 151, 232
HincII	GTYRAC	1 cut(s)	204
HindII	GTYRAC	1 cut(s)	204
HinfI	GANTC	3 cut(s)	282, 330, 395
HpaI	GTTAAC	1 cut(s)	204
HphI	GGTGA	2 cut(s)	73, 92
Hpy166II	GTNNAC	1 cut(s)	204
Hpy188III	TCNNGA	6 cut(s)	148, 327, 392, 608, 628, 660
Hpy8I	GTNNAC	1 cut(s)	204
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	2 cut(s)	341, 478
HpyCH4IV	ACGT	1 cut(s)	412
HpyCH4V	TGCA	6 cut(s)	53, 239, 270, 352, 457, 500
HpyF10VI	GCNNNNNNNGC	1 cut(s)	497
HpyF3I	CTNAG	1 cut(s)	403
HpySE526I	ACGT	1 cut(s)	412
Hsp92II	CATG	3 cut(s)	134, 151, 232
KspAI	GTTAAC	1 cut(s)	204
Kzo9I	GATC	4 cut(s)	144, 367, 604, 613
LmnI	GCTCC	1 cut(s)	412
Lsp1109I	GCAGC	3 cut(s)	251, 328, 441
LweI	GCATC	2 cut(s)	178, 567
MaeI	CTAG	1 cut(s)	392
MaeII	ACGT	1 cut(s)	412
MaeIII	GTNAC	4 cut(s)	159, 335, 359, 562
MalI	GATC	4 cut(s)	146, 369, 606, 615
MboI	GATC	4 cut(s)	144, 367, 604, 613
MboII	GAAGA	7 cut(s)	130, 301, 302, 547, 614, 623, 643
MflI	RGATCY	3 cut(s)	367, 604, 613
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	3 cut(s)	56, 622, 655
MlyI	GAGTC	1 cut(s)	339
MnlI	CCTC	4 cut(s)	104, 187, 239, 289
MseI	TTAA	3 cut(s)	189, 203, 372
MspA1I	CMGCKG	1 cut(s)	319
Mva1269I	GAATGC	1 cut(s)	457
MwoI	GCNNNNNNNGC	1 cut(s)	497
NdeII	GATC	4 cut(s)	144, 367, 604, 613
NlaIII	CATG	3 cut(s)	134, 151, 232
NmuCI	GTSAC	2 cut(s)	159, 359
NspI	RCATGY	1 cut(s)	134
PagI	TCATGA	1 cut(s)	147
PaqCI	CACCTGC	1 cut(s)	496
PctI	GAATGC	1 cut(s)	457
PfeI	GAWTC	2 cut(s)	282, 395
PkrI	GCNGC	3 cut(s)	241, 318, 456
PleI	GAGTC	1 cut(s)	338
PpsI	GAGTC	1 cut(s)	338
Psp124BI	GAGCTC	1 cut(s)	87
PspEI	GGTNACC	1 cut(s)	562
PstNI	CAGNNNCTG	2 cut(s)	319, 339
PsuI	RGATCY	3 cut(s)	367, 604, 613
PvuII	CAGCTG	1 cut(s)	319
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
SacI	GAGCTC	1 cut(s)	87
SaqAI	TTAA	3 cut(s)	189, 203, 372
SatI	GCNGC	3 cut(s)	240, 317, 455
Sau3AI	GATC	4 cut(s)	144, 367, 604, 613
SchI	GAGTC	1 cut(s)	339
SduI	GDGCHC	1 cut(s)	87
SfaNI	GCATC	2 cut(s)	178, 567
SfcI	CTRYAG	1 cut(s)	477
Sse9I	AATT	3 cut(s)	56, 622, 655
SspMI	CTAG	1 cut(s)	392
SstI	GAGCTC	1 cut(s)	87
TaaI	ACNGT	2 cut(s)	341, 478
TaiI	ACGT	1 cut(s)	415
TasI	AATT	3 cut(s)	56, 622, 655
TatI	WGTACW	1 cut(s)	133
TfiI	GAWTC	2 cut(s)	282, 395
Tru1I	TTAA	3 cut(s)	189, 203, 372
Tru9I	TTAA	3 cut(s)	189, 203, 372
TscAI	CASTG	2 cut(s)	168, 292
TseFI	GTSAC	2 cut(s)	159, 359
TseI	GCWGC	3 cut(s)	239, 316, 454
Tsp45I	GTSAC	2 cut(s)	159, 359
TspDTI	ATGAA	2 cut(s)	91, 164
TspRI	CASTG	2 cut(s)	168, 292
XapI	RAATTY	1 cut(s)	622
XbaI	TCTAGA	1 cut(s)	391
XceI	RCATGY	1 cut(s)	134
XspI	CTAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.